HEADER REPLICATION 29-MAY-00 1F2U TITLE CRYSTAL STRUCTURE OF RAD50 ABC-ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAD50 ABC-ATPASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAD50 ABC-ATPASE; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: C-TERMINAL DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET29; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 10 ORGANISM_TAXID: 2261; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET29 KEYWDS DNA DOUBLE-STRAND BREAK REPAIR, ABC-ATPASE, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR K.P.HOPFNER,A.KARCHER,D.S.SHIN,L.CRAIG REVDAT 4 07-FEB-24 1F2U 1 REMARK LINK REVDAT 3 24-FEB-09 1F2U 1 VERSN REVDAT 2 01-APR-03 1F2U 1 JRNL REVDAT 1 02-AUG-00 1F2U 0 JRNL AUTH K.P.HOPFNER,A.KARCHER,D.S.SHIN,L.CRAIG,L.M.ARTHUR, JRNL AUTH 2 J.P.CARNEY,J.A.TAINER JRNL TITL STRUCTURAL BIOLOGY OF RAD50 ATPASE: ATP-DRIVEN JRNL TITL 2 CONFORMATIONAL CONTROL IN DNA DOUBLE-STRAND BREAK REPAIR AND JRNL TITL 3 THE ABC-ATPASE SUPERFAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 101 789 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 10892749 JRNL DOI 10.1016/S0092-8674(00)80890-9 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH&HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1169 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1000011175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 444072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 17% PEG 3350, 8.5% REMARK 280 ISOPROPANOL, 15% GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 735 REMARK 465 TYR B 736 REMARK 465 LYS B 737 REMARK 465 SER C 149 REMARK 465 LYS D 735 REMARK 465 TYR D 736 REMARK 465 LYS D 737 REMARK 465 ALA D 738 REMARK 465 LEU D 739 REMARK 465 ALA D 740 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA D 771 REMARK 475 GLU D 772 REMARK 475 GLU D 773 REMARK 475 ASN D 774 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 6 CG1 CG2 REMARK 480 ASN A 10 CB REMARK 480 ILE A 29 CG2 CD1 REMARK 480 ARG A 67 NE CZ NH1 NH2 REMARK 480 ILE A 97 CD1 REMARK 480 ALA A 99 CB REMARK 480 ALA A 135 CB REMARK 480 ALA B 743 CB REMARK 480 ALA B 744 CB REMARK 480 ALA B 757 CB REMARK 480 VAL B 781 CG1 CG2 REMARK 480 ARG B 834 CD NE CZ NH1 NH2 REMARK 480 ILE B 839 CD1 REMARK 480 LYS B 845 CG CD CE NZ REMARK 480 ARG C 102 NE CZ NH1 NH2 REMARK 480 ILE C 131 CD1 REMARK 480 VAL D 776 CG1 CG2 REMARK 480 ARG D 777 