HEADER OXIDOREDUCTASE 19-MAY-00 1F1U TITLE CRYSTAL STRUCTURE OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM TITLE 2 ARTHROBACTER GLOBIFORMIS (NATIVE, LOW TEMPERATURE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOPROTOCATECHUATE 2,3-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3,4-DIHYDROXYPHENYLACETATE 2,3-DIOXYGENASE; COMPND 5 EC: 1.13.11.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 STRAIN: CM-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIOXYGENASE, EXTRADIOL, MANGANESE, BIODEGRADATION, AROMATIC, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,J.D.LIPSCOMB,L.P.WACKETT,L.QUE JR.,D.H.OHLENDORF REVDAT 6 07-FEB-24 1F1U 1 REMARK LINK REVDAT 5 11-OCT-17 1F1U 1 REMARK REVDAT 4 13-JUL-11 1F1U 1 VERSN REVDAT 3 24-FEB-09 1F1U 1 VERSN REVDAT 2 11-MAY-04 1F1U 1 JRNL REVDAT 1 10-JUN-03 1F1U 0 JRNL AUTH M.W.VETTING,L.P.WACKETT,L.QUE JR.,J.D.LIPSCOMB,D.H.OHLENDORF JRNL TITL CRYSTALLOGRAPHIC COMPARISON OF MANGANESE- AND IRON-DEPENDENT JRNL TITL 2 HOMOPROTOCATECHUATE 2,3-DIOXYGENASES. JRNL REF J.BACTERIOL. V. 186 1945 2004 JRNL REFN ISSN 0021-9193 JRNL PMID 15028678 JRNL DOI 10.1128/JB.186.7.1945-1958.2004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.K.WHITING,Y.R.BOLDT,M.P.HENDRICH,L.P.WACKETT,L.QUE JR REMARK 1 TITL MANGANESE(II)-DEPENDENT EXTRADIOL-CLEAVING CATECHOL REMARK 1 TITL 2 DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS CM-2 REMARK 1 REF BIOCHEMISTRY V. 35 160 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI951979H REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.R.BOLDT,M.J.SADOWSKY,L.B.ELLIS,L.QUE JR,L.P.WACKETT REMARK 1 TITL A MANGANESE-DEPENDENT DIOXYGENASE FROM ARTHROBACTER REMARK 1 TITL 2 GLOBIFORMIS CM-2 BELONGS TO THE MAJOR EXTRADIOL DIOXYGENASE REMARK 1 TITL 3 FAMILY REMARK 1 REF J.BACTERIOL. V. 177 1225 1995 REMARK 1 REFN ISSN 0021-9193 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.R.BOLDT,A.K.WHITING,M.L.WAGNER,M.J.SADOWSKY,L.QUE JR, REMARK 1 AUTH 2 L.P.WACKETT REMARK 1 TITL MANGANESE(II) ACTIVE SITE MUTANTS OF REMARK 1 TITL 2 3,4-DIHYDROXYPHENYLACETATE 2,3-DIOXYGENASE FROM ARTHROBACTER REMARK 1 TITL 3 GLOBIFORMIS STRAIN CM-2. REMARK 1 REF BIOCHEMISTRY V. 36 2147 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI962362I REMARK 1 REFERENCE 4 REMARK 1 AUTH L.QUE JR,J.WIDOM,R.L.CRAWFORD REMARK 1 TITL 3,4-DIHYDROXYPHENYLACETATE 2,3-DIOXYGENASE. A MANGANESE(II) REMARK 1 TITL 2 DIOXYGENASE FROM BACILLUS BREVIS. REMARK 1 REF J.BIOL.CHEM. V. 256 10941 