HEADER TRANSPORT PROTEIN 17-MAY-00 1F0Z TITLE SOLUTION STRUCTURE OF THIS, THE SULFUR CARRIER PROTEIN IN E.COLI TITLE 2 THIAMIN BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIS PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SULFUR CARRIER PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCLK413 KEYWDS UBIQUITIN FOLD, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR C.WANG,J.XI,T.P.BEGLEY,L.K.NICHOLSON REVDAT 3 16-FEB-22 1F0Z 1 REMARK REVDAT 2 24-FEB-09 1F0Z 1 VERSN REVDAT 1 10-JAN-01 1F0Z 0 JRNL AUTH C.WANG,J.XI,T.P.BEGLEY,L.K.NICHOLSON JRNL TITL SOLUTION STRUCTURE OF THIS AND IMPLICATIONS FOR THE JRNL TITL 2 EVOLUTIONARY ROOTS OF UBIQUITIN. JRNL REF NAT.STRUCT.BIOL. V. 8 47 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11135670 JRNL DOI 10.1038/83041 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, X-PLOR 3.851 REMARK 3 AUTHORS : VARIAN ASSOCIATES (VNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 882 RESTRAINTS, 802 ARE NOE- REMARK 3 DERIVED REMARK 3 DISTANCE CONSTRAINTS, 64 DIHEDRAL ANGLE RESTRAINTS, 16 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS REMARK 4 REMARK 4 1F0Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000011111. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 25 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM THIS NA; 25 MM SODIUM REMARK 210 PHOSPHATE, 5 MM DTT, 5 MG/ML REMARK 210 PEPSTATIN, 50 MICROM EDTA, 50 REMARK 210 MICROM CHLORAMPHENICOL; 1 MM REMARK 210 THIS U-15N; 25 MM SODIUM REMARK 210 PHOSPHATE, 5 MM DTT, 5 MG/ML REMARK 210 PEPSTATIN, 50 MICROM EDTA, 50 REMARK 210 MICROM CHLORAMPHENICOL; 1 MM REMARK 210 THIS U-15N, 13C; 25 MM SODIUM REMARK 210 PHOSPHATE, 5 MM DTT, 5 MG/ML REMARK 210 PEPSTATIN, 50 MICROM EDTA, 50 REMARK 210 MICROM CHLORAMPHENICOL; 1 MM REMARK 210 THIS U-15N, 13C; 25 MM SODIUM REMARK 210 PHOSPHATE, 5 MM DTT, 5 MG/ML REMARK 210 PEPSTATIN, 50 MICROM EDTA, 50 REMARK 210 MICROM CHLORAMPHENICOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY; HNHA; REMARK 210 HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, PIPP 1, X-PLOR REMARK 210 3.851 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 45 H GLN A 48 1.50 REMARK 500 O LEU A 22 H GLN A 27 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 7 19.49 57.62 REMARK 500 1 CYS A 12 -158.80 -134.45 REMARK 500 1 THR A 17 -169.03 -52.11 REMARK 500 1 ASP A 26 33.58 94.57 REMARK 500 1 ARG A 28 -111.25 -113.94 REMARK 500 1 GLN A 29 -74.46 -154.66 REMARK 500 1 GLN A 38 0.28 82.52 REMARK 500 1 ARG A 43 -59.30 -20.95 REMARK 500 1 TRP A 46 -33.63 -39.95 REMARK 500 1 VAL A 62 153.75 56.98 REMARK 500 2 ASP A 7 18.82 56.53 REMARK 500 2 CYS A 12 -149.76 -152.02 REMARK 500 2 THR A 17 -165.12 -60.78 REMARK 500 2 ASP A 26 32.94 80.39 REMARK 500 2 ARG A 28 -101.34 -85.87 REMARK 500 2 GLN A 29 -64.41 170.87 REMARK 500 2 ASN A 37 19.68 54.84 REMARK 500 2 GLN A 38 1.61 88.86 REMARK 500 2 ARG A 43 -60.10 -19.99 REMARK 500 2 VAL A 62 128.84 -178.17 REMARK 500 3 ASP A 7 17.27 57.87 REMARK 500 3 CYS A 12 -149.01 -149.48 REMARK 500 3 THR A 17 -166.88 -59.09 REMARK 500 3 ASP A 26 22.96 104.70 REMARK 500 3 GLN A 29 47.85 74.64 REMARK 500 3 ASN A 37 18.32 58.84 REMARK 500 3 GLN A 38 3.75 91.50 REMARK 500 3 ARG A 43 -60.88 -25.23 REMARK 500 4 CYS A 12 -159.11 -139.82 REMARK 500 4 THR A 17 -164.75 -55.62 REMARK 500 4 ASP A 26 39.30 92.92 REMARK 500 4 GLN A 29 63.43 