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 785 CB CG CD CE NZ REMARK 480 SER D 817 OG REMARK 480 ILE D 839 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 754 OH TYR D 843 2.11 REMARK 500 OE1 GLU C 20 O HOH C 939 2.12 REMARK 500 O GLY C 95 O HOH C 950 2.17 REMARK 500 OE2 GLU B 823 O HOH B 48 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 841 NH2 ARG C 52 4545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 12 -121.85 53.13 REMARK 500 ASP A 16 102.68 -163.43 REMARK 500 LYS A 22 -162.79 -116.13 REMARK 500 VAL A 64 -71.40 -36.50 REMARK 500 THR A 112 -177.92 177.42 REMARK 500 ILE A 127 101.96 -170.85 REMARK 500 GLU A 148 94.82 -68.42 REMARK 500 GLU B 773 78.17 59.54 REMARK 500 ASN B 774 6.81 54.74 REMARK 500 ALA B 813 -14.93 -48.73 REMARK 500 GLU B 823 79.99 60.09 REMARK 500 TYR B 827 -15.53 77.17 REMARK 500 GLU B 841 46.00 -93.93 REMARK 500 ARG B 842 -36.50 -138.59 REMARK 500 ALA B 862 21.42 -61.12 REMARK 500 ASN B 873 70.55 52.89 REMARK 500 VAL B 881 -115.92 -119.43 REMARK 500 GLU C 4 -63.39 -108.42 REMARK 500 ARG C 12 -125.30 49.43 REMARK 500 LYS C 77 116.10 -160.63 REMARK 500 ILE C 127 101.51 173.27 REMARK 500 SER D 746 36.76 -88.33 REMARK 500 LYS D 747 -36.19 -135.87 REMARK 500 GLU D 772 31.35 -144.31 REMARK 500 GLU D 773 107.27 63.56 REMARK 500 LYS D 775 110.80 -178.92 REMARK 500 GLU D 823 85.65 59.88 REMARK 500 TYR D 827 -11.47 71.88 REMARK 500 ASN D 873 58.23 76.93 REMARK 500 VAL D 881 -88.52 -114.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 37 OG REMARK 620 2 GLN A 140 OE1 78.4 REMARK 620 3 ATP A 901 O1B 93.5 159.0 REMARK 620 4 ATP A 901 O1G 168.7 97.6 86.6 REMARK 620 5 HOH A 914 O 79.6 79.4 80.1 89.3 REMARK 620 6 HOH B 48 O 103.2 98.8 101.9 87.7 176.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 37 OG REMARK 620 2 GLN C 140 OE1 81.2 REMARK 620 3 ATP C 901 O1B 95.1 168.1 REMARK 620 4 ATP C 901 O1G 174.4 100.5 82.1 REMARK 620 5 HOH C 919 O 90.5 83.2 85.5 84.4 REMARK 620 6 HOH D 50 O 96.5 95.3 96.3 88.7 172.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F2T RELATED DB: PDB REMARK 900 ATP FREE RAD50 DBREF 1F2U A 1 149 UNP P58301 RAD50_PYRFU 1 149 DBREF 1F2U B 735 882 UNP P58301 RAD50_PYRFU 735 882 DBREF 1F2U C 1 149 UNP P58301 RAD50_PYRFU 1 149 DBREF 1F2U D 735 882 UNP P58301 RAD50_PYRFU 735 882 SEQRES 1 A 149 MET LYS LEU GLU ARG VAL THR VAL LYS ASN PHE ARG SER SEQRES 2 A 149 HIS SER ASP THR VAL VAL GLU