data_1F1T
# 
_entry.id   1F1T 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1F1T         pdb_00001f1t 10.2210/pdb1f1t/pdb 
NDB   UR0011       ?            ?                   
RCSB  RCSB011139   ?            ?                   
WWPDB D_1000011139 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2000-09-04 
2 'Structure model' 1 1 2008-04-27 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom         
2 4 'Structure model' chem_comp_bond         
3 4 'Structure model' database_2             
4 4 'Structure model' pdbx_struct_conn_angle 
5 4 'Structure model' struct_conn            
6 4 'Structure model' struct_conn_type       
7 4 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_database_2.pdbx_DOI'                        
2  4 'Structure model' '_database_2.pdbx_database_accession'         
3  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
4  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
5  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'      
9  4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'   
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'      
18 4 'Structure model' '_pdbx_struct_conn_angle.value'               
19 4 'Structure model' '_struct_conn.conn_type_id'                   
20 4 'Structure model' '_struct_conn.id'                             
21 4 'Structure model' '_struct_conn.pdbx_dist_value'                
22 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'         
23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
29 4 'Structure model' '_struct_conn.ptnr1_symmetry'                 
30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
36 4 'Structure model' '_struct_conn.ptnr2_symmetry'                 
37 4 'Structure model' '_struct_conn_type.id'                        
38 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
39 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
40 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1F1T 
_pdbx_database_status.recvd_initial_deposition_date   2000-05-19 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Baugh, C.'  1 
'Grate, D.'  2 
'Wilson, C.' 3 
# 
_citation.id                        primary 
_citation.title                     '2.8 A crystal structure of the malachite green aptamer.' 
_citation.journal_abbrev            J.Mol.Biol. 
_citation.journal_volume            301 
_citation.page_first                117 
_citation.page_last                 128 
_citation.year                      2000 
_citation.journal_id_ASTM           JMOBAK 
_citation.country                   UK 
_citation.journal_id_ISSN           0022-2836 
_citation.journal_id_CSD            0070 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   10926496 
_citation.pdbx_database_id_DOI      10.1006/jmbi.2000.3951 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Baugh, C.'  1 ? 
primary 'Grate, D.'  2 ? 
primary 'Wilson, C.' 3 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 'MALACHITE GREEN APTAMER RNA' 12711.902 1 ? ? ? 'ALL URIDINES ARE 5-BROMO-URIDINE' 
2 non-polymer syn 'STRONTIUM ION'               87.620    8 ? ? ? ?                                  
3 non-polymer syn "N,N'-TETRAMETHYL-ROSAMINE"   343.442   1 ? ? ? ?                                  
4 water       nat water                         18.015    5 ? ? ? ?                                  
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       'GGA(5BU)CCCGAC(5BU)GGCGAGAGCCAGG(5BU)AACGAA(5BU)GGA(5BU)CC' 
_entity_poly.pdbx_seq_one_letter_code_can   GGAUCCCGACUGGCGAGAGCCAGGUAACGAAUGGAUCC 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'STRONTIUM ION'             SR  
3 "N,N'-TETRAMETHYL-ROSAMINE" ROS 
4 water                       HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  G   n 
1 2  G   n 
1 3  A   n 
1 4  5BU n 
1 5  C   n 
1 6  C   n 
1 7  C   n 
1 8  G   n 
1 9  A   n 
1 10 C   n 
1 11 5BU n 
1 12 G   n 
1 13 G   n 
1 14 C   n 
1 15 G   n 
1 16 A   n 
1 17 G   n 
1 18 A   n 
1 19 G   n 
1 20 C   n 
1 21 C   n 
1 22 A   n 
1 23 G   n 
1 24 G   n 
1 25 5BU n 
1 26 A   n 
1 27 A   n 
1 28 C   n 
1 29 G   n 
1 30 A   n 
1 31 A   n 
1 32 5BU n 
1 33 G   n 
1 34 G   n 
1 35 A   n 
1 36 5BU n 
1 37 C   n 
1 38 C   n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'IN VITRO T7 TRANSCRIPTION OF A LINEARIZED PLASMID TEMPLATE' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ?                                                                
'C9 H12 Br N2 O9 P' 403.077 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"       ?                                                                
'C10 H14 N5 O7 P'   347.221 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"        ?                                                                
'C9 H14 N3 O8 P'    323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"       ?                                                                
'C10 H14 N5 O8 P'   363.221 
HOH non-polymer   . WATER                              ?                                                                'H2 O' 
18.015  
ROS non-polymer   . "N,N'-TETRAMETHYL-ROSAMINE"        '(6-DIMETHYLAMINO-9-PHENYL-XANTHEN-3-YLIDENE)-DIMETHYL-AMMONIUM' 
'C23 H23 N2 O 1'    343.442 
SR  non-polymer   . 'STRONTIUM ION'                    ?                                                                'Sr 2' 
87.620  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  G   1  1  1  G   G  A . n 
A 1 2  G   2  2  2  G   G  A . n 
A 1 3  A   3  3  3  A   A  A . n 
A 1 4  5BU 4  4  4  5BU +U A . n 
A 1 5  C   5  5  5  C   C  A . n 
A 1 6  C   6  6  6  C   C  A . n 
A 1 7  C   7  7  7  C   C  A . n 
A 1 8  G   8  8  8  G   G  A . n 
A 1 9  A   9  9  9  A   A  A . n 
A 1 10 C   10 10 10 C   C  A . n 
A 1 11 5BU 11 11 11 5BU +U A . n 
A 1 12 G   12 12 12 G   G  A . n 
A 1 13 G   13 13 13 G   G  A . n 
A 1 14 C   14 14 14 C   C  A . n 
A 1 15 G   15 15 15 G   G  A . n 
A 1 16 A   16 16 16 A   A  A . n 
A 1 17 G   17 17 17 G   G  A . n 
A 1 18 A   18 18 18 A   A  A . n 
A 1 19 G   19 19 19 G   G  A . n 
A 1 20 C   20 20 20 C   C  A . n 
A 1 21 C   21 21 21 C   C  A . n 
A 1 22 A   22 22 22 A   A  A . n 
A 1 23 G   23 23 23 G   G  A . n 
A 1 24 G   24 24 24 G   G  A . n 
A 1 25 5BU 25 25 25 5BU +U A . n 
A 1 26 A   26 26 26 A   A  A . n 
A 1 27 A   27 27 27 A   A  A . n 
A 1 28 C   28 28 28 C   C  A . n 
A 1 29 G   29 29 29 G   G  A . n 
A 1 30 A   30 30 30 A   A  A . n 
A 1 31 A   31 31 31 A   A  A . n 
A 1 32 5BU 32 32 32 5BU +U A . n 
A 1 33 G   33 33 33 G   G  A . n 
A 1 34 G   34 34 34 G   G  A . n 
A 1 35 A   35 35 35 A   A  A . n 
A 1 36 5BU 36 36 36 5BU +U A . n 
A 1 37 C   37 37 37 C   C  A . n 
A 1 38 C   38 38 38 C   C  A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 SR  1 201 201 SR  SR  A . 
