HEADER LIGASE/RNA 28-JUN-00 1F7V TITLE CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TITLE 2 TRNAARG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA(ARG); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ARGINYL-TRNA SYNTHETASE; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: CYTOPLASMIC ARGININE-TRNA LIGASE, ARGRS; COMPND 9 EC: 6.1.1.19; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN YEAST SACCHAROMYCES SOURCE 4 CEREVISAE; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PTRC99 KEYWDS TRNA-PROTEIN COMPLEX, AMINOACYLATION, ARGINYL-TRNA SYNTHETASE, KEYWDS 2 LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.DELAGOUTTE,D.MORAS,J.CAVARELLI REVDAT 4 07-FEB-24 1F7V 1 LINK REVDAT 3 13-JUL-11 1F7V 1 VERSN REVDAT 2 24-FEB-09 1F7V 1 VERSN REVDAT 1 27-JUN-01 1F7V 0 JRNL AUTH B.DELAGOUTTE,D.MORAS,J.CAVARELLI JRNL TITL TRNA AMINOACYLATION BY ARGINYL-TRNA SYNTHETASE: INDUCED JRNL TITL 2 CONFORMATIONS DURING SUBSTRATES BINDING JRNL REF EMBO J. V. 19 5599 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 11060012 JRNL DOI 10.1093/EMBOJ/19.21.5599 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.DELAGOUTTE,G.KEITH,D.MORAS,J.CAVARELLI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF YEAST ARGINYL-TRNA SYNTHETASE - YEAST TRNAARG REMARK 1 TITL 3 COMPLEXES REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 492 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900001700 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2531107.580 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2875 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4238 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 498 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4892 REMARK 3 NUCLEIC ACID ATOMS : 1567 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.06000 REMARK 3 B22 (A**2) : -12.87000 REMARK 3 B33 (A**2) : 20.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.040 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.880 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.710 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.700 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 26.52 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M (NH4)2SO4, HEXANEDIOL, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP AT 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.86050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.80300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.00300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.86050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.80300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.00300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.86050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.80300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.00300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.86050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.80300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.00300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C B 974 REMARK 465 C B 975 REMARK 465 A B 976 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -141.11 -149.17 REMARK 500 SER A 15 64.48 -107.12 REMARK 500 LYS A 131 -116.63 43.60 REMARK 500 GLU A 132 -8.42 -53.73 REMARK 500 SER A 136 159.27 -48.08 REMARK 500 CYS A 137 131.22 -173.98 REMARK 500 ASN A 142 73.41 50.91 REMARK 500 SER A 150 -69.47 78.82 REMARK 500 SER A 151 61.78 33.14 REMARK 500 ILE A 154 -8.48 -56.73 REMARK 500 GLU A 209 -36.03 -28.20 REMARK 500 SER A 237 -93.97 -72.41 REMARK 500 ILE A 238 124.48 -39.91 REMARK 500 LEU A 240 -75.73 -16.09 REMARK 500 GLU A 241 -38.23 -39.53 REMARK 500 ASP A 259 92.48 -30.23 REMARK 500 LEU A 263 0.78 -59.85 REMARK 500 SER A 292 -156.86 -74.31 REMARK 500 ASN A 330 115.01 -160.89 REMARK 500 GLU A 437 -70.69 -48.40 REMARK 500 ASP A 484 86.95 -68.30 REMARK 500 LEU A 519 44.04 -103.27 REMARK 500 VAL A 567 -28.24 -141.