PHE LYS GLU GLY ILE ASN SEQRES 3 A 149 LEU ILE ILE GLY GLN ASN GLY SER GLY LYS SER SER LEU SEQRES 4 A 149 LEU ASP ALA ILE LEU VAL GLY LEU TYR TRP PRO LEU ARG SEQRES 5 A 149 ILE LYS ASP ILE LYS LYS ASP GLU PHE THR LYS VAL GLY SEQRES 6 A 149 ALA ARG ASP THR TYR ILE ASP LEU ILE PHE GLU LYS ASP SEQRES 7 A 149 GLY THR LYS TYR ARG ILE THR ARG ARG PHE LEU LYS GLY SEQRES 8 A 149 TYR SER SER GLY GLU ILE HIS ALA MET LYS ARG LEU VAL SEQRES 9 A 149 GLY ASN GLU TRP LYS HIS VAL THR GLU PRO SER SER LYS SEQRES 10 A 149 ALA ILE SER ALA PHE MET GLU LYS LEU ILE PRO TYR ASN SEQRES 11 A 149 ILE PHE LEU ASN ALA ILE TYR ILE ARG GLN GLY GLN ILE SEQRES 12 A 149 ASP ALA ILE LEU GLU SER SEQRES 1 B 148 LYS TYR LYS ALA LEU ALA ARG GLU ALA ALA LEU SER LYS SEQRES 2 B 148 ILE GLY GLU LEU ALA SER GLU ILE PHE ALA GLU PHE THR SEQRES 3 B 148 GLU GLY LYS TYR SER GLU VAL VAL VAL ARG ALA GLU GLU SEQRES 4 B 148 ASN LYS VAL ARG LEU PHE VAL VAL TRP GLU GLY LYS GLU SEQRES 5 B 148 ARG PRO LEU THR PHE LEU SER GLY GLY GLU ARG ILE ALA SEQRES 6 B 148 LEU GLY LEU ALA PHE ARG LEU ALA MET SER LEU TYR LEU SEQRES 7 B 148 ALA GLY GLU ILE SER LEU LEU ILE LEU ASP GLU PRO THR SEQRES 8 B 148 PRO TYR LEU ASP GLU GLU ARG ARG ARG LYS LEU ILE THR SEQRES 9 B 148 ILE MET GLU ARG TYR LEU LYS LYS ILE PRO GLN VAL ILE SEQRES 10 B 148 LEU VAL SER HIS ASP GLU GLU LEU LYS ASP ALA ALA ASP SEQRES 11 B 148 HIS VAL ILE ARG ILE SER LEU GLU ASN GLY SER SER LYS SEQRES 12 B 148 VAL GLU VAL VAL SER SEQRES 1 C 149 MET LYS LEU GLU ARG VAL THR VAL LYS ASN PHE ARG SER SEQRES 2 C 149 HIS SER ASP THR VAL VAL GLU PHE LYS GLU GLY ILE ASN SEQRES 3 C 149 LEU ILE ILE GLY GLN ASN GLY SER GLY LYS SER SER LEU SEQRES 4 C 149 LEU ASP ALA ILE LEU VAL GLY LEU TYR TRP PRO LEU ARG SEQRES 5 C 149 ILE LYS ASP ILE LYS LYS ASP GLU PHE THR LYS VAL GLY SEQRES 6 C 149 ALA ARG ASP THR TYR ILE ASP LEU ILE PHE GLU LYS ASP SEQRES 7 C 149 GLY THR LYS TYR ARG ILE THR ARG ARG PHE LEU LYS GLY SEQRES 8 C 149 TYR SER SER GLY GLU ILE HIS ALA MET LYS ARG LEU VAL SEQRES 9 C 149 GLY ASN GLU TRP LYS HIS VAL THR GLU PRO SER SER LYS SEQRES 10 C 149 ALA ILE SER ALA PHE MET GLU LYS LEU ILE PRO TYR ASN SEQRES 11 C 149 ILE PHE LEU ASN ALA ILE TYR ILE ARG GLN GLY GLN ILE SEQRES 12 C 149 ASP ALA ILE LEU GLU SER SEQRES 1 D 148 LYS TYR LYS ALA LEU ALA ARG GLU ALA ALA LEU SER LYS SEQRES 2 D 148 ILE GLY GLU LEU ALA SER GLU ILE PHE ALA GLU PHE THR SEQRES 3 D 148 GLU GLY LYS TYR SER GLU