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 111428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5623 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 662 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.040 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MG ACETATE NA CACODYLATE. REMARK 280 DATA WAS COLLECTED WITH ADDED GLYCEROL AS A CRYOPROTECTANT., PH REMARK 280 6.8, BATCH CRYSTALLIZATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.52000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.90000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.52000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER CONSTRUCTED FROM REMARK 300 CHAIN A AND CHAIN B WITH A SYMMETRY PARTNER GENERATED BY THE TWO- REMARK 300 FOLD. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 949 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1086 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 730 O HOH B 1262 1.99 REMARK 500 O HOH A 1195 O HOH A 1261 2.02 REMARK 500 NZ LYS A 110 O HOH A 1261 2.14 REMARK 500 O HOH B 1007 O HOH B 1262 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1261 O HOH B 1262 1545 1.12 REMARK 500 O HOH A 1134 O HOH B 1262 1545 1.91 REMARK 500 O HOH A 1261 O HOH B 1007 1545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 131 CG GLU B 131 CD 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 CYS A 18 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 120 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 47 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 120 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 120 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 162 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 176 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG B 265 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 -41.15 -132.54 REMARK 500 GLN A 197 35.62 -90.67 REMARK 500 SER A 251 -18.43 85.33 REMARK 500 GLN A 271 120.49 85.64 REMARK 500 GLN A 271 110.44 85.64 REMARK 500 ALA B 19 -40.32 -130.39 REMARK 500 GLN B 197 31.70 -90.83 REMARK 500 SER B 251 -19.98 85.57 REMARK 500 GLN B 271 119.37 85.14 REMARK 500 GLN B 271 107.07 85.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 126 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 HIS A 214 NE2 95.6 REMARK 620 3 GLU A 267 OE1 86.7 97.3 REMARK 620 4 HOH A1271 O 91.4 93.4 169.3 REMARK 620 5 HOH A1272 O 151.4 109.2 103.5 73.