HEADER CELL CYCLE 07-JUN-00 1F46 TITLE THE BACTERIAL CELL-DIVISION PROTEIN ZIPA AND ITS INTERACTION WITH AN TITLE 2 FTSZ FRAGMENT REVEALED BY X-RAY CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN ZIPA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL DIVISION PROTEIN ZIPA, CELL DIVISION, TRANSMEMBRANE, INNER KEYWDS 2 MEMBRANE, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR L.MOSYAK,Y.ZHANG,E.GLASFELD,M.STAHL,W.S.SOMERS REVDAT 3 07-FEB-24 1F46 1 REMARK REVDAT 2 24-FEB-09 1F46 1 VERSN REVDAT 1 13-JUN-01 1F46 0 JRNL AUTH L.MOSYAK,Y.ZHANG,E.GLASFELD,S.HANEY,M.STAHL,J.SEEHRA, JRNL AUTH 2 W.S.SOMERS JRNL TITL THE BACTERIAL CELL-DIVISION PROTEIN ZIPA AND ITS INTERACTION JRNL TITL 2 WITH AN FTSZ FRAGMENT REVEALED BY X-RAY CRYSTALLOGRAPHY. JRNL REF EMBO J. V. 19 3179 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 10880432 JRNL DOI 10.1093/EMBOJ/19.13.3179 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 46702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2335 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.340 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.810 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.04200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.87000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 90 O HOH B 307 2.10 REMARK 500 O HOH A 360 O HOH A 362 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 90 -96.90 -126.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 1F46 A 5 144 UNP P77173 ZIPA_ECOLI 189 328 DBREF 1F46 B 5 144 UNP P77173 ZIPA_ECOLI 189 328 SEQRES 1 A 140 LYS ARG LYS GLU ALA VAL ILE ILE MET ASN VAL ALA ALA SEQRES 2 A 140 HIS HIS GLY SER GLU LEU ASN GLY GLU LEU LEU LEU ASN SEQRES 3 A 140 SER ILE GLN GLN ALA GLY PHE ILE PHE GLY ASP MET ASN SEQRES 4 A 140 ILE TYR HIS ARG HIS LEU SER PRO ASP GLY SER GLY PRO SEQRES 5 A 140 ALA LEU PHE SER LEU ALA ASN MET VAL LYS PRO GLY THR SEQRES 6 A 140 PHE ASP PRO GLU MET LYS ASP PHE THR THR PRO GLY VAL SEQRES 7 A 140 THR ILE PHE MET GLN VAL PRO SER TYR GLY ASP GLU LEU SEQRES 8 A 140 GLN LEU PHE LYS LEU MET LEU GLN SER ALA GLN HIS ILE SEQRES 9 A 140 ALA ASP GLU VAL GLY GLY VAL VAL LEU ASP ASP GLN ARG SEQRES 10 A 140 ARG MET MET THR PRO GLN LYS LEU ARG GLU TYR GLN ASP SEQRES 11 A 140 ILE ILE ARG GLU VAL LYS ASP ALA ASN ALA SEQRES 1 B 140 LYS ARG LYS GLU ALA VAL ILE ILE MET ASN VAL ALA ALA SEQRES 2 B 140 HIS HIS GLY SER GLU LEU ASN GLY GLU LEU LEU LEU ASN SEQRES 3 B 140 SER ILE GLN GLN ALA GLY PHE ILE PHE GLY ASP MET ASN SEQRES 4 B 140 ILE TYR HIS ARG HIS LEU SER PRO ASP GLY SER GLY PRO SEQRES 5 B 140 ALA LEU PHE SER LEU ALA ASN MET VAL LYS PRO GLY THR SEQRES 6 B 140 PHE ASP PRO GLU MET LYS ASP PHE THR THR PRO GLY VAL SEQRES 7 B 140 THR ILE PHE MET GLN VAL PRO SER TYR GLY ASP GLU LEU SEQRES 8 B 140 GLN LEU PHE LYS LEU MET LEU GLN SER ALA GLN HIS ILE SEQRES 9 B 140 ALA ASP GLU VAL GLY GLY VAL VAL LEU ASP ASP GLN ARG SEQRES 10 B 140 ARG MET MET THR PRO GLN LYS LEU ARG GLU TYR GLN ASP SEQRES 11 B 140 ILE ILE ARG GLU VAL LYS ASP ALA ASN ALA FORMUL 3 HOH *422(H2 O) HELIX 1 1 GLY A 25 ALA A 35 1 11 HELIX 2 2 ASP A 41 ASN A 43 5 3 HELIX 3 3 ASP A 93 GLY A 113 1 21 HELIX 4 4 THR A 125 ASN A 143 1 19 HELIX 5 5 GLY B 25 ALA B 35 1 11 HELIX 6 6 ASP B 41 ASN B 43 5 3 HELIX 7 7 ASP B 93 GLY B 113 1 21 HELIX 8 8 THR B 125 ASN B 143 1 19 SHEET 1 A 6 PHE A 37 PHE A 39 0 SHEET 2 A 6 TYR A 45 HIS A 48 -1 O HIS A 46 N ILE A 38 SHEET 3 A 6 ALA A 57 ASN A 63 -1 N LEU A 58 O ARG A 47 SHEET 4 A 6 GLY A 81 VAL A 88 -1 O THR A 83 N ALA A 62 SHEET 5 A 6 ALA A 9 ALA A 16 -1 O ALA A 9 N VAL A 88 SHEET 6 A 6 VAL A 115 LEU A 117 -1 O VAL A 115 N ALA A 16 SHEET 1 B 2 LEU A 23 ASN A 24 0 SHEET 2 B 2 THR A 78 THR A 79 -1 O THR A 79 N LEU A 23 SHEET 1 C 6 PHE B 37 GLY B 40 0 SHEET 2 C 6 ILE B 44 ARG B 47 -1 O ILE B 44 N GLY B 40 SHEET 3 C 6 PHE B 59 ASN B 63 -1 O PHE B 59 N ARG B 47 SHEET 4 C 6 GLY B 81 VAL B 88 -1 N THR B 83 O ALA B 62 SHEET 5 C 6 ALA B 9 ALA B 16 -1 O ALA B 9 N VAL B 88 SHEET 6 C 6 VAL B 115 LEU B 117 -1 O VAL B 115 N ALA B 16 SHEET 1 D 2 LEU B 23 ASN B 24 0 SHEET 2 D 2 THR B 78 THR B 79 -1 O THR B 79 N LEU B 23 CISPEP 1 LYS A 66 PRO A 67 0 0.06 CISPEP 2 VAL A 88 PRO A 89 0 0.04 CISPEP 3 LYS B 66 PRO B 67 0 0.75 CISPEP 4 VAL B 88 PRO B 89 0 0.62 CRYST1 49.890 41.740 71.160 90.00 98.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020044 0.000000 0.002910 0.00000 SCALE2 0.000000 0.023958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014200 0.00000