C 2 SR  1 202 202 SR  SR  A . 
D 2 SR  1 203 203 SR  SR  A . 
E 2 SR  1 204 204 SR  SR  A . 
F 2 SR  1 205 205 SR  SR  A . 
G 2 SR  1 206 206 SR  SR  A . 
H 2 SR  1 208 208 SR  SR  A . 
I 2 SR  1 209 209 SR  SR  A . 
J 3 ROS 1 101 101 ROS ROS A . 
K 4 HOH 1 301 301 HOH HOH A . 
K 4 HOH 2 302 302 HOH HOH A . 
K 4 HOH 3 303 303 HOH HOH A . 
K 4 HOH 4 304 304 HOH HOH A . 
K 4 HOH 5 305 305 HOH HOH A . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SHARP     phasing          .   ? 1 
CNS       refinement       0.9 ? 2 
DENZO     'data reduction' .   ? 3 
SCALEPACK 'data scaling'   .   ? 4 
# 
_cell.entry_id           1F1T 
_cell.length_a           55.297 
_cell.length_b           55.297 
_cell.length_c           143.92 
_cell.angle_alpha        90 
_cell.angle_beta         90 
_cell.angle_gamma        120 
_cell.Z_PDB              12 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1F1T 
_symmetry.space_group_name_H-M             'P 65 2 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     hexagonal 
_symmetry.Int_Tables_number                179 
# 
_exptl.entry_id          1F1T 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   52.30 
_exptl_crystal.density_Matthews      2.58 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            298 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              4.5 
_exptl_crystal_grow.pdbx_details    
'CACODYLATE, MGCL2, SRCL2, KCL, SPERMINE, MPD, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 CACODYLATE ? ? ? 
1 2 1 MGCL2      ? ? ? 
1 3 1 SRCL2      ? ? ? 
1 4 1 KCL        ? ? ? 
1 5 1 SPERMINE   ? ? ? 
1 6 1 MPD        ? ? ? 
1 7 2 MPD        ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   1999-08-25 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             MAD 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
loop_
_diffrn_radiation_wavelength.id 
_diffrn_radiation_wavelength.wavelength 
_diffrn_radiation_wavelength.wt 
1 0.92070 1.0 
2 0.92090 1.0 
3 0.90830 1.0 
4 1.0000  1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'ALS BEAMLINE 5.0.2' 
_diffrn_source.pdbx_synchrotron_site       ALS 
_diffrn_source.pdbx_synchrotron_beamline   5.0.2 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        '0.92070, 0.92090, 0.90830, 1.0000' 
# 
_reflns.entry_id                     1F1T 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             20.0 
_reflns.d_resolution_high            2.8 
_reflns.number_obs                   3188 
_reflns.number_all                   3188 
_reflns.percent_possible_obs         99.7 
_reflns.pdbx_Rmerge_I_obs            0.057 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        40.59 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              40.3 
_reflns.R_free_details               ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 1F1T 
_refine.ls_number_reflns_obs                     3188 
_refine.ls_number_reflns_all                     3188 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             9.0 
_refine.ls_d_res_high                            2.8 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.2609 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.2609 
_refine.ls_R_factor_R_free                       0.2822 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   816 
_refine_hist.pdbx_number_atoms_ligand         39 
_refine_hist.number_atoms_solvent             5 
_refine_hist.number_atoms_total               860 
_refine_hist.d_res_high                       2.8 
_refine_hist.d_res_low                        9.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
c_bond_d                0.013 ? ? ? 'X-RAY DIFFRACTION' ? 
c_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg             1.96  ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_dihedral_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_improper_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          1F1T 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1F1T 
_struct.title                     'CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1F1T 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'U-TURN, BASE QUADRUPLE, BASE TRIPLE, GNRA TETRALOOP, 5-BROMO-URIDINE, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 2 ? 
D N N 2 ? 
E N N 2 ? 
F N N 2 ? 
G N N 2 ? 
H N N 2 ? 
I N N 2 ? 
J N N 3 ? 
K N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1F1T 
_struct_ref.pdbx_db_accession          1F1T 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              1F1T 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 38 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             1F1T 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  38 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       38 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   monomeric 
_pdbx_struct_assembly.oligomeric_count     1 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H,I,J,K 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.pdbx_parent_biol_id   ? 
_struct_biol.details               ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A A   3  "O3'" ? ? ? 1_555 A 5BU 4  P  ? ? A A   3   A 5BU 4   1_555 ? ? ? ? ? ? ?             1.600 ? ? 
covale2  covale both ? A 5BU 4  "O3'" ? ? ? 1_555 A C   5  P  ? ? A 5BU 4   A C   5   1_555 ? ? ? ? ? ? ?             1.614 ? ? 
covale3  covale both ? A C   10 "O3'" ? ? ? 1_555 A 5BU 11 P  ? ? A C   10  A 5BU 11  1_555 ? ? ? ? ? ? ?             1.604 ? ? 
covale4  covale both ? A 5BU 11 "O3'" ? ? ? 1_555 A G   12 P  ? ? A 5BU 11  A G   12  1_555 ? ? ? ? ? ? ?             1.608 ? ? 
covale5  covale both ? A G   24 "O3'" ? ? ? 1_555 A 5BU 25 P  ? ? A G   24  A 5BU 25  1_555 ? ? ? ? ? ? ?             1.657 ? ? 
covale6  covale both ? A 5BU 25 "O3'" ? ? ? 1_555 A A   26 P  ? ? A 5BU 25  A A   26  1_555 ? ? ? ? ? ? ?             1.602 ? ? 