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 155 NE2 REMARK 620 2 HIS B 214 NE2 94.6 REMARK 620 3 GLU B 267 OE1 84.0 96.6 REMARK 620 4 HOH B1273 O 94.3 94.6 168.7 REMARK 620 5 HOH B1274 O 150.5 111.9 104.6 71.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F1R RELATED DB: PDB REMARK 900 SAME PROTEIN REFINED AGAINST A DATA SET COLLECTED AT ROOM REMARK 900 TEMPERATURE AND TO A LOWER RESOLUTION. REMARK 900 RELATED ID: 1F1V RELATED DB: PDB REMARK 900 SAME PROTEIN, SAME SOURCE, COMPLEXED WITH 3,4-DIHYDROXYPHENYLACETATE REMARK 900 RELATED ID: 1F1X RELATED DB: PDB REMARK 900 SAME PROTEIN FROM BREVIBACTERIUM FUSCUM, C-TERMINAL REMOVED WITH REMARK 900 TRYPSIN REMARK 900 RELATED ID: 1F1Y RELATED DB: PDB REMARK 900 SAME PROTEIN FROM BREVIBACTERIUM FUSCUM, C-TERMINAL NOT REMOVED REMARK 900 WITH TRYPSIN DBREF 1F1U A 1 323 UNP Q44048 Q44048_ARTGO 1 322 DBREF 1F1U B 1 323 UNP Q44048 Q44048_ARTGO 1 322 SEQADV 1F1U GLY A 233 UNP Q44048 SEE REMARK 999 SEQADV 1F1U ALA A 234 UNP Q44048 ARG 233 SEE REMARK 999 SEQADV 1F1U LEU A 235 UNP Q44048 PRO 234 SEE REMARK 999 SEQADV 1F1U ARG A 236 UNP Q44048 CYS 235 SEE REMARK 999 SEQADV 1F1U ILE A 237 UNP Q44048 ALA 236 SEE REMARK 999 SEQADV 1F1U ASP A 239 UNP Q44048 ALA 238 SEE REMARK 999 SEQADV 1F1U ARG A 240 UNP Q44048 THR 239 SEE REMARK 999 SEQADV 1F1U ILE A 241 UNP Q44048 GLY 240 SEE REMARK 999 SEQADV 1F1U GLU A 242 UNP Q44048 SER 241 SEE REMARK 999 SEQADV 1F1U ARG A 243 UNP Q44048 ASN 242 SEE REMARK 999 SEQADV 1F1U GLY A 246 UNP Q44048 ARG 245 SEE REMARK 999 SEQADV 1F1U ARG A 247 UNP Q44048 PRO 246 SEE REMARK 999 SEQADV 1F1U HIS A 248 UNP Q44048 ALA 247 SEE REMARK 999 SEQADV 1F1U GLY A 249 UNP Q44048 PRO 248 SEE REMARK 999 SEQADV 1F1U GLY B 233 UNP Q44048 SEE REMARK 999 SEQADV 1F1U ALA B 234 UNP Q44048 ARG 233 SEE REMARK 999 SEQADV 1F1U LEU B 235 UNP Q44048 PRO 234 SEE REMARK 999 SEQADV 1F1U ARG B 236 UNP Q44048 CYS 235 SEE REMARK 999 SEQADV 1F1U ILE B 237 UNP Q44048 ALA 236 SEE REMARK 999 SEQADV 1F1U ASP B 239 UNP Q44048 ALA 238 SEE REMARK 999 SEQADV 1F1U ARG B 240 UNP Q44048 THR 239 SEE REMARK 999 SEQADV 1F1U ILE B 241 UNP Q44048 GLY 240 SEE REMARK 999 SEQADV 1F1U GLU B 242 UNP Q44048 SER 241 SEE REMARK 999 SEQADV 1F1U ARG B 243 UNP Q44048 ASN 242 SEE REMARK 999 SEQADV 1F1U GLY B 246 UNP Q44048 ARG 245 SEE REMARK 999 SEQADV 1F1U ARG B 247 UNP Q44048 PRO 246 SEE REMARK 999 SEQADV 1F1U HIS B 248 UNP Q44048 ALA 247 SEE REMARK 999 SEQADV 1F1U GLY B 249 UNP Q44048 PRO 248 SEE REMARK 999 SEQRES 1 A 323 MET THR ASN PHE VAL PRO THR PRO SER VAL PRO ALA PRO SEQRES 2 A 323 ASP ILE VAL ARG CYS ALA TYR MET GLU ILE