HEADER OXIDOREDUCTASE 09-JUN-00 1F4T TITLE THERMOPHILIC P450: CYP119 FROM SULFOLOBUS SOLFACTARICUS WITH 4- TITLE 2 PHENYLIMIDAZOLE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 119; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYP119; COMPND 5 EC: 1.14.14.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PCWORI KEYWDS P450 FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.YANO,L.S.KOO,D.J.SCHULLER,H.LI,P.R.ORTIZ DE MONTELLANO,T.L.POULOS REVDAT 5 07-FEB-24 1F4T 1 REMARK LINK REVDAT 4 13-JUL-11 1F4T 1 VERSN REVDAT 3 24-FEB-09 1F4T 1 VERSN REVDAT 2 01-APR-03 1F4T 1 JRNL REVDAT 1 23-OCT-00 1F4T 0 JRNL AUTH J.K.YANO,L.S.KOO,D.J.SCHULLER,H.LI,P.R.ORTIZ DE MONTELLANO, JRNL AUTH 2 T.L.POULOS JRNL TITL CRYSTAL STRUCTURE OF A THERMOPHILIC CYTOCHROME P450 FROM THE JRNL TITL 2 ARCHAEON SULFOLOBUS SOLFATARICUS. JRNL REF J.BIOL.CHEM. V. 275 31086 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10859321 JRNL DOI 10.1074/JBC.M004281200 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3134779.770 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 57793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2913 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8099 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 445 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.36000 REMARK 3 B22 (A**2) : 3.45000 REMARK 3 B33 (A**2) : -10.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 46.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : MYTOPPAR:PARAM.CNS.HETERO REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : MYTOPPAR:TOPH.CNS.HETERO REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-00; 22-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : SSRL; ROTATING ANODE REMARK 200 BEAMLINE : BL7-1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.08; 1.54 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.030 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, EPPS, MGSO4, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.60050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.60050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.47900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.47900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.60050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.47900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.30000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.60050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.47900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.30000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 