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BS2 RELATED DB: PDB REMARK 900 ARGINYL-TRNA SYNTHETASE WITH L-ARG AT 2.75 A REMARK 900 RELATED ID: 1F7U RELATED DB: PDB REMARK 900 ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG) AND L-ARG AT 2.2 A DBREF 1F7V A 1 607 UNP Q05506 SYRC_YEAST 1 607 DBREF 1F7V B 901 976 PDB 1F7V 1F7V 901 976 SEQRES 1 B 76 PSU U C C U C G U 1MG 2MG C C C SEQRES 2 B 76 A A H2U G G H2U C A C G G C M2G SEQRES 3 B 76 PSU C U G G C U I C G A A C SEQRES 4 B 76 C A G A A G A H2U U 5MC C A G SEQRES 5 B 76 G 5MU PSU C A 1MA G U C C U G G SEQRES 6 B 76 C G G G G A A G C C A SEQRES 1 A 607 MET ALA SER THR ALA ASN MET ILE SER GLN LEU LYS LYS SEQRES 2 A 607 LEU SER ILE ALA GLU PRO ALA VAL ALA LYS ASP SER HIS SEQRES 3 A 607 PRO ASP VAL ASN ILE VAL ASP LEU MET ARG ASN TYR ILE SEQRES 4 A 607 SER GLN GLU LEU SER LYS ILE SER GLY VAL ASP SER SER SEQRES 5 A 607 LEU ILE PHE PRO ALA LEU GLU TRP THR ASN THR MET GLU SEQRES 6 A 607 ARG GLY ASP LEU LEU ILE PRO ILE PRO ARG LEU ARG ILE SEQRES 7 A 607 LYS GLY ALA ASN PRO LYS ASP LEU ALA VAL GLN TRP ALA SEQRES 8 A 607 GLU LYS PHE PRO CYS GLY ASP PHE LEU GLU LYS VAL GLU SEQRES 9 A 607 ALA ASN GLY PRO PHE ILE GLN PHE PHE PHE ASN PRO GLN SEQRES 10 A 607 PHE LEU ALA LYS LEU VAL ILE PRO ASP ILE LEU THR ARG SEQRES 11 A 607 LYS GLU ASP TYR GLY SER CYS LYS LEU VAL GLU ASN LYS SEQRES 12 A 607 LYS VAL ILE ILE GLU PHE SER SER PRO ASN ILE ALA LYS SEQRES 13 A 607 PRO PHE HIS ALA GLY HIS LEU ARG SER THR ILE ILE GLY SEQRES 14 A 607 GLY PHE LEU ALA ASN LEU TYR GLU LYS LEU GLY TRP GLU SEQRES 15 A 607 VAL ILE ARG MET ASN TYR LEU GLY ASP TRP GLY LYS GLN SEQRES 16 A 607 PHE GLY LEU LEU ALA VAL GLY PHE GLU ARG TYR GLY ASN SEQRES 17 A 607 GLU GLU ALA LEU VAL LYS ASP PRO ILE HIS HIS LEU PHE SEQRES 18 A 607 ASP VAL TYR VAL ARG ILE ASN LYS ASP ILE GLU GLU GLU SEQRES 19 A 607 GLY ASP SER ILE PRO LEU GLU GLN SER THR ASN GLY LYS SEQRES 20 A 607 ALA ARG GLU TYR PHE LYS ARG MET GLU ASP GLY ASP GLU SEQRES 21 A 607 GLU ALA LEU LYS ILE TRP LYS ARG PHE ARG GLU PHE SER SEQRES 22 A 607 ILE GLU LYS TYR ILE ASP THR TYR ALA ARG LEU ASN ILE SEQRES 23 A 607 LYS TYR ASP VAL TYR SER GLY GLU SER GLN VAL SER LYS SEQRES 24 A 607 GLU SER MET LEU LYS ALA ILE ASP LEU PHE LYS GLU LYS SEQRES 25 A 607 GLY LEU THR HIS GLU ASP LYS GLY ALA VAL LEU ILE ASP SEQRES 26 A 607 LEU THR LYS PHE ASN LYS LYS LEU GLY LYS ALA ILE VAL SEQRES 27 A 607 GLN LYS SER ASP GLY THR THR LEU TYR LEU THR ARG ASP SEQRES 28 A 607 VAL GLY ALA ALA MET ASP ARG TYR GLU LYS TYR HIS PHE SEQRES 29 A 607 ASP LYS MET ILE TYR VAL ILE ALA SER GLN GLN ASP LEU SEQRES 30 A 607 HIS ALA ALA GLN PHE PHE GLU ILE LEU LYS GLN MET GLY SEQRES 31 A 607 PHE GLU TRP ALA LYS ASP LEU GLN HIS VAL ASN PHE GLY SEQRES 32 A 607 MET VAL GLN GLY MET SER THR ARG LYS GLY THR VAL VAL SEQRES 33 A 607 PHE LEU ASP ASN ILE LEU GLU GLU THR LYS GLU LYS MET SEQRES 34 A 607 HIS GLU VAL MET LYS LYS ASN GLU ASN LYS TYR ALA GLN SEQRES 35 A 607 ILE GLU HIS PRO GLU GLU VAL ALA ASP