VAL VAL THR SEQRES 3 A 323 ASP LEU ALA LYS SER ARG GLU PHE TYR VAL ASP VAL LEU SEQRES 4 A 323 GLY LEU HIS VAL THR GLU GLU ASP GLU ASN THR ILE TYR SEQRES 5 A 323 LEU ARG SER LEU GLU GLU PHE ILE HIS HIS ASN LEU VAL SEQRES 6 A 323 LEU ARG GLN GLY PRO ILE ALA ALA VAL ALA ALA PHE ALA SEQRES 7 A 323 TYR ARG VAL LYS SER PRO ALA GLU VAL ASP ALA ALA GLU SEQRES 8 A 323 ALA TYR TYR LYS GLU LEU GLY CYS ARG THR GLU ARG ARG SEQRES 9 A 323 LYS GLU GLY PHE THR LYS GLY ILE GLY ASP SER VAL ARG SEQRES 10 A 323 VAL GLU ASP PRO LEU GLY PHE PRO TYR GLU PHE PHE TYR SEQRES 11 A 323 GLU THR GLU HIS VAL GLU ARG LEU THR GLN ARG TYR ASP SEQRES 12 A 323 LEU TYR SER ALA GLY GLU LEU VAL ARG LEU ASP HIS PHE SEQRES 13 A 323 ASN GLN VAL THR PRO ASP VAL PRO ARG GLY ARG ALA TYR SEQRES 14 A 323 LEU GLU ASP LEU GLY PHE ARG VAL SER GLU ASP ILE LYS SEQRES 15 A 323 ASP SER ASP GLY VAL THR TYR ALA ALA TRP MET HIS ARG SEQRES 16 A 323 LYS GLN THR VAL HIS ASP THR ALA LEU THR GLY GLY ASN SEQRES 17 A 323 GLY PRO ARG MET HIS HIS VAL ALA PHE ALA THR HIS GLU SEQRES 18 A 323 LYS HIS ASN ILE ILE GLN ILE CYS ASP LYS MET GLY ALA SEQRES 19 A 323 LEU ARG ILE SER ASP ARG ILE GLU ARG GLY PRO GLY ARG SEQRES 20 A 323 HIS GLY VAL SER ASN ALA PHE TYR LEU TYR ILE LEU ASP SEQRES 21 A 323 PRO ASP GLY HIS ARG ILE GLU ILE TYR THR GLN ASP TYR SEQRES 22 A 323 TYR THR GLY ASP PRO ASP ASN PRO THR ILE THR TRP ASP SEQRES 23 A 323 VAL HIS ASP ASN GLN ARG ARG ASP TRP TRP GLY ASN PRO SEQRES 24 A 323 VAL VAL PRO SER TRP TYR THR GLU ALA SER LEU VAL LEU SEQRES 25 A 323 ASP LEU ASP GLY ASN PRO GLN PRO VAL ILE VAL SEQRES 1 B 323 MET THR ASN PHE VAL PRO THR PRO SER VAL PRO ALA PRO SEQRES 2 B 323 ASP ILE VAL ARG CYS ALA TYR MET GLU ILE VAL VAL THR SEQRES 3 B 323 ASP LEU ALA LYS SER ARG GLU PHE TYR VAL ASP VAL LEU SEQRES 4 B 323 GLY LEU HIS VAL THR GLU GLU ASP GLU ASN THR ILE TYR SEQRES 5 B 323 LEU ARG SER LEU GLU GLU PHE ILE HIS HIS ASN LEU VAL SEQRES 6 B 323 LEU ARG GLN GLY PRO ILE ALA ALA VAL ALA ALA PHE ALA SEQRES 7 B 323 TYR ARG VAL LYS SER PRO ALA GLU VAL ASP ALA ALA GLU SEQRES 8 B 323 ALA TYR TYR LYS GLU LEU GLY CYS ARG THR GLU ARG ARG SEQRES 9 B 323 LYS GLU GLY PHE THR LYS GLY ILE GLY ASP SER VAL ARG SEQRES 10 B 323 VAL GLU ASP PRO LEU GLY PHE PRO TYR GLU PHE PHE TYR SEQRES 11 B 323 GLU THR GLU HIS VAL GLU ARG LEU THR GLN ARG TYR ASP SEQRES 12 B 323 LEU TYR SER ALA GLY GLU LEU VAL ARG LEU ASP HIS PHE SEQRES 13 B 323 ASN GLN VAL THR PRO ASP VAL PRO ARG GLY ARG ALA TYR SEQRES 14 B 323 LEU GLU ASP LEU GLY PHE ARG VAL SER GLU ASP