VAL VAL VAL ARG ALA GLU GLU SEQRES 4 D 148 ASN LYS VAL ARG LEU PHE VAL VAL TRP GLU GLY LYS GLU SEQRES 5 D 148 ARG PRO LEU THR PHE LEU SER GLY GLY GLU ARG ILE ALA SEQRES 6 D 148 LEU GLY LEU ALA PHE ARG LEU ALA MET SER LEU TYR LEU SEQRES 7 D 148 ALA GLY GLU ILE SER LEU LEU ILE LEU ASP GLU PRO THR SEQRES 8 D 148 PRO TYR LEU ASP GLU GLU ARG ARG ARG LYS LEU ILE THR SEQRES 9 D 148 ILE MET GLU ARG TYR LEU LYS LYS ILE PRO GLN VAL ILE SEQRES 10 D 148 LEU VAL SER HIS ASP GLU GLU LEU LYS ASP ALA ALA ASP SEQRES 11 D 148 HIS VAL ILE ARG ILE SER LEU GLU ASN GLY SER SER LYS SEQRES 12 D 148 VAL GLU VAL VAL SER HET MG A 902 1 HET ATP A 901 31 HET MG C 902 1 HET ATP C 901 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 5 MG 2(MG 2+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 9 HOH *373(H2 O) HELIX 1 1 GLY A 35 TRP A 49 1 15 HELIX 2 2 LYS A 57 THR A 62 1 6 HELIX 3 3 SER A 115 ILE A 127 1 13 HELIX 4 4 PRO A 128 ILE A 136 1 9 HELIX 5 5 ASP A 144 GLU A 148 5 5 HELIX 6 6 ALA B 738 THR B 760 1 23 HELIX 7 7 THR B 790 LEU B 792 5 3 HELIX 8 8 SER B 793 LEU B 812 1 20 HELIX 9 9 ASP B 829 LEU B 844 1 16 HELIX 10 10 LYS B 845 ILE B 847 5 3 HELIX 11 11 ASP B 856 ASP B 861 5 6 HELIX 12 12 GLY C 35 TRP C 49 1 15 HELIX 13 13 LYS C 57 THR C 62 1 6 HELIX 14 14 TYR C 92 GLU C 96 5 5 HELIX 15 15 SER C 115 ILE C 127 1 13 HELIX 16 16 PRO C 128 ILE C 136 1 9 HELIX 17 17 ARG D 741 THR D 760 1 20 HELIX 18 18 THR D 790 LEU D 792 5 3 HELIX 19 19 SER D 793 LEU D 812 1 20 HELIX 20 20 ASP D 829 TYR D 843 1 15 HELIX 21 21 LEU D 844 ILE D 847 5 4 HELIX 22 22 ASP D 856 ALA D 863 5 8 SHEET 1 A 6 HIS A 14 GLU A 20 0 SHEET 2 A 6 LYS A 2 PHE A 11 -1 O VAL A 6 N VAL A 19 SHEET 3 A 6 ASP A 68 LYS A 77 -1 O TYR A 70 N LYS A 9 SHEET 4 A 6 THR A 80 LEU A 89 -1 O THR A 80 N LYS A 77 SHEET 5 A 6 ILE A 97 VAL A 104 -1 O ILE A 97 N ARG A 87 SHEET 6 A 6 GLU A 107 HIS A 110 -1 O GLU A 107 N VAL A 104 SHEET 1 B 6 TYR A 137 ILE A 138 0 SHEET 2 B 6 LEU B 818 ASP B 822 1 O ILE B 820 N ILE A 138 SHEET 3 B 6 GLN B 849 SER B 854 1 O GLN B 849 N LEU B 819 SHEET 4 B 6 GLY A 24 GLY A 30 1 O GLY A 24 N VAL B 850 SHEET 5 B 6 HIS B 865 GLU B 872 1 O HIS B 865 N LEU A 27 SHEET 6 B 6 SER B 875 VAL B 880 -1 O SER B 875 N GLU B 872 SHEET 1 C 3 GLU B 766 ALA B 771 0 SHEET 2 C 3 VAL B 776 TRP B 782 -1 O ARG B 777 N ARG B 770 SHEET 3 C 3 LYS B 785 PRO B 788 -1 O LYS B 785 N TRP B 782 SHEET 1 D 6 HIS C 14 GLU C 20 0 SHEET 2 D 