368 REMARK 465 GLU B 368 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 287 O HOH B 660 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 137 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 74.48 -118.79 REMARK 500 THR A 70 51.36 -113.42 REMARK 500 GLU A 114 120.67 -179.02 REMARK 500 LEU A 121 -57.08 -129.66 REMARK 500 GLU A 139 -77.15 -118.93 REMARK 500 SER A 312 139.59 -174.35 REMARK 500 CYS A 317 115.20 -31.59 REMARK 500 PRO A 350 94.60 -62.10 REMARK 500 THR B 64 0.59 -65.64 REMARK 500 TYR B 66 68.58 -117.63 REMARK 500 THR B 70 58.76 -113.48 REMARK 500 SER B 83 16.16 -143.86 REMARK 500 GLU B 114 133.09 -170.56 REMARK 500 LEU B 121 -59.12 -130.94 REMARK 500 GLU B 139 -69.49 -106.70 REMARK 500 LEU B 164 98.69 -66.53 REMARK 500 ASN B 229 64.93 38.50 REMARK 500 ASP B 269 -0.97 66.00 REMARK 500 CYS B 317 119.77 -37.88 REMARK 500 LEU B 344 -60.73 -90.09 REMARK 500 PRO B 350 -84.11 -25.85 REMARK 500 ASN B 351 113.26 41.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 369 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 139 OE1 REMARK 620 2 HIS A 178 NE2 106.2 REMARK 620 3 GLU B 139 OE1 119.1 110.6 REMARK 620 4 HIS B 178 NE2 100.8 116.8 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 410 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 317 SG REMARK 620 2 HEM A 410 NA 93.7 REMARK 620 3 HEM A 410 NB 85.8 91.6 REMARK 620 4 HEM A 410 NC 80.3 173.9 88.5 REMARK 620 5 HEM A 410 ND 90.1 89.9 175.7 89.6 REMARK 620 6 PIM A 411 N3 173.0 92.7 91.0 93.4 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 410 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 317 SG REMARK 620 2 HEM B 410 NA 94.9 REMARK 620 3 HEM B 410 NB 84.1 90.0 REMARK 620 4 HEM B 410 NC 80.3 175.2 89.7 REMARK 620 5 HEM B 410 ND 94.1 90.2 178.2 89.9 REMARK 620 6 PIM B 411 N3 172.6 92.1 93.7 92.7 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIM A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIM B 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F4U RELATED DB: PDB REMARK 900 CONTAINS SAME PROTEIN WITH HEME BOUND TO IMIDAZOLE DBREF 1F4T A 1 368 UNP Q55080 CPXW_SULSO 1 368 DBREF 1F4T B 1 368 UNP Q55080 CPXW_SULSO 1 368 SEQRES 1 A 368 MET TYR ASP TRP PHE SER GLU MET ARG LYS LYS ASP PRO SEQRES 2 A 368 VAL TYR TYR ASP GLY ASN ILE TRP GLN VAL PHE SER TYR SEQRES 3 A 368 ARG TYR THR LYS GLU VAL LEU ASN ASN PHE SER LYS PHE SEQRES 4 A 368 SER SER ASP LEU THR GLY TYR HIS GLU ARG LEU GLU ASP SEQRES 5 A 368 LEU ARG ASN GLY LYS ILE ARG PHE ASP ILE PRO THR ARG SEQRES 6 A 368 TYR THR MET LEU THR SER ASP PRO PRO LEU HIS ASP GLU SEQRES 7 A 368 