ILE LYS SEQRES 15 B 323 ASP SER ASP GLY VAL THR TYR ALA ALA TRP MET HIS ARG SEQRES 16 B 323 LYS GLN THR VAL HIS ASP THR ALA LEU THR GLY GLY ASN SEQRES 17 B 323 GLY PRO ARG MET HIS HIS VAL ALA PHE ALA THR HIS GLU SEQRES 18 B 323 LYS HIS ASN ILE ILE GLN ILE CYS ASP LYS MET GLY ALA SEQRES 19 B 323 LEU ARG ILE SER ASP ARG ILE GLU ARG GLY PRO GLY ARG SEQRES 20 B 323 HIS GLY VAL SER ASN ALA PHE TYR LEU TYR ILE LEU ASP SEQRES 21 B 323 PRO ASP GLY HIS ARG ILE GLU ILE TYR THR GLN ASP TYR SEQRES 22 B 323 TYR THR GLY ASP PRO ASP ASN PRO THR ILE THR TRP ASP SEQRES 23 B 323 VAL HIS ASP ASN GLN ARG ARG ASP TRP TRP GLY ASN PRO SEQRES 24 B 323 VAL VAL PRO SER TRP TYR THR GLU ALA SER LEU VAL LEU SEQRES 25 B 323 ASP LEU ASP GLY ASN PRO GLN PRO VAL ILE VAL HET MN A 500 1 HET MN B 500 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *662(H2 O) HELIX 1 1 ASP A 27 VAL A 36 1 10 HELIX 2 2 SER A 83 LEU A 97 1 15 HELIX 3 3 ARG A 141 TYR A 145 5 5 HELIX 4 4 ASP A 162 LEU A 173 1 12 HELIX 5 5 GLU A 221 LEU A 235 1 15 HELIX 6 6 ILE A 237 ASP A 239 5 3 HELIX 7 7 ASP A 289 ARG A 293 5 5 HELIX 8 8 VAL A 301 THR A 306 5 6 HELIX 9 9 ASP B 27 VAL B 36 1 10 HELIX 10 10 SER B 83 LEU B 97 1 15 HELIX 11 11 ARG B 141 TYR B 145 5 5 HELIX 12 12 ASP B 162 LEU B 173 1 12 HELIX 13 13 GLU B 221 LEU B 235 1 15 HELIX 14 14 ILE B 237 ASP B 239 5 3 HELIX 15 15 ASP B 289 ARG B 293 5 5 HELIX 16 16 VAL B 301 THR B 306 5 6 SHEET 1 A 8 HIS A 42 GLU A 46 0 SHEET 2 A 8 THR A 50 ARG A 54 -1 O TYR A 52 N THR A 44 SHEET 3 A 8 LEU A 64 GLN A 68 -1 O LEU A 64 N LEU A 53 SHEET 4 A 8 ILE A 15 VAL A 25 1 O MET A 21 N VAL A 65 SHEET 5 A 8 ALA A 73 VAL A 81 -1 O ALA A 73 N VAL A 24 SHEET 6 A 8 PRO A 125 PHE A 129 1 O PRO A 125 N PHE A 77 SHEET 7 A 8 SER A 115 GLU A 119 -1 O VAL A 116 N PHE A 128 SHEET 8 A 8 THR A 101 ARG A 104 -1 O GLU A 102 N ARG A 117 SHEET 1 B 9 ILE A 283 ASP A 286 0 SHEET 2 B 9 ARG A 176 LYS A 182 1 O SER A 178 N ILE A 283 SHEET 3 B 9 THR A 188 HIS A 194 -1 N TYR A 189 O ILE A 181 SHEET 4 B 9 THR A 202 GLY A 206 -1 O THR A 202 N MET A 193 SHEET 5 B 9 ARG A 152 THR A 160 1 O PHE A 156 N ALA A 203 SHEET 6 B 9 ARG A 211 ALA A 218 -1 O ARG A 211 N VAL A 159 SHEET 7 B 9 ARG A 265 THR A 270 1 O ARG A 265 N VAL A 215 SHEET 8 B 9 PHE A 254 LEU A 259 -1 N PHE A 254 O THR A 270 SHEET 9 B 9 ILE A 241 ARG A 247 -1 N GLU A 242 O TYR A 257 SHEET 1 C 7 ILE A 283 ASP A 286 0 SHEET 2 C 7 ARG A 176 LYS A 182 1 O SER A 178 N ILE A 283 SHEET 3 C 7 THR A 188 HIS A 194 -1 N TYR A 189 O ILE A 181 SHEET 4 C 7 THR A 