covale7  covale both ? A A   31 "O3'" ? ? ? 1_555 A 5BU 32 P  ? ? A A   31  A 5BU 32  1_555 ? ? ? ? ? ? ?             1.586 ? ? 
covale8  covale both ? A 5BU 32 "O3'" ? ? ? 1_555 A G   33 P  ? ? A 5BU 32  A G   33  1_555 ? ? ? ? ? ? ?             1.609 ? ? 
covale9  covale both ? A A   35 "O3'" ? ? ? 1_555 A 5BU 36 P  ? ? A A   35  A 5BU 36  1_555 ? ? ? ? ? ? ?             1.592 ? ? 
covale10 covale both ? A 5BU 36 "O3'" ? ? ? 1_555 A C   37 P  ? ? A 5BU 36  A C   37  1_555 ? ? ? ? ? ? ?             1.601 ? ? 
metalc1  metalc ?    ? A A   16 OP1   ? ? ? 6_434 B SR  .  SR ? ? A A   16  A SR  201 1_555 ? ? ? ? ? ? ?             2.859 ? ? 
metalc2  metalc ?    ? A A   31 OP2   ? ? ? 1_555 F SR  .  SR ? ? A A   31  A SR  205 1_555 ? ? ? ? ? ? ?             3.204 ? ? 
metalc3  metalc ?    ? A 5BU 32 O2    ? ? ? 1_555 B SR  .  SR ? ? A 5BU 32  A SR  201 1_555 ? ? ? ? ? ? ?             2.774 ? ? 
metalc4  metalc ?    ? A G   33 OP2   ? ? ? 1_555 F SR  .  SR ? ? A G   33  A SR  205 1_555 ? ? ? ? ? ? ?             3.152 ? ? 
metalc5  metalc ?    ? A G   33 OP1   ? ? ? 1_555 G SR  .  SR ? ? A G   33  A SR  206 1_555 ? ? ? ? ? ? ?             2.617 ? ? 
metalc6  metalc ?    ? A G   34 OP1   ? ? ? 1_555 B SR  .  SR ? ? A G   34  A SR  201 1_555 ? ? ? ? ? ? ?             2.635 ? ? 
metalc7  metalc ?    ? G SR  .  SR    ? ? ? 1_555 K HOH .  O  ? ? A SR  206 A HOH 304 1_555 ? ? ? ? ? ? ?             2.722 ? ? 
hydrog1  hydrog ?    ? A G   1  N1    ? ? ? 1_555 A C   38 N3 ? ? A G   1   A C   38  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog2  hydrog ?    ? A G   1  N2    ? ? ? 1_555 A C   38 O2 ? ? A G   1   A C   38  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog3  hydrog ?    ? A G   1  O6    ? ? ? 1_555 A C   38 N4 ? ? A G   1   A C   38  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog4  hydrog ?    ? A G   2  N1    ? ? ? 1_555 A C   37 N3 ? ? A G   2   A C   37  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog5  hydrog ?    ? A G   2  N2    ? ? ? 1_555 A C   37 O2 ? ? A G   2   A C   37  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog6  hydrog ?    ? A G   2  O6    ? ? ? 1_555 A C   37 N4 ? ? A G   2   A C   37  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog7  hydrog ?    ? A A   3  N1    ? ? ? 1_555 A 5BU 36 N3 ? ? A A   3   A 5BU 36  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog8  hydrog ?    ? A A   3  N6    ? ? ? 1_555 A 5BU 36 O4 ? ? A A   3   A 5BU 36  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog9  hydrog ?    ? A 5BU 4  N3    ? ? ? 1_555 A A   35 N1 ? ? A 5BU 4   A A   35  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog10 hydrog ?    ? A 5BU 4  O4    ? ? ? 1_555 A A   35 N6 ? ? A 5BU 4   A A   35  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog11 hydrog ?    ? A C   5  N3    ? ? ? 1_555 A G   34 N1 ? ? A C   5   A G   34  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog12 hydrog ?    ? A C   5  N4    ? ? ? 1_555 A G   34 O6 ? ? A C   5   A G   34  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog13 hydrog ?    ? A C   5  O2    ? ? ? 1_555 A G   34 N2 ? ? A C   5   A G   34  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog14 hydrog ?    ? A C   6  N3    ? ? ? 1_555 A G   33 N1 ? ? A C   6   A G   33  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog15 hydrog ?    ? A C   6  N4    ? ? ? 1_555 A G   33 O6 ? ? A C   6   A G   33  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog16 hydrog ?    ? A C   6  O2    ? ? ? 1_555 A G   33 N2 ? ? A C   6   A G   33  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog17 hydrog ?    ? A C   7  N3    ? ? ? 1_555 A G   29 N1 ? ? A C   7   A G   29  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog18 hydrog ?    ? A C   7  N4    ? ? ? 1_555 A G   29 O6 ? ? A C   7   A G   29  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog19 hydrog ?    ? A C   7  O2    ? ? ? 1_555 A G   29 N2 ? ? A C   7   A G   29  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog20 hydrog ?    ? A G   8  N1    ? ? ? 1_555 A C   28 N3 ? ? A G   8   A C   28  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog21 hydrog ?    ? A G   8  N2    ? ? ? 1_555 A C   28 O2 ? ? A G   8   A C   28  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog22 hydrog ?    ? A G   8  O6    ? ? ? 1_555 A C   28 N4 ? ? A G   8   A C   28  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog23 hydrog ?    ? A C   10 N3    ? ? ? 1_555 A G   23 N1 ? ? A C   10  A G   23  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog24 hydrog ?    ? A C   10 N4    ? ? ? 1_555 A G   23 O6 ? ? A C   10  A G   23  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog25 hydrog ?    ? A C   10 O2    ? ? ? 1_555 A G   23 N2 ? ? A C   10  A G   23  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog26 hydrog ?    ? A 5BU 11 N3    ? ? ? 1_555 A A   22 N1 ? ? A 5BU 11  A A   22  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog27 hydrog ?    ? A 5BU 11 O4    ? ? ? 1_555 A A   22 N6 ? ? A 5BU 11  A A   22  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog28 hydrog ?    ? A 5BU 11 O2    ? ? ? 1_555 A A   26 N6 ? ? A 5BU 11  A A   26  1_555 ? ? ? ? ? ? '5BU-A PAIR'  ?     ? ? 
