HEADER IMMUNE SYSTEM 04-JUN-00 1F3J TITLE HISTOCOMPATIBILITY ANTIGEN I-AG7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: A-D ALPHA CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MHC CLASS II NOD; COMPND 8 CHAIN: B, E; COMPND 9 FRAGMENT: BETA CHAIN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: LYSOZYME C; COMPND 13 CHAIN: P, Q; COMPND 14 FRAGMENT: RESIDUES 11-24, CORRESPOND TO BINDING SITES P-3 TO P11; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 19 ORGANISM_COMMON: CHICKEN; SOURCE 20 ORGANISM_TAXID: 9031; SOURCE 21 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 22 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 24 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS KEYWDS HISTOCOMPATIBILITY ANTIGEN, MHC, PEPTIDE COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.R.LATEK,E.R.UNANUE,D.H.FREMONT REVDAT 8 09-AUG-23 1F3J 1 HETSYN REVDAT 7 29-JUL-20 1F3J 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 04-OCT-17 1F3J 1 REMARK REVDAT 5 16-NOV-11 1F3J 1 HETATM REVDAT 4 13-JUL-11 1F3J 1 VERSN REVDAT 3 24-FEB-09 1F3J 1 VERSN REVDAT 2 01-APR-03 1F3J 1 JRNL REVDAT 1 20-SEP-00 1F3J 0 JRNL AUTH R.R.LATEK,A.SURI,S.J.PETZOLD,C.A.NELSON,O.KANAGAWA, JRNL AUTH 2 E.R.UNANUE,D.H.FREMONT JRNL TITL STRUCTURAL BASIS OF PEPTIDE BINDING AND PRESENTATION BY THE JRNL TITL 2 TYPE I DIABETES-ASSOCIATED MHC CLASS II MOLECULE OF NOD JRNL TITL 3 MICE. JRNL REF IMMUNITY V. 12 699 2000 JRNL REFN ISSN 1074-7613 JRNL PMID 10894169 JRNL DOI 10.1016/S1074-7613(00)80220-4 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 285984.270 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.2 REMARK 3 NUMBER OF REFLECTIONS : 16107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2143 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 112 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.07000 REMARK 3 B22 (A**2) : 4.07000 REMARK 3 B33 (A**2) : -8.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.90 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.510 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.460 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, CCP4 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18859 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.18000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.77000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.09000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.77000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.27000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.77000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.77000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.09000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.77000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.77000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 