76.56 REMARK 500 4 GLN A 38 -3.92 85.95 REMARK 500 4 ARG A 43 -41.24 -23.67 REMARK 500 4 HIS A 49 79.62 -105.23 REMARK 500 4 VAL A 62 151.28 -49.13 REMARK 500 5 ASP A 7 19.95 56.50 REMARK 500 5 THR A 17 -166.00 -58.66 REMARK 500 5 ASP A 26 36.39 79.43 REMARK 500 5 ARG A 28 -114.36 -93.63 REMARK 500 5 GLN A 29 -56.18 174.35 REMARK 500 5 GLN A 38 11.03 84.88 REMARK 500 5 ARG A 43 -62.18 -22.67 REMARK 500 5 VAL A 62 152.28 53.11 REMARK 500 6 CYS A 12 -156.06 -139.80 REMARK 500 6 THR A 17 -165.57 -51.48 REMARK 500 6 ASP A 26 36.56 84.72 REMARK 500 6 ALA A 30 -34.89 -31.23 REMARK 500 6 ARG A 43 -53.85 -23.85 REMARK 500 6 TRP A 46 -30.91 -39.87 REMARK 500 REMARK 500 THIS ENTRY HAS 205 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 28 0.30 SIDE CHAIN REMARK 500 1 ARG A 43 0.30 SIDE CHAIN REMARK 500 2 ARG A 28 0.32 SIDE CHAIN REMARK 500 2 ARG A 43 0.21 SIDE CHAIN REMARK 500 3 ARG A 28 0.08 SIDE CHAIN REMARK 500 3 ARG A 43 0.24 SIDE CHAIN REMARK 500 4 ARG A 28 0.17 SIDE CHAIN REMARK 500 4 ARG A 43 0.15 SIDE CHAIN REMARK 500 5 ARG A 28 0.32 SIDE CHAIN REMARK 500 5 ARG A 43 0.32 SIDE CHAIN REMARK 500 6 ARG A 28 0.21 SIDE CHAIN REMARK 500 6 ARG A 43 0.28 SIDE CHAIN REMARK 500 7 ARG A 28 0.28 SIDE CHAIN REMARK 500 7 ARG A 43 0.28 SIDE CHAIN REMARK 500 8 ARG A 28 0.27 SIDE CHAIN REMARK 500 8 ARG A 43 0.31 SIDE CHAIN REMARK 500 9 ARG A 43 0.30 SIDE CHAIN REMARK 500 10 ARG A 28 0.32 SIDE CHAIN REMARK 500 10 ARG A 43 0.28 SIDE CHAIN REMARK 500 11 ARG A 28 0.28 SIDE CHAIN REMARK 500 11 ARG A 43 0.32 SIDE CHAIN REMARK 500 12 ARG A 28 0.23 SIDE CHAIN REMARK 500 12 ARG A 43 0.30 SIDE CHAIN REMARK 500 13 ARG A 28 0.23 SIDE CHAIN REMARK 500 13 ARG A 43 0.18 SIDE CHAIN REMARK 500 14 ARG A 28 0.30 SIDE CHAIN REMARK 500 14 ARG A 43 0.26 SIDE CHAIN REMARK 500 15 ARG A 28 0.20 SIDE CHAIN REMARK 500 15 ARG A 43 0.15 SIDE CHAIN REMARK 500 16 ARG A 28 0.31 SIDE CHAIN REMARK 500 16 ARG A 43 0.14 SIDE CHAIN REMARK 500 17 ARG A 28 0.32 SIDE CHAIN REMARK 500 17 ARG A 43 0.31 SIDE CHAIN REMARK 500 18 ARG A 28 0.21 SIDE CHAIN REMARK 500 18 ARG A 43 0.27 SIDE CHAIN REMARK 500 19 ARG A 28 0.26 SIDE CHAIN REMARK 500 19 ARG A 43 0.32 SIDE CHAIN REMARK 500 20 ARG A 28 0.32 SIDE CHAIN REMARK 500 20 ARG A 43 0.32 SIDE CHAIN REMARK 500 21 ARG A 28 0.18 SIDE CHAIN REMARK 500 21 ARG A 43 0.26 SIDE CHAIN REMARK 500 22 ARG A 28 0.25 SIDE CHAIN REMARK 500 22 ARG A 43 0.30 SIDE CHAIN REMARK 500 23 ARG A 28 0.29 SIDE CHAIN REMARK 500 23 ARG A 43 0.16 SIDE CHAIN REMARK 500 24 ARG A 28 0.28 SIDE CHAIN REMARK 500 24 ARG A 43 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1F0Z A 1 66 UNP O32583 THIS_ECOLI 1 66 SEQRES 1 A 66 MET GLN ILE LEU PHE ASN ASP GLN ALA MET GLN CYS ALA SEQRES 2 A 66 ALA GLY GLN THR VAL HIS GLU LEU LEU GLU GLN LEU ASP SEQRES 3 A 66 GLN ARG GLN ALA GLY ALA ALA LEU ALA ILE ASN GLN GLN SEQRES 4 A 66 ILE VAL PRO ARG GLU GLN TRP ALA GLN HIS ILE VAL GLN SEQRES 5 A 66 ASP GLY ASP GLN ILE LEU LEU PHE GLN VAL ILE ALA GLY SEQRES 6 A 66 GLY HELIX 1 1 THR A 17 ASP A 26 1 10 HELIX 2 2 PRO A 42 ALA A 47 1 6 SHEET 1 A 3 ALA A 9 MET A 10 0 SHEET 2 A 3 ILE A 3 PHE A 5 -1 O ILE A 3 N MET A 10 SHEET 3 A 3 ASP A 55 ILE A 57 1 O ASP A 55 N LEU A 4 SHEET 1 B 3 GLN A 39 VAL A 41 0 SHEET 2 B 3 ALA A 32 ILE A 36 -1 O LEU A 34 N VAL A 41 SHEET 3 B 3 LEU A 59 GLN A 61 -1 N PHE A 60 O ALA A 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1