hydrog29 hydrog ?    ? A G   12 N1    ? ? ? 1_555 A C   21 N3 ? ? A G   12  A C   21  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog30 hydrog ?    ? A G   12 N2    ? ? ? 1_555 A C   21 O2 ? ? A G   12  A C   21  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog31 hydrog ?    ? A G   12 O6    ? ? ? 1_555 A C   21 N4 ? ? A G   12  A C   21  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog32 hydrog ?    ? A G   13 N1    ? ? ? 1_555 A C   20 N3 ? ? A G   13  A C   20  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog33 hydrog ?    ? A G   13 N2    ? ? ? 1_555 A C   20 O2 ? ? A G   13  A C   20  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog34 hydrog ?    ? A G   13 O6    ? ? ? 1_555 A C   20 N4 ? ? A G   13  A C   20  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog35 hydrog ?    ? A C   14 N3    ? ? ? 1_555 A G   19 N1 ? ? A C   14  A G   19  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog36 hydrog ?    ? A C   14 N4    ? ? ? 1_555 A G   19 O6 ? ? A C   14  A G   19  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog37 hydrog ?    ? A C   14 O2    ? ? ? 1_555 A G   19 N2 ? ? A C   14  A G   19  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog38 hydrog ?    ? A G   15 N2    ? ? ? 1_555 A A   18 N7 ? ? A G   15  A A   18  1_555 ? ? ? ? ? ? 'G-A MISPAIR' ?     ? ? 
hydrog39 hydrog ?    ? A G   23 N2    ? ? ? 1_555 A A   27 N1 ? ? A G   23  A A   27  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog40 hydrog ?    ? A G   23 N3    ? ? ? 1_555 A A   27 N6 ? ? A G   23  A A   27  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog41 hydrog ?    ? A G   24 N1    ? ? ? 1_555 A G   29 N7 ? ? A G   24  A G   29  1_555 ? ? ? ? ? ? TYPE_7_PAIR   ?     ? ? 
hydrog42 hydrog ?    ? A G   24 N2    ? ? ? 1_555 A G   29 O6 ? ? A G   24  A G   29  1_555 ? ? ? ? ? ? TYPE_7_PAIR   ?     ? ? 
hydrog43 hydrog ?    ? A G   29 N2    ? ? ? 1_555 A A   31 N1 ? ? A G   29  A A   31  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog44 hydrog ?    ? A G   29 N3    ? ? ? 1_555 A A   31 N6 ? ? A G   29  A A   31  1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1 OP1 ? A A   16 ? A A   16 ? 6_434 SR ? B SR . ? A SR 201 ? 1_555 O2  ? A 5BU 32 ? A 5BU 32  ? 1_555 74.9 ? 
2 OP1 ? A A   16 ? A A   16 ? 6_434 SR ? B SR . ? A SR 201 ? 1_555 OP1 ? A G   34 ? A G   34  ? 1_555 88.6 ? 
3 O2  ? A 5BU 32 ? A 5BU 32 ? 1_555 SR ? B SR . ? A SR 201 ? 1_555 OP1 ? A G   34 ? A G   34  ? 1_555 80.4 ? 
4 OP2 ? A A   31 ? A A   31 ? 1_555 SR ? F SR . ? A SR 205 ? 1_555 OP2 ? A G   33 ? A G   33  ? 1_555 93.5 ? 
5 OP1 ? A G   33 ? A G   33 ? 1_555 SR ? G SR . ? A SR 206 ? 1_555 O   ? K HOH .  ? A HOH 304 ? 1_555 59.7 ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A SR  201 ? 3 'BINDING SITE FOR RESIDUE SR A 201'  
AC2 Software A SR  205 ? 2 'BINDING SITE FOR RESIDUE SR A 205'  
AC3 Software A SR  206 ? 2 'BINDING SITE FOR RESIDUE SR A 206'  
AC4 Software A ROS 101 ? 6 'BINDING SITE FOR RESIDUE ROS A 101' 
1   ?        ? ?   ?   ? ? ?                                    
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 3 A   A 16 ? A   A 16  . ? 6_434 ? 
2  AC1 3 5BU A 32 ? 5BU A 32  . ? 1_555 ? 
3  AC1 3 G   A 34 ? G   A 34  . ? 1_555 ? 
4  AC2 2 A   A 31 ? A   A 31  . ? 1_555 ? 
5  AC2 2 G   A 33 ? G   A 33  . ? 1_555 ? 
6  AC3 2 G   A 33 ? G   A 33  . ? 1_555 ? 
7  AC3 2 HOH K .  ? HOH A 304 . ? 1_555 ? 
8  AC4 6 C   A 7  ? C   A 7   . ? 1_555 ? 
9  AC4 6 G   A 8  ? G   A 8   . ? 1_555 ? 
10 AC4 6 G   A 24 ? G   A 24  . ? 1_555 ? 
11 AC4 6 C   A 28 ? C   A 28  . ? 1_555 ? 
12 AC4 6 G   A 29 ? G   A 29  . ? 1_555 ? 
13 AC4 6 A   A 30 ? A   A 30  . ? 1_555 ? 
# 
_pdbx_validate_close_contact.id               1 
_pdbx_validate_close_contact.PDB_model_num    1 
_pdbx_validate_close_contact.auth_atom_id_1   OP2 
_pdbx_validate_close_contact.auth_asym_id_1   A 
_pdbx_validate_close_contact.auth_comp_id_1   5BU 
_pdbx_validate_close_contact.auth_seq_id_1    4 
_pdbx_validate_close_contact.PDB_ins_code_1   ? 
_pdbx_validate_close_contact.label_alt_id_1   ? 
_pdbx_validate_close_contact.auth_atom_id_2   O 
_pdbx_validate_close_contact.auth_asym_id_2   A 
_pdbx_validate_close_contact.auth_comp_id_2   HOH 
_pdbx_validate_close_contact.auth_seq_id_2    305 
_pdbx_validate_close_contact.PDB_ins_code_2   ? 
_pdbx_validate_close_contact.label_alt_id_2   ? 
