HEADER LYASE 19-JUN-00 1F61 TITLE CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS ALPHA-BETA BARREL, SWAPPED HELICES, APO-ENZYME, OPEN CONFORMATION, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, TBSGC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.SHARMA,S.SHARMA,K.H.HOENER ZU BENTRUP,J.D.MCKINNEY,D.G.RUSSELL, AUTHOR 2 W.R.JACOBS JR.,J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (TBSGC) REVDAT 5 07-FEB-24 1F61 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1F61 1 VERSN REVDAT 3 24-FEB-09 1F61 1 VERSN REVDAT 2 01-FEB-05 1F61 1 JRNL AUTHOR KEYWDS REMARK REVDAT 1 30-AUG-00 1F61 0 JRNL AUTH V.SHARMA,S.SHARMA,K.HOENER ZU BENTRUP,J.D.MCKINNEY, JRNL AUTH 2 D.G.RUSSELL,W.R.JACOBS JR.,J.C.SACCHETTINI JRNL TITL STRUCTURE OF ISOCITRATE LYASE, A PERSISTENCE FACTOR OF JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF NAT.STRUCT.BIOL. V. 7 663 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 10932251 JRNL DOI 10.1038/77964 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 665225.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 77576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8587 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12410 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1389 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 692 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.26000 REMARK 3 B22 (A**2) : 3.26000 REMARK 3 B33 (A**2) : -6.51000 REMARK 3 B12 (A**2) : 1.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.040 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.750 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.220 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 54.25 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-99; 13-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791; 0.9798 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1; ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97699 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.08 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, HEPES, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 192.27000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.13500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 144.20250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.06750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 240.33750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 192.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 96.13500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.06750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 144.20250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 240.33750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -190.