LEU ARG SER MET SER ALA ASP ILE PHE SER PRO GLN LYS SEQRES 8 A 368 LEU GLN THR LEU GLU THR PHE ILE ARG GLU THR THR ARG SEQRES 9 A 368 SER LEU LEU ASP SER ILE ASP PRO ARG GLU ASP ASP ILE SEQRES 10 A 368 VAL LYS LYS LEU ALA VAL PRO LEU PRO ILE ILE VAL ILE SEQRES 11 A 368 SER LYS ILE LEU GLY LEU PRO ILE GLU ASP LYS GLU LYS SEQRES 12 A 368 PHE LYS GLU TRP SER ASP LEU VAL ALA PHE ARG LEU GLY SEQRES 13 A 368 LYS PRO GLY GLU ILE PHE GLU LEU GLY LYS LYS TYR LEU SEQRES 14 A 368 GLU LEU ILE GLY TYR VAL LYS ASP HIS LEU ASN SER GLY SEQRES 15 A 368 THR GLU VAL VAL SER ARG VAL VAL ASN SER ASN LEU SER SEQRES 16 A 368 ASP ILE GLU LYS LEU GLY TYR ILE ILE LEU LEU LEU ILE SEQRES 17 A 368 ALA GLY ASN GLU THR THR THR ASN LEU ILE SER ASN SER SEQRES 18 A 368 VAL ILE ASP PHE THR ARG PHE ASN LEU TRP GLN ARG ILE SEQRES 19 A 368 ARG GLU GLU ASN LEU TYR LEU LYS ALA ILE GLU GLU ALA SEQRES 20 A 368 LEU ARG TYR SER PRO PRO VAL MET ARG THR VAL ARG LYS SEQRES 21 A 368 THR LYS GLU ARG VAL LYS LEU GLY ASP GLN THR ILE GLU SEQRES 22 A 368 GLU GLY GLU TYR VAL ARG VAL TRP ILE ALA SER ALA ASN SEQRES 23 A 368 ARG ASP GLU GLU VAL PHE HIS ASP GLY GLU LYS PHE ILE SEQRES 24 A 368 PRO ASP ARG ASN PRO ASN PRO HIS LEU SER PHE GLY SER SEQRES 25 A 368 GLY ILE HIS LEU CYS LEU GLY ALA PRO LEU ALA ARG LEU SEQRES 26 A 368 GLU ALA ARG ILE ALA ILE GLU GLU PHE SER LYS ARG PHE SEQRES 27 A 368 ARG HIS ILE GLU ILE LEU ASP THR GLU LYS VAL PRO ASN SEQRES 28 A 368 GLU VAL LEU ASN GLY TYR LYS ARG LEU VAL VAL ARG LEU SEQRES 29 A 368 LYS SER ASN GLU SEQRES 1 B 368 MET TYR ASP TRP PHE SER GLU MET ARG LYS LYS ASP PRO SEQRES 2 B 368 VAL TYR TYR ASP GLY ASN ILE TRP GLN VAL PHE SER TYR SEQRES 3 B 368 ARG TYR THR LYS GLU VAL LEU ASN ASN PHE SER LYS PHE SEQRES 4 B 368 SER SER ASP LEU THR GLY TYR HIS GLU ARG LEU GLU ASP SEQRES 5 B 368 LEU ARG ASN GLY LYS ILE ARG PHE ASP ILE PRO THR ARG SEQRES 6 B 368 TYR THR MET LEU THR SER ASP PRO PRO LEU HIS ASP GLU SEQRES 7 B 368 LEU ARG SER MET SER ALA ASP ILE PHE SER PRO GLN LYS SEQRES 8 B 368 LEU GLN THR LEU GLU THR PHE ILE ARG GLU THR THR ARG SEQRES 9 B 368 SER LEU LEU ASP SER ILE ASP PRO ARG GLU ASP ASP ILE SEQRES 10 B 368 VAL LYS LYS LEU ALA VAL PRO LEU PRO ILE ILE VAL ILE SEQRES 11 B 368 SER LYS ILE LEU GLY LEU PRO ILE GLU ASP LYS GLU LYS SEQRES 12 B 368 PHE LYS GLU TRP SER ASP LEU VAL ALA PHE ARG LEU GLY SEQRES 13 B 368 LYS PRO GLY GLU ILE PHE GLU LEU GLY LYS LYS TYR LEU SEQRES 14 B 368 GLU LEU ILE GLY TYR VAL LYS ASP HIS LEU ASN SER GLY SEQRES 15 B 368 THR GLU VAL VAL SER ARG VAL VAL ASN SER ASN LEU SER SEQRES 16 B 368 ASP ILE GLU LYS LEU GLY TYR ILE ILE LEU LEU LEU ILE