_pdbx_validate_close_contact.dist             1.94 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "O3'" A C 6  ? ? P     A C 7  ? ? OP2   A C 7  ? ? 117.38 110.50 6.88  1.10 Y 
2 1 N9    A G 8  ? ? "C1'" A G 8  ? ? "C2'" A G 8  ? ? 123.88 114.00 9.88  1.30 N 
3 1 N9    A G 15 ? ? "C1'" A G 15 ? ? "C2'" A G 15 ? ? 104.31 112.00 -7.69 1.10 N 
4 1 N9    A G 24 ? ? "C1'" A G 24 ? ? "C2'" A G 24 ? ? 122.34 114.00 8.34  1.30 N 
5 1 N9    A G 29 ? ? "C1'" A G 29 ? ? "C2'" A G 29 ? ? 124.62 114.00 10.62 1.30 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 G A 23 ? ? 0.052 'SIDE CHAIN' 
2 1 G A 24 ? ? 0.063 'SIDE CHAIN' 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A 5BU 4  A 5BU 4  ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
2 A 5BU 11 A 5BU 11 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
3 A 5BU 25 A 5BU 25 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
4 A 5BU 32 A 5BU 32 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
5 A 5BU 36 A 5BU 36 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      INTERCALATION 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
5BU P      P  N N 1   
5BU OP1    O  N N 2   
5BU OP2    O  N N 3   
5BU OP3    O  N N 4   
5BU "O5'"  O  N N 5   
5BU "C5'"  C  N N 6   
5BU "C4'"  C  N R 7   
5BU "O4'"  O  N N 8   
5BU "C3'"  C  N S 9   
5BU "O3'"  O  N N 10  
5BU "C2'"  C  N R 11  
5BU "O2'"  O  N N 12  
5BU "C1'"  C  N R 13  
5BU N1     N  N N 14  
5BU C2     C  N N 15  
5BU O2     O  N N 16  
5BU N3     N  N N 17  
5BU C4     C  N N 18  
5BU O4     O  N N 19  
5BU C5     C  N N 20  
5BU C6     C  N N 21  
5BU BR     BR N N 22  
5BU HOP2   H  N N 23  
5BU HOP3   H  N N 24  
5BU "H5'"  H  N N 25  
5BU "H5''" H  N N 26  
5BU "H4'"  H  N N 27  
5BU "H3'"  H  N N 28  
5BU "HO3'" H  N N 29  
5BU "H2'"  H  N N 30  
5BU "HO2'" H  N N 31  
5BU "H1'"  H  N N 32  
5BU H3     H  N N 33  
5BU H6     H  N N 34  
A   OP3    O  N N 35  
A   P      P  N N 36  
A   OP1    O  N N 37  
A   OP2    O  N N 38  
A   "O5'"  O  N N 39  
A   "C5'"  C  N N 40  
A   "C4'"  C  N R 41  
A   "O4'"  O  N N 42  
A   "C3'"  C  N S 43  
A   "O3'"  O  N N 44  
A   "C2'"  C  N R 45  
A   "O2'"  O  N N 46  
A   "C1'"  C  N R 47  
A   N9     N  Y N 48  
A   C8     C  Y N 49  
A   N7     N  Y N 50  
A   C5     C  Y N 51  
A   C6     C  Y N 52  
A   N6     N  N N 53  
A   N1     N  Y N 54  
A   C2     C  Y N 55  
A   N3     N  Y N 56  
A   C4     C  Y N 57  
A   HOP3   H  N N 58  
A   HOP2   H  N N 59  
A   "H5'"  H  N N 60  
A   "H5''" H  N N 61  
A   "H4'"  H  N N 62  
A   "H3'"  H  N N 63  
A   "HO3'" H  N N 64  
A   "H2'"  H  N N 65  
A   "HO2'" H  N N 66  
A   "H1'"  H  N N 67  
A   H8     H  N N 68  
A   H61    H  N N 69  
A   H62    H  N N 70  
A   H2     H  N N 71  
C   OP3    O  N N 72  
C   P      P  N N 73  
C   OP1    O  N N 74  
C   OP2    O  N N 75  
C   "O5'"  O  N N 76  
C   "C5'"  C  N N 77  
C   "C4'"  C  N R 78  
C   "O4'"  O  N N 79  
C   "C3'"  C  N S 80  
C   "O3'"  O  N N 81  
C   "C2'"  C  N R 82  
C   "O2'"  O  N N 83  
C   "C1'"  C  N R 84  
C   N1     N  N N 85  
C   C2     C  N N 86  
C   O2     O  N N 87  
C   N3     N  N N 88  
C   C4     C  N N 89  
C   N4     N  N N 90  
C   C5     C  N N 91  
C   C6     C  N N 92  
C   HOP3   H  N N 93  
C   HOP2   H  N N 94  
C   "H5'"  H  N N 95  
C   "H5''" H  N N 96  
C   "H4'"  H  N N 97  
C   "H3'"  H  N N 98  
C   "HO3'" H  N N 99  
C   "H2'"  H  N N 100 
C   "HO2'" H  N N 101 
C   "H1'"  H  N N 102 
C   H41    H  N N 103 
C   H42    H  N N 104 
C   H5     H  N N 105 
C   H6     H  N N 106 
G   OP3    O  N N 107 
G   P      P  N N 108 
G   OP1    O  N N 109 
G   OP2    O  N N 110 
G   "O5'"  O  N N 111 
G   "C5'"  C  N N 112 
G   "C4'"  C  N R 113 
G   "O4'"  O  N N 114 
G   "C3'"  C  N S 115 
G   "O3'"  O  N N 116 
G   "C2'"  C  N R 117 
G   "O2'"  O  N N 118 
G   "C1'"  C  N R 119 
G   N9     N  Y N 120 
G   C8     C  Y N 121 
G   N7     N  Y N 122 
G   C5     C  Y N 123 
G   C6     C  N N 124 
G   O6     O  N N 125 
G   N1     N  N N 126 
G   C2     C  N N 127 
G   N2     N  N N 128 
G   N3     N  N N 129 
G   C4     C  Y N 130 
G   HOP3   H  N N 131 
G   HOP2   H  N N 132 
G   "H5'"  H  N N 133 
G   "H5''" H  N N 134 
G   "H4'"  H  N N 135 