132.27000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, D, E, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D1005 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS ENTRY CONTAINS COORDINATES FOR THE EXTRACELLULAR REMARK 400 DOMAINS OF THE MURINE MHC CLASS II MOLECULE I-AG7 WITH REMARK 400 PEPTIDE FROM HEN EGG WHITE LYSOZYME (11 - 24). REMARK 400 THE COMPLEX WAS PRODUCED AS A CHIMERIC MOLECULE REMARK 400 WITH THE PEPTIDE COVALENTLY ATTACHED TO THE I-AK REMARK 400 BETA CHAIN VIA A POLYPEPTIDE LINKER. REMARK 400 MODIFIED LEUCINE ZIPPER TAILS WERE ATTACHED REMARK 400 TO THE ALPHA AND BETA CHAIN TERMINI. REMARK 400 THROMBIN TREATMENT RELEASED THE ZIPPER TAILS REMARK 400 AND CUT THE PEPTIDE LINKER. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG D 123 NH2 ARG D 123 8555 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY D 131 N - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 105.29 -46.22 REMARK 500 ASP A 37 -81.50 -86.14 REMARK 500 LYS A 38 -0.66 -53.41 REMARK 500 LYS A 39 61.39 37.64 REMARK 500 GLU A 47 -6.73 -37.13 REMARK 500 PHE A 48 -106.58 -74.76 REMARK 500 LEU A 51 -66.11 168.36 REMARK 500 HIS A 68 -75.08 -57.91 REMARK 500 PRO A 96 157.26 -48.76 REMARK 500 ASN A 103 171.80 178.16 REMARK 500 PHE A 113 131.28 148.49 REMARK 500 PRO A 115 54.69 -57.95 REMARK 500 ASN A 124 58.06 39.35 REMARK 500 SER A 125 14.82 51.44 REMARK 500 ASP A 130 144.23 87.79 REMARK 500 ASP A 142 42.32 -82.83 REMARK 500 SER A 144 -168.26 -103.47 REMARK 500 PHE A 153 -160.09 -161.11 REMARK 500 ASP A 158 -75.86 -84.04 REMARK 500 ASP A 159 142.66 -7.12 REMARK 500 PRO A 173 145.58 -35.42 REMARK 500 ASN B 19 70.99 56.18 REMARK 500 GLN B 22 38.11 -80.00 REMARK 500 ARG B 23 94.82 164.99 REMARK 500 ASN B 33 -109.12 59.58 REMARK 500 VAL B 44 -73.43 -65.93 REMARK 500 THR B 51 -153.56 -129.81 REMARK 500 LEU B 53 -24.45 -37.15 REMARK 500 LEU B 68 -64.70 -23.95 REMARK 500 GLU B 69 -76.76 -48.32 REMARK 500 CYS B 79 -77.09 -63.67 REMARK 500 HIS B 81 -75.01 -50.12 REMARK 500 THR B 89 -99.04 -124.50 REMARK 500 THR B 106 117.39 -15.86 REMARK 500 GLU B 107 163.87 41.31 REMARK 500 ASN B 110 23.48 140.38 REMARK 500 TYR B 123 138.58 175.43 REMARK 500 PRO B 124 -154.36 -64.16 REMARK 500 LEU B 147 129.77 -22.54 REMARK 500 VAL B 157 139.99 174.77 REMARK 500 HIS B 166 -133.61 -114.11 REMARK 500 ALA B 190 46.75 -78.93 REMARK 500 THR D 10 107.11 -49.58 REMARK 500 ASP D 27 45.02 39.20 REMARK 500 ASP D 37 -84.75 -82.42 REMARK 500 LYS D 38 -0.92 -53.60 REMARK 500 GLU D 47 -11.15 -43.68 REMARK 500 PHE D 48 -106.26 -68.36 REMARK 500 LEU D 51 -66.71 170.97 REMARK 500 HIS D 68 -76.15 -57.06 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1F3J A 1 181 UNP P04228 HA2D_MOUSE 27 208 DBREF 1F3J B 4 191 UNP Q31135 Q31135_MOUSE 31 217 DBREF 1F3J P 11 24 UNP P00698 LYSC_CHICK 29 42 DBREF 1F3J