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 65.12250 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 112.79548 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.06750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 977 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 978 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1049 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 976 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 979 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1013 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1077 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 419 REMARK 465 GLY A 420 REMARK 465 SER A 421 REMARK 465 THR A 422 REMARK 465 GLU A 423 REMARK 465 GLU A 424 REMARK 465 GLY A 425 REMARK 465 GLN A 426 REMARK 465 PHE A 427 REMARK 465 HIS A 428 REMARK 465 MET B 0 REMARK 465 THR B 419 REMARK 465 GLY B 420 REMARK 465 SER B 421 REMARK 465 THR B 422 REMARK 465 GLU B 423 REMARK 465 GLU B 424 REMARK 465 GLY B 425 REMARK 465 GLN B 426 REMARK 465 PHE B 427 REMARK 465 HIS B 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 276 O HOH A 533 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1157 O HOH A 1157 10665 1.50 REMARK 500 O HOH A 1159 O HOH A 1159 10665 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 404 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 10.83 -160.03 REMARK 500 ALA A 99 51.76 -156.26 REMARK 500 GLN A 109 39.88 -146.10 REMARK 500 GLU A 155 -132.00 53.46 REMARK 500 ASP A 183 38.96 -97.07 REMARK 500 GLN A 369 -124.15 42.96 REMARK 500 ASP B 98 11.07 -157.17 REMARK 500 ALA B 99 50.45 -155.69 REMARK 500 GLN B 109 35.20 -147.13 REMARK 500 GLU B 155 -130.25 46.49 REMARK 500 ASP B 183 40.23 -100.77 REMARK 500 HIS B 193 120.93 -37.70 REMARK 500 PRO B 222 47.10 -83.53 REMARK 500 GLN B 369 -126.48 46.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 451 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 ASP A 108 OD1 50.4 REMARK 620 3 GLU A 155 OE1 136.2 85.8 REMARK 620 4 HOH A 575 O 137.2 165.4 85.4 REMARK 620 5 HOH A 690 O 80.6 98.4 110.0 95.6 REMARK 620 6 HOH A 699 O 91.0 82.8 82.2 84.5 167.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 108 OD2 REMARK 620 2 ASP B 108 OD1 50.9 REMARK 620 3 GLU B 155 OE1 143.3 92.3 REMARK 620 4 HOH B 595 O 82.7 96.3 105.2 REMARK 620 5 HOH B 635 O 90.7 89.5 87.9 165.3 REMARK 620 6 HOH B 705 O 129.5 174.1 86.9 89.5 84.