6 LYS C 2 PHE C 11 -1 N VAL C 6 O VAL C 19 SHEET 3 D 6 ASP C 68 LYS C 77 -1 O TYR C 70 N LYS C 9 SHEET 4 D 6 THR C 80 LEU C 89 -1 O THR C 80 N LYS C 77 SHEET 5 D 6 ILE C 97 VAL C 104 -1 O ILE C 97 N ARG C 87 SHEET 6 D 6 GLU C 107 HIS C 110 -1 N GLU C 107 O VAL C 104 SHEET 1 E 6 TYR C 137 ILE C 138 0 SHEET 2 E 6 LEU D 818 ASP D 822 1 O ILE D 820 N ILE C 138 SHEET 3 E 6 GLN D 849 SER D 854 1 O GLN D 849 N LEU D 819 SHEET 4 E 6 GLY C 24 ILE C 29 1 O GLY C 24 N VAL D 850 SHEET 5 E 6 HIS D 865 LEU D 871 1 O HIS D 865 N LEU C 27 SHEET 6 E 6 SER D 876 VAL D 880 -1 N LYS D 877 O SER D 870 SHEET 1 F 3 GLU D 766 ARG D 770 0 SHEET 2 F 3 ARG D 777 TRP D 782 -1 O ARG D 777 N ARG D 770 SHEET 3 F 3 LYS D 785 PRO D 788 -1 O LYS D 785 N TRP D 782 LINK OG SER A 37 MG MG A 902 1555 1555 2.03 LINK OE1 GLN A 140 MG MG A 902 1555 1555 2.13 LINK O1B ATP A 901 MG MG A 902 1555 1555 2.01 LINK O1G ATP A 901 MG MG A 902 1555 1555 2.06 LINK MG MG A 902 O HOH A 914 1555 1555 2.04 LINK MG MG A 902 O HOH B 48 1555 1555 2.10 LINK OG SER C 37 MG MG C 902 1555 1555 1.96 LINK OE1 GLN C 140 MG MG C 902 1555 1555 2.07 LINK O1B ATP C 901 MG MG C 902 1555 1555 2.01 LINK O1G ATP C 901 MG MG C 902 1555 1555 2.15 LINK MG MG C 902 O HOH C 919 1555 1555 2.11 LINK MG MG C 902 O HOH D 50 1555 1555 2.04 CISPEP 1 TRP A 49 PRO A 50 0 0.16 CISPEP 2 TRP C 49 PRO C 50 0 1.45 SITE 1 AC1 5 SER A 37 GLN A 140 ATP A 901 HOH A 914 SITE 2 AC1 5 HOH B 48 SITE 1 AC2 5 SER C 37 GLN C 140 ATP C 901 HOH C 919 SITE 2 AC2 5 HOH D 50 SITE 1 AC3 30 ARG A 12 GLN A 31 ASN A 32 GLY A 33 SITE 2 AC3 30 SER A 34 GLY A 35 LYS A 36 SER A 37 SITE 3 AC3 30 SER A 38 GLU A 60 THR A 62 LYS A 63 SITE 4 AC3 30 VAL A 64 GLN A 140 MG A 902 HOH A 907 SITE 5 AC3 30 HOH A 908 HOH A 914 HOH A 947 HOH B 48 SITE 6 AC3 30 HOH B 260 GLU B 823 HOH D 162 LYS D 763 SITE 7 AC3 30 TYR D 764 PHE D 791 SER D 793 GLY D 794 SITE 8 AC3 30 GLY D 795 GLU D 796 SITE 1 AC4 32 HOH B 12 HOH B 283 LYS B 763 TYR B 764 SITE 2 AC4 32 PHE B 791 SER B 793 GLY B 794 GLY B 795 SITE 3 AC4 32 GLU B 796 ARG C 12 SER C 13 GLN C 31 SITE 4 AC4 32 ASN C 32 GLY C 33 SER C 34 GLY C 35 SITE 5 AC4 32 LYS C 36 SER C 37 SER C 38 GLU C 60 SITE 6 AC4 32 THR C 62 LYS C 63 VAL C 64 GLN C 140 SITE 7 AC4 32 MG C 902 HOH C 903 HOH C 908 HOH C 919 SITE 8 AC4 32 HOH C 929 HOH C 933 HOH D 50 GLU D 823 CRYST1 79.900 82.600 106.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009434 0.00000