D 1 181 UNP P04228 HA2D_MOUSE 27 208 DBREF 1F3J E 4 191 UNP Q31135 Q31135_MOUSE 31 217 DBREF 1F3J Q 11 24 UNP P00698 LYSC_CHICK 29 42 SEQRES 1 A 182 ILE GLU ALA ASP HIS VAL GLY PHE TYR GLY THR THR VAL SEQRES 2 A 182 TYR GLN SER PRO GLY ASP ILE GLY GLN TYR THR HIS GLU SEQRES 3 A 182 PHE ASP GLY ASP GLU LEU PHE TYR VAL ASP LEU ASP LYS SEQRES 4 A 182 LYS LYS THR VAL TRP ARG LEU PRO GLU PHE GLY GLN LEU SEQRES 5 A 182 ILE LEU PHE GLU PRO GLN GLY GLY LEU GLN ASN ILE ALA SEQRES 6 A 182 ALA GLU LYS HIS ASN LEU GLY ILE LEU THR LYS ARG SER SEQRES 7 A 182 ASN PHE THR PRO ALA THR ASN GLU ALA PRO GLN ALA THR SEQRES 8 A 182 VAL PHE PRO LYS SER PRO VAL LEU LEU GLY GLN PRO ASN SEQRES 9 A 182 THR LEU ILE CYS PHE VAL ASP ASN ILE PHE PRO PRO VAL SEQRES 10 A 182 ILE ASN ILE THR TRP LEU ARG ASN SER LYS SER VAL THR SEQRES 11 A 182 ASP GLY VAL TYR GLU THR SER PHE LEU VAL ASN ARG ASP SEQRES 12 A 182 HIS SER PHE HIS LYS LEU SER TYR LEU THR PHE ILE PRO SEQRES 13 A 182 SER ASP ASP ASP ILE TYR ASP CYS LYS VAL GLU HIS TRP SEQRES 14 A 182 GLY LEU GLU GLU PRO VAL LEU LYS HIS TRP GLU PRO GLU SEQRES 1 B 187 GLU ARG HIS PHE VAL HIS GLN PHE LYS GLY GLU CYS TYR SEQRES 2 B 187 PHE THR ASN GLY THR GLN ARG ILE ARG LEU VAL THR ARG SEQRES 3 B 187 TYR ILE TYR ASN ARG GLU GLU TYR LEU ARG PHE ASP SER SEQRES 4 B 187 ASP VAL GLY GLU TYR ARG ALA VAL THR GLU LEU GLY ARG SEQRES 5 B 187 HIS SER ALA GLU TYR TYR ASN LYS GLN TYR LEU GLU ARG SEQRES 6 B 187 THR ARG ALA GLU LEU ASP THR ALA CYS ARG HIS ASN TYR SEQRES 7 B 187 GLU GLU THR GLU VAL PRO THR SER LEU ARG ARG LEU GLU SEQRES 8 B 187 GLN PRO ASN VAL ALA ILE SER LEU SER ARG THR GLU ALA SEQRES 9 B 187 LEU ASN HIS HIS ASN THR LEU VAL CYS SER VAL THR ASP SEQRES 10 B 187 PHE TYR PRO ALA LYS ILE LYS VAL ARG TRP PHE ARG ASN SEQRES 11 B 187 GLY GLN GLU GLU THR VAL GLY VAL SER SER THR GLN LEU SEQRES 12 B 187 ILE ARG ASN GLY ASP TRP THR PHE GLN VAL LEU VAL MET SEQRES 13 B 187 LEU GLU MET THR PRO HIS GLN GLY GLU VAL TYR THR CYS SEQRES 14 B 187 HIS VAL GLU HIS PRO SER LEU LYS SER PRO ILE THR VAL SEQRES 15 B 187 GLU TRP ARG ALA GLN SEQRES 1 P 14 ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SEQRES 2 P 14 SER SEQRES 1 D 182 ILE GLU ALA ASP HIS VAL GLY PHE TYR GLY THR THR VAL SEQRES 2 D 182 TYR GLN SER PRO GLY ASP ILE GLY GLN TYR THR HIS GLU SEQRES 3 D 182 PHE ASP GLY ASP GLU LEU PHE TYR VAL ASP LEU ASP LYS SEQRES 4 D 182 LYS LYS THR VAL TRP ARG LEU PRO GLU PHE GLY GLN LEU SEQRES 5 D 182 ILE LEU PHE GLU PRO GLN GLY GLY LEU GLN ASN ILE ALA SEQRES 6 D 182 ALA GLU LYS HIS ASN LEU GLY ILE LEU THR LYS ARG SER SEQRES 7 D 182 ASN PHE THR PRO ALA THR ASN GLU ALA PRO GLN ALA THR SEQRES 8 D 182 VAL PHE PRO LYS SER PRO VAL LEU LEU GLY GLN PRO ASN SEQRES 9 D 182 THR LEU ILE CYS PHE VAL ASP ASN ILE PHE PRO PRO VAL SEQRES 10 D 182 ILE ASN ILE THR TRP LEU ARG ASN SER LYS SER VAL THR SEQRES 11 