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 452 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0467 RELATED DB: TARGETDB DBREF 1F61 A 0 428 UNP P0A5H3 ACEA_MYCTU 1 428 DBREF 1F61 B 0 428 UNP P0A5H3 ACEA_MYCTU 1 428 SEQADV 1F61 ALA A 1 UNP P0A5H3 INSERTION SEQADV 1F61 ALA B 1 UNP P0A5H3 INSERTION SEQRES 1 A 429 MET ALA SER VAL VAL GLY THR PRO LYS SER ALA GLU GLN SEQRES 2 A 429 ILE GLN GLN GLU TRP ASP THR ASN PRO ARG TRP LYS ASP SEQRES 3 A 429 VAL THR ARG THR TYR SER ALA GLU ASP VAL VAL ALA LEU SEQRES 4 A 429 GLN GLY SER VAL VAL GLU GLU HIS THR LEU ALA ARG ARG SEQRES 5 A 429 GLY ALA GLU VAL LEU TRP GLU GLN LEU HIS ASP LEU GLU SEQRES 6 A 429 TRP VAL ASN ALA LEU GLY ALA LEU THR GLY ASN MET ALA SEQRES 7 A 429 VAL GLN GLN VAL ARG ALA GLY LEU LYS ALA ILE TYR LEU SEQRES 8 A 429 SER GLY TRP GLN VAL ALA GLY ASP ALA ASN LEU SER GLY SEQRES 9 A 429 HIS THR TYR PRO ASP GLN SER LEU TYR PRO ALA ASN SER SEQRES 10 A 429 VAL PRO GLN VAL VAL ARG ARG ILE ASN ASN ALA LEU GLN SEQRES 11 A 429 ARG ALA ASP GLN ILE ALA LYS ILE GLU GLY ASP THR SER SEQRES 12 A 429 VAL GLU ASN TRP LEU ALA PRO ILE VAL ALA ASP GLY GLU SEQRES 13 A 429 ALA GLY PHE GLY GLY ALA LEU ASN VAL TYR GLU LEU GLN SEQRES 14 A 429 LYS ALA LEU ILE ALA ALA GLY VAL ALA GLY SER HIS TRP SEQRES 15 A 429 GLU ASP GLN LEU ALA SER GLU LYS LYS CYS GLY HIS LEU SEQRES 16 A 429 GLY GLY LYS VAL LEU ILE PRO THR GLN GLN HIS ILE ARG SEQRES 17 A 429 THR LEU THR SER ALA ARG LEU ALA ALA ASP VAL ALA ASP SEQRES 18 A 429 VAL PRO THR VAL VAL ILE ALA ARG THR ASP ALA GLU ALA SEQRES 19 A 429 ALA THR LEU ILE THR SER ASP VAL ASP GLU ARG ASP GLN SEQRES 20 A 429 PRO PHE ILE THR GLY GLU ARG THR ARG GLU GLY PHE TYR SEQRES 21 A 429 ARG THR LYS ASN GLY ILE GLU PRO CYS ILE ALA ARG ALA SEQRES 22 A 429 LYS ALA TYR ALA PRO PHE ALA ASP LEU ILE TRP MET GLU SEQRES 23 A 429 THR GLY THR PRO ASP LEU GLU ALA ALA ARG GLN PHE SER SEQRES 24 A 429 GLU ALA VAL LYS ALA GLU TYR PRO ASP GLN MET LEU ALA SEQRES 25 A 429 TYR ASN CYS SER PRO SER PHE ASN TRP LYS LYS HIS LEU SEQRES 26 A 429 ASP ASP ALA THR ILE ALA LYS PHE GLN LYS GLU LEU ALA SEQRES 27 A 429 ALA MET GLY PHE LYS PHE GLN PHE ILE THR LEU ALA GLY SEQRES 28 A 429 PHE HIS ALA LEU ASN TYR SER MET PHE ASP LEU ALA TYR SEQRES 29 A 429 GLY TYR ALA GLN ASN GLN MET SER ALA TYR VAL GLU LEU SEQRES 30 A 429 GLN GLU ARG GLU PHE ALA ALA GLU GLU ARG GLY TYR THR SEQRES 31 A 429 ALA THR LYS HIS GLN ARG GLU VAL GLY ALA GLY TYR PHE SEQRES 32 A 429 ASP ARG ILE ALA THR THR VAL ASP PRO ASN SER SER THR SEQRES 33 A 429 THR ALA LEU THR GLY SER THR GLU GLU GLY GLN PHE HIS SEQRES 1 B 429 MET ALA SER VAL VAL GLY THR PRO LYS SER ALA GLU GLN SEQRES 2 B 429 ILE GLN GLN GLU TRP ASP THR ASN PRO ARG TRP LYS ASP SEQRES 3 B 429 VAL THR ARG THR TYR SER ALA GLU ASP VAL VAL ALA LEU SEQRES 4 B 429 GLN GLY SER VAL VAL GLU GLU HIS THR LEU ALA ARG ARG SEQRES 5 B 429 GLY ALA GLU VAL LEU TRP GLU GLN LEU HIS ASP LEU GLU SEQRES 6 B 429 TRP VAL ASN ALA LEU GLY ALA LEU THR GLY ASN MET ALA SEQRES 7 B 429 VAL GLN GLN VAL ARG ALA GLY LEU LYS ALA ILE TYR LEU SEQRES 8 B 429 SER GLY TRP GLN VAL ALA GLY ASP ALA ASN LEU SER GLY