G   "H3'"  H  N N 136 
G   "HO3'" H  N N 137 
G   "H2'"  H  N N 138 
G   "HO2'" H  N N 139 
G   "H1'"  H  N N 140 
G   H8     H  N N 141 
G   H1     H  N N 142 
G   H21    H  N N 143 
G   H22    H  N N 144 
HOH O      O  N N 145 
HOH H1     H  N N 146 
HOH H2     H  N N 147 
ROS C1     C  Y N 148 
ROS C2     C  Y N 149 
ROS C3     C  Y N 150 
ROS O2     O  Y N 151 
ROS C4     C  Y N 152 
ROS C5     C  Y N 153 
ROS C6     C  Y N 154 
ROS C7     C  Y N 155 
ROS C8     C  Y N 156 
ROS C9     C  Y N 157 
ROS C10    C  Y N 158 
ROS C11    C  Y N 159 
ROS C12    C  Y N 160 
ROS C13    C  Y N 161 
ROS C14    C  Y N 162 
ROS C15    C  Y N 163 
ROS C16    C  Y N 164 
ROS C17    C  Y N 165 
ROS C18    C  Y N 166 
ROS C19    C  Y N 167 
ROS N1     N  N N 168 
ROS C20    C  N N 169 
ROS C21    C  N N 170 
ROS N2     N  N N 171 
ROS C22    C  N N 172 
ROS C23    C  N N 173 
ROS H2     H  N N 174 
ROS H5     H  N N 175 
ROS H7     H  N N 176 
ROS H8     H  N N 177 
ROS H12    H  N N 178 
ROS H13    H  N N 179 
ROS H15    H  N N 180 
ROS H16    H  N N 181 
ROS H17    H  N N 182 
ROS H18    H  N N 183 
ROS H19    H  N N 184 
ROS H201   H  N N 185 
ROS H202   H  N N 186 
ROS H203   H  N N 187 
ROS H211   H  N N 188 
ROS H212   H  N N 189 
ROS H213   H  N N 190 
ROS H221   H  N N 191 
ROS H222   H  N N 192 
ROS H223   H  N N 193 
ROS H231   H  N N 194 
ROS H232   H  N N 195 
ROS H233   H  N N 196 
SR  SR     SR N N 197 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5BU P     OP1    doub N N 1   
5BU P     OP2    sing N N 2   
5BU P     OP3    sing N N 3   
5BU P     "O5'"  sing N N 4   
5BU OP2   HOP2   sing N N 5   
5BU OP3   HOP3   sing N N 6   
5BU "O5'" "C5'"  sing N N 7   
5BU "C5'" "C4'"  sing N N 8   
5BU "C5'" "H5'"  sing N N 9   
5BU "C5'" "H5''" sing N N 10  
5BU "C4'" "O4'"  sing N N 11  
5BU "C4'" "C3'"  sing N N 12  
5BU "C4'" "H4'"  sing N N 13  
5BU "O4'" "C1'"  sing N N 14  
5BU "C3'" "O3'"  sing N N 15  
5BU "C3'" "C2'"  sing N N 16  
5BU "C3'" "H3'"  sing N N 17  
5BU "O3'" "HO3'" sing N N 18  
5BU "C2'" "O2'"  sing N N 19  
5BU "C2'" "C1'"  sing N N 20  
5BU "C2'" "H2'"  sing N N 21  
5BU "O2'" "HO2'" sing N N 22  
5BU "C1'" N1     sing N N 23  
5BU "C1'" "H1'"  sing N N 24  
5BU N1    C2     sing N N 25  
5BU N1    C6     sing N N 26  
5BU C2    O2     doub N N 27  
5BU C2    N3     sing N N 28  
5BU N3    C4     sing N N 29  
5BU N3    H3     sing N N 30  
5BU C4    O4     doub N N 31  
5BU C4    C5     sing N N 32  
5BU C5    C6     doub N N 33  
5BU C5    BR     sing N N 34  
5BU C6    H6     sing N N 35  
A   OP3   P      sing N N 36  
A   OP3   HOP3   sing N N 37  
A   P     OP1    doub N N 38  
A   P     OP2    sing N N 39  
A   P     "O5'"  sing N N 40  
A   OP2   HOP2   sing N N 41  
A   "O5'" "C5'"  sing N N 42  
A   "C5'" "C4'"  sing N N 43  
A   "C5'" "H5'"  sing N N 44  
A   "C5'" "H5''" sing N N 45  
A   "C4'" "O4'"  sing N N 46  
A   "C4'" "C3'"  sing N N 47  
A   "C4'" "H4'"  sing N N 48  
A   "O4'" "C1'"  sing N N 49  
A   "C3'" "O3'"  sing N N 50  
A   "C3'" "C2'"  sing N N 51  
A   "C3'" "H3'"  sing N N 52  
A   "O3'" "HO3'" sing N N 53  
A   "C2'" "O2'"  sing N N 54  
A   "C2'" "C1'"  sing N N 55  
A   "C2'" "H2'"  sing N N 56  
A   "O2'" "HO2'" sing N N 57  
A   "C1'" N9     sing N N 58  
A   "C1'" "H1'"  sing N N 59  
A   N9    C8     sing Y N 60  
A   N9    C4     sing Y N 61  
A   C8    N7     doub Y N 62  
A   C8    H8     sing N N 63  
A   N7    C5     sing Y N 64  
A   C5    C6     sing Y N 65  
A   C5    C4     doub Y N 66  
A   C6    N6     sing N N 67  
A   C6    N1     doub Y N 68  
A   N6    H61    sing N N 69  
A   N6    H62    sing N N 70  
A   N1    C2     sing Y N 71  
A   C2    N3     doub Y N 72  
A   C2    H2     sing N N 73  
A   N3    C4     sing Y N 74  
C   OP3   P      sing N N 75  
C   OP3   HOP3   sing N N 76  
C   P     OP1    doub N N 77  
C   P     OP2    sing N N 78  
C   P     "O5'"  sing N N 79  
C   OP2   HOP2   sing N N 80  
C   "O5'" "C5'"  sing N N 81  
C   "C5'" "C4'"  sing N N 82  
C   "C5'" "H5'"  sing N N 83  
C   "C5'" "H5''" sing N N 84  
C   "C4'" "O4'"  sing N N 85  
C   "C4'" "C3'"  sing N N 86  
C   "C4'" "H4'"  sing N N 87  
C   "O4'" "C1'"  sing N N 88  