D 182 ASP GLY VAL TYR GLU THR SER PHE LEU VAL ASN ARG ASP SEQRES 12 D 182 HIS SER PHE HIS LYS LEU SER TYR LEU THR PHE ILE PRO SEQRES 13 D 182 SER ASP ASP ASP ILE TYR ASP CYS LYS VAL GLU HIS TRP SEQRES 14 D 182 GLY LEU GLU GLU PRO VAL LEU LYS HIS TRP GLU PRO GLU SEQRES 1 E 187 GLU ARG HIS PHE VAL HIS GLN PHE LYS GLY GLU CYS TYR SEQRES 2 E 187 PHE THR ASN GLY THR GLN ARG ILE ARG LEU VAL THR ARG SEQRES 3 E 187 TYR ILE TYR ASN ARG GLU GLU TYR LEU ARG PHE ASP SER SEQRES 4 E 187 ASP VAL GLY GLU TYR ARG ALA VAL THR GLU LEU GLY ARG SEQRES 5 E 187 HIS SER ALA GLU TYR TYR ASN LYS GLN TYR LEU GLU ARG SEQRES 6 E 187 THR ARG ALA GLU LEU ASP THR ALA CYS ARG HIS ASN TYR SEQRES 7 E 187 GLU GLU THR GLU VAL PRO THR SER LEU ARG ARG LEU GLU SEQRES 8 E 187 GLN PRO ASN VAL ALA ILE SER LEU SER ARG THR GLU ALA SEQRES 9 E 187 LEU ASN HIS HIS ASN THR LEU VAL CYS SER VAL THR ASP SEQRES 10 E 187 PHE TYR PRO ALA LYS ILE LYS VAL ARG TRP PHE ARG ASN SEQRES 11 E 187 GLY GLN GLU GLU THR VAL GLY VAL SER SER THR GLN LEU SEQRES 12 E 187 ILE ARG ASN GLY ASP TRP THR PHE GLN VAL LEU VAL MET SEQRES 13 E 187 LEU GLU MET THR PRO HIS GLN GLY GLU VAL TYR THR CYS SEQRES 14 E 187 HIS VAL GLU HIS PRO SER LEU LYS SER PRO ILE THR VAL SEQRES 15 E 187 GLU TRP ARG ALA GLN SEQRES 1 Q 14 ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SEQRES 2 Q 14 SER MODRES 1F3J ASN D 78 ASN GLYCOSYLATION SITE MODRES 1F3J ASN D 118 ASN GLYCOSYLATION SITE MODRES 1F3J ASN B 19 ASN GLYCOSYLATION SITE MODRES 1F3J ASN A 78 ASN GLYCOSYLATION SITE MODRES 1F3J ASN A 118 ASN GLYCOSYLATION SITE MODRES 1F3J ASN E 19 ASN GLYCOSYLATION SITE HET NAG A1001 14 HET NAG A1002 14 HET NAG B1003 14 HET NAG D1001 14 HET NAG D1002 14 HET NAG E1003 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 7 NAG 6(C8 H15 N O6) FORMUL 13 HOH *72(H2 O) HELIX 1 1 PRO A 56 SER A 77 1 22 HELIX 2 2 GLY B 54 TYR B 67 1 12 HELIX 3 3 TYR B 67 ALA B 78 1 12 HELIX 4 4 ALA B 78 GLU B 86 1 10 HELIX 5 5 PRO D 56 SER D 77 1 22 HELIX 6 6 GLY E 54 TYR E 67 1 12 HELIX 7 7 TYR E 67 ALA E 78 1 12 HELIX 8 8 ALA E 78 THR E 85 1 9 HELIX 9 9 THR E 89 ARG E 93 5 5 SHEET 1 A 8 LYS A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N TYR A 33 O VAL A 42 SHEET 3 A 8 ILE A 19 PHE A 26 -1 O TYR A 22 N VAL A 34 SHEET 4 A 8 HIS A 5 SER A 15 -1 N PHE A 8 O GLU A 25 SHEET 5 A 8 PHE B 7 PHE B 17 -1 O PHE B 7 N SER A 15 SHEET 6 A 8 ILE B 24 TYR B 32 -1 O ARG B 25 N TYR B 16 SHEET 7 A 8 GLU B 35 ASP B 41 -1 N GLU B 35 O TYR B 32 SHEET 8 A 8 TYR B 47 ALA B 49 -1 N ARG B 48 O ARG B 39 SHEET 1 B 4 GLN A 88 PRO A 93 0 SHEET 2 B 4 ASN A 103 ILE A 112 -1 O ILE A 106 N PHE A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O PHE A 145 N ILE A 112 SHEET 4 B 4 LEU A 138 VAL A 139 -1 N LEU A 138 O HIS A 146 SHEET 1 B10 2 VAL A 132 GLU A 134 0 SHEET 2 B10 2 PHE A 145 PHE A 153 -1 N TYR A 150 O TYR A 133 SHEET 