SEQRES 17 B 368 ALA GLY ASN GLU THR THR THR ASN LEU ILE SER ASN SER SEQRES 18 B 368 VAL ILE ASP PHE THR ARG PHE ASN LEU TRP GLN ARG ILE SEQRES 19 B 368 ARG GLU GLU ASN LEU TYR LEU LYS ALA ILE GLU GLU ALA SEQRES 20 B 368 LEU ARG TYR SER PRO PRO VAL MET ARG THR VAL ARG LYS SEQRES 21 B 368 THR LYS GLU ARG VAL LYS LEU GLY ASP GLN THR ILE GLU SEQRES 22 B 368 GLU GLY GLU TYR VAL ARG VAL TRP ILE ALA SER ALA ASN SEQRES 23 B 368 ARG ASP GLU GLU VAL PHE HIS ASP GLY GLU LYS PHE ILE SEQRES 24 B 368 PRO ASP ARG ASN PRO ASN PRO HIS LEU SER PHE GLY SER SEQRES 25 B 368 GLY ILE HIS LEU CYS LEU GLY ALA PRO LEU ALA ARG LEU SEQRES 26 B 368 GLU ALA ARG ILE ALA ILE GLU GLU PHE SER LYS ARG PHE SEQRES 27 B 368 ARG HIS ILE GLU ILE LEU ASP THR GLU LYS VAL PRO ASN SEQRES 28 B 368 GLU VAL LEU ASN GLY TYR LYS ARG LEU VAL VAL ARG LEU SEQRES 29 B 368 LYS SER ASN GLU HET ZN A 369 1 HET SO4 A 370 5 HET HEM A 410 43 HET PIM A 411 11 HET SO4 B 369 5 HET HEM B 410 43 HET PIM B 411 11 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PIM 4-PHENYL-1H-IMIDAZOLE HETSYN HEM HEME FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 HEM 2(C34 H32 FE N4 O4) FORMUL 6 PIM 2(C9 H8 N2) FORMUL 10 HOH *619(H2 O) HELIX 1 1 MET A 1 ASP A 12 1 12 HELIX 2 2 SER A 25 ASN A 35 1 11 HELIX 3 3 GLY A 45 ASN A 55 1 11 HELIX 4 4 ILE A 62 TYR A 66 5 5 HELIX 5 5 THR A 67 SER A 71 5 5 HELIX 6 6 PRO A 74 SER A 81 1 8 HELIX 7 7 SER A 88 SER A 109 1 22 HELIX 8 8 ILE A 117 LEU A 121 1 5 HELIX 9 9 VAL A 123 GLY A 135 1 13 HELIX 10 10 ASP A 140 GLY A 156 1 17 HELIX 11 11 GLY A 165 LEU A 179 1 15 HELIX 12 12 ASN A 180 GLY A 182 5 3 HELIX 13 13 THR A 183 ASN A 191 1 9 HELIX 14 14 SER A 195 ALA A 209 1 15 HELIX 15 15 GLY A 210 PHE A 228 1 19 HELIX 16 16 LEU A 230 ASN A 238 1 9 HELIX 17 17 LEU A 239 SER A 251 1 13 HELIX 18 18 TRP A 281 ASN A 286 1 6 HELIX 19 19 GLY A 319 ARG A 337 1 19 HELIX 20 20 MET B 1 ASP B 12 1 12 HELIX 21 21 SER B 25 ASN B 35 1 11 HELIX 22 22 GLY B 45 ASN B 55 1 11 HELIX 23 23 ILE B 62 TYR B 66 5 5 HELIX 24 24 THR B 67 SER B 71 5 5 HELIX 25 25 PRO B 74 SER B 81 1 8 HELIX 26 26 SER B 88 THR B 94 1 7 HELIX 27 27 LEU B 95 SER B 109 1 15 HELIX 28 28 ILE B 117 LEU B 121 1 5 HELIX 29 29 VAL B 123 GLY B 135 1 13 HELIX 30 30 ASP B 140 GLY B 156 1 17 HELIX 31 31 GLY B 165 LEU B 179 1 15 HELIX 32 32 ASN B 180 GLY B 182 5 3 HELIX 33 33 THR B 183 ASN B 191 1 9 HELIX 34 34 SER B 195 ALA B 209 1 15 HELIX 35 35 GLY B 210 PHE B 228 1 19 HELIX 36 36 LEU B 230 ASN B 238 1 9 HELIX 37 37 LEU B 239 SER B 251 1 13 HELIX 38 38 TRP B 281 ASN B 286 1 6 HELIX 39 39 GLY B 319 ARG B 337 1 19 SHEET 1 A 5 VAL A 14 TYR