SEQRES 9 B 429 HIS THR TYR PRO ASP GLN SER LEU TYR PRO ALA ASN SER SEQRES 10 B 429 VAL PRO GLN VAL VAL ARG ARG ILE ASN ASN ALA LEU GLN SEQRES 11 B 429 ARG ALA ASP GLN ILE ALA LYS ILE GLU GLY ASP THR SER SEQRES 12 B 429 VAL GLU ASN TRP LEU ALA PRO ILE VAL ALA ASP GLY GLU SEQRES 13 B 429 ALA GLY PHE GLY GLY ALA LEU ASN VAL TYR GLU LEU GLN SEQRES 14 B 429 LYS ALA LEU ILE ALA ALA GLY VAL ALA GLY SER HIS TRP SEQRES 15 B 429 GLU ASP GLN LEU ALA SER GLU LYS LYS CYS GLY HIS LEU SEQRES 16 B 429 GLY GLY LYS VAL LEU ILE PRO THR GLN GLN HIS ILE ARG SEQRES 17 B 429 THR LEU THR SER ALA ARG LEU ALA ALA ASP VAL ALA ASP SEQRES 18 B 429 VAL PRO THR VAL VAL ILE ALA ARG THR ASP ALA GLU ALA SEQRES 19 B 429 ALA THR LEU ILE THR SER ASP VAL ASP GLU ARG ASP GLN SEQRES 20 B 429 PRO PHE ILE THR GLY GLU ARG THR ARG GLU GLY PHE TYR SEQRES 21 B 429 ARG THR LYS ASN GLY ILE GLU PRO CYS ILE ALA ARG ALA SEQRES 22 B 429 LYS ALA TYR ALA PRO PHE ALA ASP LEU ILE TRP MET GLU SEQRES 23 B 429 THR GLY THR PRO ASP LEU GLU ALA ALA ARG GLN PHE SER SEQRES 24 B 429 GLU ALA VAL LYS ALA GLU TYR PRO ASP GLN MET LEU ALA SEQRES 25 B 429 TYR ASN CYS SER PRO SER PHE ASN TRP LYS LYS HIS LEU SEQRES 26 B 429 ASP ASP ALA THR ILE ALA LYS PHE GLN LYS GLU LEU ALA SEQRES 27 B 429 ALA MET GLY PHE LYS PHE GLN PHE ILE THR LEU ALA GLY SEQRES 28 B 429 PHE HIS ALA LEU ASN TYR SER MET PHE ASP LEU ALA TYR SEQRES 29 B 429 GLY TYR ALA GLN ASN GLN MET SER ALA TYR VAL GLU LEU SEQRES 30 B 429 GLN GLU ARG GLU PHE ALA ALA GLU GLU ARG GLY TYR THR SEQRES 31 B 429 ALA THR LYS HIS GLN ARG GLU VAL GLY ALA GLY TYR PHE SEQRES 32 B 429 ASP ARG ILE ALA THR THR VAL ASP PRO ASN SER SER THR SEQRES 33 B 429 THR ALA LEU THR GLY SER THR GLU GLU GLY GLN PHE HIS HET MG A 451 1 HET MG B 452 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *692(H2 O) HELIX 1 1 SER A 9 ASN A 20 1 12 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 SER A 31 LEU A 38 1 8 HELIX 4 4 HIS A 46 LEU A 63 1 18 HELIX 5 5 THR A 73 ALA A 83 1 11 HELIX 6 6 SER A 91 ALA A 99 1 9 HELIX 7 7 ASN A 115 GLY A 139 1 25 HELIX 8 8 GLY A 160 GLY A 175 1 16 HELIX 9 9 LEU A 185 LYS A 189 5 5 HELIX 10 10 PRO A 201 ALA A 219 1 19 HELIX 11 11 ASP A 245 PRO A 247 5 3 HELIX 12 12 GLY A 264 ALA A 276 1 13 HELIX 13 13 PRO A 277 ALA A 279 5 3 HELIX 14 14 ASP A 290 ALA A 303 1 14 HELIX 15 15 ASN A 319 LEU A 324 1 6 HELIX 16 16 ASP A 325 MET A 339 1 15 HELIX 17 17 LEU A 348 GLN A 369 1 22 HELIX 18 18 GLN A 369 GLU A 384 1 16 HELIX 19 19 GLU A 385 GLY A 387 5 3 HELIX 20 20 LYS A 392 VAL A 397 1 6 HELIX 21 21 GLY A 398 ASP A 410 1 13 HELIX 22 22 SER B 9 ASN B 20 1 12 HELIX 23 23 PRO B 21 LYS B 24 5 4 HELIX 24 24 SER B 31 GLN B 39 1 9 HELIX 25 25 HIS B 46 LEU B 63 1 18 HELIX 26 26 THR B 73 ALA B 83 1 11 HELIX 27 27 SER B 91 ALA B 99 