1 C 4 LYS A 126 SER A 127 0 SHEET 2 C 4 ASN A 118 ARG A 123 -1 O ARG A 123 N LYS A 126 SHEET 3 C 4 TYR A 161 GLU A 166 -1 N ASP A 162 O LEU A 122 SHEET 4 C 4 VAL A 174 TRP A 178 -1 O VAL A 174 N VAL A 165 SHEET 1 D 8 ILE B 101 LEU B 103 0 SHEET 2 D 8 ASN B 113 PHE B 122 -1 N VAL B 116 O SER B 102 SHEET 3 D 8 PHE B 155 MET B 163 -1 N PHE B 155 O PHE B 122 SHEET 4 D 8 VAL B 142 THR B 145 -1 O SER B 143 N MET B 160 SHEET 5 D 8 VAL E 142 THR E 145 -1 N SER E 144 O SER B 144 SHEET 6 D 8 PHE E 155 MET E 163 -1 O LEU E 158 N THR E 145 SHEET 7 D 8 ASN E 113 PHE E 122 -1 O ASN E 113 N MET E 163 SHEET 8 D 8 ASN E 98 LEU E 103 -1 O ASN E 98 N THR E 120 SHEET 1 D10 2 ILE B 148 ARG B 149 0 SHEET 2 D10 2 PHE B 155 MET B 163 -1 N GLN B 156 O ILE B 148 SHEET 1 D20 2 ILE E 148 ARG E 149 0 SHEET 2 D20 2 PHE E 155 MET E 163 -1 N GLN E 156 O ILE E 148 SHEET 1 E 4 GLN B 136 GLU B 137 0 SHEET 2 E 4 LYS B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 E 4 VAL B 170 GLU B 176 -1 N THR B 172 O PHE B 132 SHEET 4 E 4 ILE B 184 ARG B 189 -1 O ILE B 184 N VAL B 175 SHEET 1 F 8 LYS D 40 TRP D 43 0 SHEET 2 F 8 ASP D 29 ASP D 35 -1 N TYR D 33 O VAL D 42 SHEET 3 F 8 ILE D 19 PHE D 26 -1 O TYR D 22 N VAL D 34 SHEET 4 F 8 HIS D 5 SER D 15 -1 N PHE D 8 O GLU D 25 SHEET 5 F 8 PHE E 7 PHE E 17 -1 N PHE E 7 O SER D 15 SHEET 6 F 8 ILE E 24 TYR E 32 -1 O ARG E 25 N TYR E 16 SHEET 7 F 8 GLU E 35 ASP E 41 -1 O GLU E 35 N TYR E 32 SHEET 8 F 8 TYR E 47 ALA E 49 -1 O ARG E 48 N ARG E 39 SHEET 1 G 4 GLN D 88 PRO D 93 0 SHEET 2 G 4 ASN D 103 ILE D 112 -1 N ILE D 106 O PHE D 92 SHEET 3 G 4 PHE D 145 PHE D 153 -1 O PHE D 145 N ILE D 112 SHEET 4 G 4 VAL D 132 GLU D 134 -1 O TYR D 133 N TYR D 150 SHEET 1 G10 2 LEU D 138 VAL D 139 0 SHEET 2 G10 2 PHE D 145 PHE D 153 -1 O HIS D 146 N LEU D 138 SHEET 1 H 4 LYS D 126 VAL D 128 0 SHEET 2 H 4 ASN D 118 ARG D 123 -1 O TRP D 121 N VAL D 128 SHEET 3 H 4 TYR D 161 GLU D 166 -1 N ASP D 162 O LEU D 122 SHEET 4 H 4 VAL D 174 TRP D 178 -1 O VAL D 174 N VAL D 165 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.04 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.02 SSBOND 4 CYS D 107 CYS D 163 1555 1555 2.03 SSBOND 5 CYS E 15 CYS E 79 1555 1555 2.04 SSBOND 6 CYS E 117 CYS E 173 1555 1555 2.02 LINK ND2 ASN A 78 C1 NAG A1001 1555 1555 1.46 LINK ND2 ASN A 118 C1 NAG A1002 1555 1555 1.46 LINK ND2 ASN B 19 C1 NAG B1003 1555 1555 1.46 LINK ND2 ASN D 78 C1 NAG D1001 1555 1555 1.45 LINK ND2 ASN D 118 C1 NAG D1002 1555 1555 1.45 LINK ND2 ASN E 19 C1 NAG E1003 1555 1555 1.46 CISPEP 1 SER A 15 PRO A 16 0 1.67 CISPEP 2 PHE A 113 PRO A 114 0 -0.03 CISPEP 3 TYR B 123 PRO B 124 0 -0.29 CISPEP 4 SER D 15 PRO D 16 0 0.37 CISPEP 5 PHE D 113 PRO D 114 0 0.29 CISPEP 6 TYR E 123 PRO E 124 0 -0.91 CRYST1 109.540 109.540 176.360 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005670 0.00000