C   "C3'" "O3'"  sing N N 89  
C   "C3'" "C2'"  sing N N 90  
C   "C3'" "H3'"  sing N N 91  
C   "O3'" "HO3'" sing N N 92  
C   "C2'" "O2'"  sing N N 93  
C   "C2'" "C1'"  sing N N 94  
C   "C2'" "H2'"  sing N N 95  
C   "O2'" "HO2'" sing N N 96  
C   "C1'" N1     sing N N 97  
C   "C1'" "H1'"  sing N N 98  
C   N1    C2     sing N N 99  
C   N1    C6     sing N N 100 
C   C2    O2     doub N N 101 
C   C2    N3     sing N N 102 
C   N3    C4     doub N N 103 
C   C4    N4     sing N N 104 
C   C4    C5     sing N N 105 
C   N4    H41    sing N N 106 
C   N4    H42    sing N N 107 
C   C5    C6     doub N N 108 
C   C5    H5     sing N N 109 
C   C6    H6     sing N N 110 
G   OP3   P      sing N N 111 
G   OP3   HOP3   sing N N 112 
G   P     OP1    doub N N 113 
G   P     OP2    sing N N 114 
G   P     "O5'"  sing N N 115 
G   OP2   HOP2   sing N N 116 
G   "O5'" "C5'"  sing N N 117 
G   "C5'" "C4'"  sing N N 118 
G   "C5'" "H5'"  sing N N 119 
G   "C5'" "H5''" sing N N 120 
G   "C4'" "O4'"  sing N N 121 
G   "C4'" "C3'"  sing N N 122 
G   "C4'" "H4'"  sing N N 123 
G   "O4'" "C1'"  sing N N 124 
G   "C3'" "O3'"  sing N N 125 
G   "C3'" "C2'"  sing N N 126 
G   "C3'" "H3'"  sing N N 127 
G   "O3'" "HO3'" sing N N 128 
G   "C2'" "O2'"  sing N N 129 
G   "C2'" "C1'"  sing N N 130 
G   "C2'" "H2'"  sing N N 131 
G   "O2'" "HO2'" sing N N 132 
G   "C1'" N9     sing N N 133 
G   "C1'" "H1'"  sing N N 134 
G   N9    C8     sing Y N 135 
G   N9    C4     sing Y N 136 
G   C8    N7     doub Y N 137 
G   C8    H8     sing N N 138 
G   N7    C5     sing Y N 139 
G   C5    C6     sing N N 140 
G   C5    C4     doub Y N 141 
G   C6    O6     doub N N 142 
G   C6    N1     sing N N 143 
G   N1    C2     sing N N 144 
G   N1    H1     sing N N 145 
G   C2    N2     sing N N 146 
G   C2    N3     doub N N 147 
G   N2    H21    sing N N 148 
G   N2    H22    sing N N 149 
G   N3    C4     sing N N 150 
HOH O     H1     sing N N 151 
HOH O     H2     sing N N 152 
ROS C1    C2     sing Y N 153 
ROS C1    C13    sing Y N 154 
ROS C1    N1     doub N N 155 
ROS C2    C3     doub Y N 156 
ROS C2    H2     sing N N 157 
ROS C3    O2     sing Y N 158 
ROS C3    C11    sing Y N 159 
ROS O2    C4     sing Y N 160 
ROS C4    C5     sing Y N 161 
ROS C4    C9     doub Y N 162 
ROS C5    C6     doub Y N 163 
ROS C5    H5     sing N N 164 
ROS C6    C7     sing Y N 165 
ROS C6    N2     sing N N 166 
ROS C7    C8     doub Y N 167 
ROS C7    H7     sing N N 168 
ROS C8    C9     sing Y N 169 
ROS C8    H8     sing N N 170 
ROS C9    C10    sing Y N 171 
ROS C10   C11    doub Y N 172 
ROS C10   C14    sing Y N 173 
ROS C11   C12    sing Y N 174 
ROS C12   C13    doub Y N 175 
ROS C12   H12    sing N N 176 
ROS C13   H13    sing N N 177 
ROS C14   C15    doub Y N 178 
ROS C14   C19    sing Y N 179 
ROS C15   C16    sing Y N 180 
ROS C15   H15    sing N N 181 
ROS C16   C17    doub Y N 182 
ROS C16   H16    sing N N 183 
ROS C17   C18    sing Y N 184 
ROS C17   H17    sing N N 185 
ROS C18   C19    doub Y N 186 
ROS C18   H18    sing N N 187 
ROS C19   H19    sing N N 188 
ROS N1    C20    sing N N 189 
ROS N1    C21    sing N N 190 
ROS C20   H201   sing N N 191 
ROS C20   H202   sing N N 192 
ROS C20   H203   sing N N 193 
ROS C21   H211   sing N N 194 
ROS C21   H212   sing N N 195 
ROS C21   H213   sing N N 196 
ROS N2    C22    sing N N 197 
ROS N2    C23    sing N N 198 
ROS C22   H221   sing N N 199 
ROS C22   H222   sing N N 200 
ROS C22   H223   sing N N 201 
ROS C23   H231   sing N N 202 
ROS C23   H232   sing N N 203 
ROS C23   H233   sing N N 204 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1F1T 'double helix'         
1F1T 'a-form double helix'  
1F1T tetraloop              
1F1T 'bulge loop'           
1F1T 'mismatched base pair' 
1F1T 'internal loop'        
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G   1  1_555 A C   38 1_555 -0.785 -0.534 0.159  -4.834 -1.906  -6.072  1  A_G1:C38_A    A 1  ? A 38 ? 19 1 
1 A G   2  1_555 A C   37 1_555 -0.659 -0.859 -0.304 -1.413 -19.985 3.072   2  A_G2:C37_A    A 2  ? A 37 ? 19 1 
1 A A   3  1_555 A 5BU 36 1_555 0.099  -0.263 0.277  7.079  -9.795  1.960   3  A_A3:5BU36_A  A 3  ? A 36 ? 20 1 