202 GLY A 206 -1 O THR A 202 N MET A 193 SHEET 5 C 7 ARG A 152 THR A 160 1 O PHE A 156 N ALA A 203 SHEET 6 C 7 ARG A 211 ALA A 218 -1 O ARG A 211 N VAL A 159 SHEET 7 C 7 SER A 309 LEU A 310 -1 N SER A 309 O MET A 212 SHEET 1 D 8 HIS B 42 GLU B 46 0 SHEET 2 D 8 THR B 50 ARG B 54 -1 O TYR B 52 N THR B 44 SHEET 3 D 8 LEU B 64 GLN B 68 -1 O LEU B 64 N LEU B 53 SHEET 4 D 8 ILE B 15 VAL B 25 1 O MET B 21 N VAL B 65 SHEET 5 D 8 ALA B 73 VAL B 81 -1 O ALA B 73 N VAL B 24 SHEET 6 D 8 PRO B 125 PHE B 129 1 O PRO B 125 N PHE B 77 SHEET 7 D 8 SER B 115 GLU B 119 -1 O VAL B 116 N PHE B 128 SHEET 8 D 8 THR B 101 ARG B 104 -1 O GLU B 102 N ARG B 117 SHEET 1 E 9 ILE B 283 ASP B 286 0 SHEET 2 E 9 ARG B 176 LYS B 182 1 O SER B 178 N ILE B 283 SHEET 3 E 9 THR B 188 HIS B 194 -1 N TYR B 189 O ILE B 181 SHEET 4 E 9 THR B 202 GLY B 206 -1 O THR B 202 N MET B 193 SHEET 5 E 9 LEU B 150 THR B 160 1 O PHE B 156 N ALA B 203 SHEET 6 E 9 ARG B 211 THR B 219 -1 O ARG B 211 N VAL B 159 SHEET 7 E 9 ARG B 265 THR B 270 1 O ARG B 265 N VAL B 215 SHEET 8 E 9 PHE B 254 LEU B 259 -1 N PHE B 254 O THR B 270 SHEET 9 E 9 ILE B 241 ARG B 247 -1 N GLU B 242 O TYR B 257 SHEET 1 F 7 ILE B 283 ASP B 286 0 SHEET 2 F 7 ARG B 176 LYS B 182 1 O SER B 178 N ILE B 283 SHEET 3 F 7 THR B 188 HIS B 194 -1 N TYR B 189 O ILE B 181 SHEET 4 F 7 THR B 202 GLY B 206 -1 O THR B 202 N MET B 193 SHEET 5 F 7 LEU B 150 THR B 160 1 O PHE B 156 N ALA B 203 SHEET 6 F 7 ARG B 211 THR B 219 -1 O ARG B 211 N VAL B 159 SHEET 7 F 7 SER B 309 LEU B 310 -1 N SER B 309 O MET B 212 LINK NE2 HIS A 155 MN MN A 500 1555 1555 2.21 LINK NE2 HIS A 214 MN MN A 500 1555 1555 2.03 LINK OE1 GLU A 267 MN MN A 500 1555 1555 2.11 LINK MN MN A 500 O HOH A1271 1555 1555 2.38 LINK MN MN A 500 O HOH A1272 1555 1555 2.18 LINK NE2 HIS B 155 MN MN B 500 1555 1555 2.20 LINK NE2 HIS B 214 MN MN B 500 1555 1555 2.05 LINK OE1 GLU B 267 MN MN B 500 1555 1555 2.13 LINK MN MN B 500 O HOH B1273 1555 1555 2.38 LINK MN MN B 500 O HOH B1274 1555 1555 2.14 CISPEP 1 GLY A 209 PRO A 210 0 1.92 CISPEP 2 GLY A 244 PRO A 245 0 0.24 CISPEP 3 GLY B 209 PRO B 210 0 1.49 CISPEP 4 GLY B 244 PRO B 245 0 0.30 SITE 1 AC1 5 HIS A 155 HIS A 214 GLU A 267 HOH A1271 SITE 2 AC1 5 HOH A1272 SITE 1 AC2 5 HIS B 155 HIS B 214 GLU B 267 HOH B1273 SITE 2 AC2 5 HOH B1274 CRYST1 137.800 59.040 102.250 90.00 119.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007257 0.000000 0.004023 0.00000 SCALE2 0.000000 0.016938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011182 0.00000