1 9 HELIX 28 28 ASN B 115 GLY B 139 1 25 HELIX 29 29 GLY B 160 GLY B 175 1 16 HELIX 30 30 LEU B 185 LYS B 189 5 5 HELIX 31 31 PRO B 201 ALA B 219 1 19 HELIX 32 32 ASP B 245 PRO B 247 5 3 HELIX 33 33 GLY B 264 ALA B 276 1 13 HELIX 34 34 PRO B 277 ALA B 279 5 3 HELIX 35 35 ASP B 290 TYR B 305 1 16 HELIX 36 36 ASN B 319 LEU B 324 1 6 HELIX 37 37 ASP B 325 MET B 339 1 15 HELIX 38 38 LEU B 348 GLN B 369 1 22 HELIX 39 39 GLN B 369 GLU B 384 1 16 HELIX 40 40 GLU B 385 GLY B 387 5 3 HELIX 41 41 LYS B 392 VAL B 397 1 6 HELIX 42 42 GLY B 398 ASP B 410 1 13 SHEET 1 A 8 VAL A 66 LEU A 69 0 SHEET 2 A 8 PHE A 341 ILE A 346 1 O LYS A 342 N VAL A 66 SHEET 3 A 8 MET A 309 ASN A 313 1 O LEU A 310 N PHE A 343 SHEET 4 A 8 LEU A 281 MET A 284 1 O ILE A 282 N ALA A 311 SHEET 5 A 8 VAL A 224 THR A 229 1 O VAL A 225 N LEU A 281 SHEET 6 A 8 GLY A 178 GLU A 182 1 O SER A 179 N ILE A 226 SHEET 7 A 8 ILE A 150 ASP A 153 1 O ILE A 150 N GLY A 178 SHEET 8 A 8 ILE A 88 LEU A 90 1 O ILE A 88 N VAL A 151 SHEET 1 B 4 VAL A 198 LEU A 199 0 SHEET 2 B 4 LEU A 236 ILE A 237 1 O LEU A 236 N LEU A 199 SHEET 3 B 4 TYR A 259 THR A 261 -1 N TYR A 259 O ILE A 237 SHEET 4 B 4 ILE A 249 ARG A 253 -1 N THR A 250 O ARG A 260 SHEET 1 C 8 VAL B 66 LEU B 69 0 SHEET 2 C 8 PHE B 341 ILE B 346 1 O LYS B 342 N VAL B 66 SHEET 3 C 8 MET B 309 ASN B 313 1 O LEU B 310 N PHE B 343 SHEET 4 C 8 LEU B 281 MET B 284 1 O ILE B 282 N ALA B 311 SHEET 5 C 8 VAL B 224 THR B 229 1 O VAL B 225 N LEU B 281 SHEET 6 C 8 GLY B 178 GLU B 182 1 O SER B 179 N ILE B 226 SHEET 7 C 8 ILE B 150 ASP B 153 1 O ILE B 150 N GLY B 178 SHEET 8 C 8 ILE B 88 LEU B 90 1 O ILE B 88 N VAL B 151 SHEET 1 D 4 VAL B 198 LEU B 199 0 SHEET 2 D 4 LEU B 236 ILE B 237 1 O LEU B 236 N LEU B 199 SHEET 3 D 4 TYR B 259 THR B 261 -1 N TYR B 259 O ILE B 237 SHEET 4 D 4 ILE B 249 ARG B 253 -1 N THR B 250 O ARG B 260 LINK OD2 ASP A 108 MG MG A 451 1555 1555 2.73 LINK OD1 ASP A 108 MG MG A 451 1555 1555 2.47 LINK OE1 GLU A 155 MG MG A 451 1555 1555 2.52 LINK MG MG A 451 O HOH A 575 1555 1555 2.53 LINK MG MG A 451 O HOH A 690 1555 1555 2.25 LINK MG MG A 451 O HOH A 699 1555 1555 2.29 LINK OD2 ASP B 108 MG MG B 452 1555 1555 2.76 LINK OD1 ASP B 108 MG MG B 452 1555 1555 2.30 LINK OE1 GLU B 155 MG MG B 452 1555 1555 2.34 LINK MG MG B 452 O HOH B 595 1555 1555 2.35 LINK MG MG B 452 O HOH B 635 1555 1555 2.21 LINK MG MG B 452 O HOH B 705 1555 1555 2.52 SITE 1 AC1 5 ASP A 108 GLU A 155 HOH A 575 HOH A 690 SITE 2 AC1 5 HOH A 699 SITE 1 AC2 5 ASP B 108 GLU B 155 HOH B 595 HOH B 635 SITE 2 AC2 5 HOH B 705 CRYST1 130.245 130.245 288.405 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007678 0.004433 0.000000 0.00000 SCALE2 0.000000 0.008866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003467 0.00000