A 16 0 SHEET 2 A 5 TRP A 21 VAL A 23 -1 O GLN A 22 N TYR A 15 SHEET 3 A 5 TYR A 277 VAL A 280 1 O TYR A 277 N TRP A 21 SHEET 4 A 5 THR A 257 THR A 261 -1 O THR A 257 N VAL A 280 SHEET 5 A 5 PHE A 39 SER A 40 -1 N SER A 40 O LYS A 260 SHEET 1 B 3 ASP A 115 ASP A 116 0 SHEET 2 B 3 TYR A 357 SER A 366 -1 N VAL A 362 O ASP A 115 SHEET 3 B 3 PHE A 338 LYS A 348 -1 N ARG A 339 O LYS A 365 SHEET 1 C 2 VAL A 265 LEU A 267 0 SHEET 2 C 2 GLN A 270 ILE A 272 -1 O GLN A 270 N LEU A 267 SHEET 1 D 5 VAL B 14 TYR B 16 0 SHEET 2 D 5 TRP B 21 VAL B 23 -1 N GLN B 22 O TYR B 15 SHEET 3 D 5 TYR B 277 VAL B 280 1 O TYR B 277 N TRP B 21 SHEET 4 D 5 THR B 257 THR B 261 -1 O THR B 257 N VAL B 280 SHEET 5 D 5 PHE B 39 SER B 40 -1 N SER B 40 O LYS B 260 SHEET 1 E 3 ASP B 115 ASP B 116 0 SHEET 2 E 3 ARG B 359 SER B 366 -1 N VAL B 362 O ASP B 115 SHEET 3 E 3 PHE B 338 GLU B 347 -1 O ARG B 339 N LYS B 365 SHEET 1 F 2 VAL B 265 LEU B 267 0 SHEET 2 F 2 GLN B 270 ILE B 272 -1 O GLN B 270 N LEU B 267 LINK OE1 GLU A 139 ZN ZN A 369 1555 1555 2.00 LINK NE2 HIS A 178 ZN ZN A 369 1555 1555 1.96 LINK SG CYS A 317 FE HEM A 410 1555 1555 2.72 LINK ZN ZN A 369 OE1 GLU B 139 1555 1555 1.88 LINK ZN ZN A 369 NE2 HIS B 178 1555 1555 2.00 LINK FE HEM A 410 N3 PIM A 411 1555 1555 2.13 LINK SG CYS B 317 FE HEM B 410 1555 1555 2.64 LINK FE HEM B 410 N3 PIM B 411 1555 1555 2.14 CISPEP 1 PRO A 73 PRO A 74 0 0.00 CISPEP 2 ASN A 303 PRO A 304 0 -0.29 CISPEP 3 PRO B 73 PRO B 74 0 0.18 CISPEP 4 ASN B 303 PRO B 304 0 -0.58 SITE 1 AC1 4 GLU A 139 HIS A 178 GLU B 139 HIS B 178 SITE 1 AC2 9 LEU A 150 ARG A 154 GLU A 163 GLY A 165 SITE 2 AC2 9 LYS A 166 LYS A 167 TYR A 168 HOH A 497 SITE 3 AC2 9 HOH A 706 SITE 1 AC3 7 LEU B 150 ARG B 154 GLU B 163 GLY B 165 SITE 2 AC3 7 LYS B 166 LYS B 167 TYR B 168 SITE 1 AC4 21 MET A 68 LEU A 69 HIS A 76 ARG A 80 SITE 2 AC4 21 LEU A 205 LEU A 206 GLY A 210 THR A 213 SITE 3 AC4 21 THR A 214 THR A 257 ARG A 259 SER A 309 SITE 4 AC4 21 PHE A 310 GLY A 311 ILE A 314 HIS A 315 SITE 5 AC4 21 CYS A 317 GLY A 319 PIM A 411 HOH A 462 SITE 6 AC4 21 HOH A 472 SITE 1 AC5 5 ALA A 152 GLY A 156 ALA A 209 LEU A 354 SITE 2 AC5 5 HEM A 410 SITE 1 AC6 22 MET B 68 LEU B 69 HIS B 76 ARG B 80 SITE 2 AC6 22 LEU B 205 LEU B 206 GLY B 210 THR B 213 SITE 3 AC6 22 THR B 214 LEU B 217 THR B 257 ARG B 259 SITE 4 AC6 22 SER B 309 PHE B 310 GLY B 311 ILE B 314 SITE 5 AC6 22 HIS B 315 CYS B 317 GLY B 319 PIM B 411 SITE 6 AC6 22 HOH B 445 HOH B 462 SITE 1 AC7 4 ALA B 152 GLY B 156 ALA B 209 HEM B 410 CRYST1 76.958 114.600 185.201 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005400 0.00000