1 A 5BU 4  1_555 A A   35 1_555 -0.544 -0.386 -0.276 11.008 -2.274  -3.505  4  A_5BU4:A35_A  A 4  ? A 35 ? 20 1 
1 A C   5  1_555 A G   34 1_555 -0.262 -0.205 -0.396 12.129 -12.501 3.853   5  A_C5:G34_A    A 5  ? A 34 ? 19 1 
1 A C   6  1_555 A G   33 1_555 0.277  -0.017 0.048  -0.391 -8.314  3.199   6  A_C6:G33_A    A 6  ? A 33 ? 19 1 
1 A C   7  1_555 A G   29 1_555 0.691  0.011  0.351  2.167  -3.222  0.367   7  A_C7:G29_A    A 7  ? A 29 ? 19 1 
1 A G   8  1_555 A C   28 1_555 -1.097 -0.267 0.101  -2.733 2.302   -0.458  8  A_G8:C28_A    A 8  ? A 28 ? 19 1 
1 A C   10 1_555 A G   23 1_555 0.016  -0.317 -0.135 -4.922 1.609   -4.179  9  A_C10:G23_A   A 10 ? A 23 ? 19 1 
1 A 5BU 11 1_555 A A   22 1_555 0.392  -0.630 -0.096 4.327  -3.682  0.483   10 A_5BU11:A22_A A 11 ? A 22 ? 20 1 
1 A G   12 1_555 A C   21 1_555 -0.015 -0.369 -0.175 2.704  -13.856 4.466   11 A_G12:C21_A   A 12 ? A 21 ? 19 1 
1 A G   13 1_555 A C   20 1_555 -0.182 -0.238 -0.048 1.130  -11.956 10.074  12 A_G13:C20_A   A 13 ? A 20 ? 19 1 
1 A C   14 1_555 A G   19 1_555 0.477  0.007  -0.248 -2.205 -0.923  -0.746  13 A_C14:G19_A   A 14 ? A 19 ? 19 1 
1 A G   15 1_555 A A   18 1_555 7.439  -5.000 -0.028 9.026  5.568   -24.202 14 A_G15:A18_A   A 15 ? A 18 ? ?  ? 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G   1  1_555 A C   38 1_555 A G   2  1_555 A C   37 1_555 -0.136 -0.891 3.232 5.028  -4.007 30.090 -0.892  1.244  3.256 -7.609 
-9.549 30.754 1  AA_G1G2:C37C38_AA     A 1  ? A 38 ? A 2  ? A 37 ? 
1 A G   2  1_555 A C   37 1_555 A A   3  1_555 A 5BU 36 1_555 0.640  -1.544 2.963 -3.744 6.957  29.989 -4.019  -1.806 2.455 13.159 
7.082  30.990 2  AA_G2A3:5BU36C37_AA   A 2  ? A 37 ? A 3  ? A 36 ? 
1 A A   3  1_555 A 5BU 36 1_555 A 5BU 4  1_555 A A   35 1_555 0.210  -1.772 3.269 4.815  2.052  32.222 -3.506  0.452  3.151 3.667  
-8.605 32.633 3  AA_A35BU4:A355BU36_AA A 3  ? A 36 ? A 4  ? A 35 ? 
1 A 5BU 4  1_555 A A   35 1_555 A C   5  1_555 A G   34 1_555 -0.040 -2.501 3.331 -0.826 7.910  24.161 -7.732  -0.122 2.403 18.274 
1.907  25.417 4  AA_5BU4C5:G34A35_AA   A 4  ? A 35 ? A 5  ? A 34 ? 
1 A C   5  1_555 A G   34 1_555 A C   6  1_555 A G   33 1_555 0.349  -2.126 3.585 -2.456 10.826 37.864 -4.444  -0.811 2.866 16.261 
3.689  39.400 5  AA_C5C6:G33G34_AA     A 5  ? A 34 ? A 6  ? A 33 ? 
1 A C   6  1_555 A G   33 1_555 A C   7  1_555 A G   29 1_555 2.310  -1.226 3.000 -1.657 5.130  52.579 -1.673  -2.692 2.808 5.774  
1.865  52.835 6  AA_C6C7:G29G33_AA     A 6  ? A 33 ? A 7  ? A 29 ? 
1 A C   7  1_555 A G   29 1_555 A G   8  1_555 A C   28 1_555 0.837  -2.197 7.008 1.248  12.221 4.086  -32.747 -1.364 0.224 71.299 
-7.281 12.944 7  AA_C7G8:C28G29_AA     A 7  ? A 29 ? A 8  ? A 28 ? 
1 A G   8  1_555 A C   28 1_555 A C   10 1_555 A G   23 1_555 1.513  1.565  3.319 2.810  1.619  90.910 1.065   -1.005 3.376 1.135  
-1.971 90.956 8  AA_G8C10:G23C28_AA    A 8  ? A 28 ? A 10 ? A 23 ? 
1 A C   10 1_555 A G   23 1_555 A 5BU 11 1_555 A A   22 1_555 -0.516 -1.588 3.089 -3.100 1.197  34.417 -2.846  0.418  3.067 2.017  
5.223  34.573 9  AA_C105BU11:A22G23_AA A 10 ? A 23 ? A 11 ? A 22 ? 
1 A 5BU 11 1_555 A A   22 1_555 A G   12 1_555 A C   21 1_555 -0.185 -1.652 3.259 1.885  9.014  29.000 -4.816  0.702  2.622 17.453 
-3.649 30.397 10 AA_5BU11G12:C21A22_AA A 11 ? A 22 ? A 12 ? A 21 ? 
1 A G   12 1_555 A C   21 1_555 A G   13 1_555 A C   20 1_555 0.665  -1.660 3.186 1.042  9.528  28.678 -4.925  -1.087 2.538 18.592 
-2.033 30.206 11 AA_G12G13:C20C21_AA   A 12 ? A 21 ? A 13 ? A 20 ? 
1 A G   13 1_555 A C   20 1_555 A C   14 1_555 A G   19 1_555 0.368  -1.797 3.366 3.353  5.522  36.650 -3.548  -0.132 3.092 8.698  
-5.282 37.196 12 AA_G13C14:G19C20_AA   A 13 ? A 20 ? A 14 ? A 19 ? 
1 A C   14 1_555 A G   19 1_555 A G   15 1_555 A A   18 1_555 -1.286 -2.130 2.959 1.581  5.913  49.635 -2.891  1.621  2.666 7.013  
-1.875 49.988 13 AA_C14G15:A18G19_AA   A 14 ? A 19 ? A 15 ? A 18 ? 
# 
_atom_sites.entry_id                    1F1T 
_atom_sites.fract_transf_matrix[1][1]   0.018084 
_atom_sites.fract_transf_matrix[1][2]   0.010441 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.020882 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.006948 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BR 
C  
N  
O  
P  
SR 
# 
loop_