LEU VAL GLY ILE SEQRES 36 A 607 SER ALA VAL MET ILE GLN ASP MET GLN GLY LYS ARG ILE SEQRES 37 A 607 ASN ASN TYR GLU PHE LYS TRP GLU ARG MET LEU SER PHE SEQRES 38 A 607 GLU GLY ASP THR GLY PRO TYR LEU GLN TYR ALA HIS SER SEQRES 39 A 607 ARG LEU ARG SER VAL GLU ARG ASN ALA SER GLY ILE THR SEQRES 40 A 607 GLN GLU LYS TRP ILE ASN ALA ASP PHE SER LEU LEU LYS SEQRES 41 A 607 GLU PRO ALA ALA LYS LEU LEU ILE ARG LEU LEU GLY GLN SEQRES 42 A 607 TYR PRO ASP VAL LEU ARG ASN ALA ILE LYS THR HIS GLU SEQRES 43 A 607 PRO THR THR VAL VAL THR TYR LEU PHE LYS LEU THR HIS SEQRES 44 A 607 GLN VAL SER SER CYS TYR ASP VAL LEU TRP VAL ALA GLY SEQRES 45 A 607 GLN THR GLU GLU LEU ALA THR ALA ARG LEU ALA LEU TYR SEQRES 46 A 607 GLY ALA ALA ARG GLN VAL LEU TYR ASN GLY MET ARG LEU SEQRES 47 A 607 LEU GLY LEU THR PRO VAL GLU ARG MET MODRES 1F7V PSU B 901 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1F7V 1MG B 909 G 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1F7V 2MG B 910 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1F7V H2U B 916 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1F7V H2U B 919 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1F7V M2G B 926 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1F7V PSU B 927 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1F7V H2U B 947 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1F7V 5MC B 949 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1F7V 5MU B 954 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1F7V PSU B 955 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1F7V 1MA B 958 A HET PSU B 901 21 HET 1MG B 909 24 HET 2MG B 910 24 HET H2U B 916 20 HET H2U B 919 20 HET M2G B 926 25 HET PSU B 927 20 HET H2U B 947 20 HET 5MC B 949 21 HET 5MU B 954 21 HET PSU B 955 20 HET 1MA B 958 23 HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 1MG 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE FORMUL 1 PSU 3(C9 H13 N2 O9 P) FORMUL 1 1MG C11 H16 N5 O8 P FORMUL 1 2MG C11 H16 N5 O8 P FORMUL 1 H2U 3(C9 H15 N2 O9 P) FORMUL 1 M2G C12 H18 N5 O8 P FORMUL 1 5MC C10 H16 N3 O8 P FORMUL 1 5MU C10 H15 N2 O9 P FORMUL 1 1MA C11 H16 N5 O7 P FORMUL 3 HOH *44(H2 O) HELIX 1 1 SER A 3 LYS A 13 1 11 HELIX 2 2 ALA A 20 ASP A 24 5 5 HELIX 3 3 ASN A 30 GLY A 48 1 19 HELIX 4 4 ASP A 50 PHE A 55 1 6 HELIX 5 5 PRO A 56 LEU A 58 5 3 HELIX 6 6 PRO A 74 ARG A 77 5 4 HELIX 7 7 ASN A 82 LYS A 93 1 12 HELIX 8 8 ASN A 115 LYS A 131 1 17 HELIX 9 9 GLU A 132 TYR A 134 5 3 HELIX 10 10 HIS A 162 LEU A 179 1 18 HELIX 11 11 GLY A 193 GLY A 207 1 15 HELIX 12 12 ASN A 208 ASP A 215 1 8 HELIX 13 13 ASP A 215 GLU A 234 1 20 HELIX 14 14 PRO A 239 GLN A 242 5 4 HELIX 15 15 SER A 243 GLY A 258 1 16 HELIX 16 16 GLU A 261 ARG A 283 1 23 HELIX 17 17 SER A 295 VAL A 297 5 3 HELIX 18 18 SER A 298 LYS A 312 1 15 HELIX 19 19 THR A 327 PHE A 329 5 3 HELIX 20 20 LEU A 346 HIS A 363 1 18 HELIX 21 21 ALA A 372 GLN A 374 5 3 HELIX 22 22 GLN A 375 MET A 389 1 15 HELIX 23 23 PHE A 391 LYS A 395 5 5 HELIX 24 24 PHE A 417 LYS A 435 1 19 HELIX 25 25 ASN A 436 GLN A 442 1 7 HELIX 26 26 HIS A 445 GLN A 464 1 20 HELIX 27 27 LYS A 474 SER A 480 1 7 HELIX 28 28 THR A 485 ASN A 502 1 18 HELIX 29 29 THR A 507 ASN A 513 1 7 HELIX 30 30 ASP A 515 LEU A 519 5 5 HELIX 31 31 GLU A 521 GLY A 532 1 12 HELIX 32 32 GLN A 533 HIS A 545 1 13 HELIX 33 33 GLU A 546 ASP A 566 1 21 HELIX 34 34 THR A 574 GLY A 600 1 27 SHEET 1 A 4 GLU A 59 TRP A 60 0 SHEET 2 A 4 LEU A 69 PRO A 72 -1 O LEU A 70 N GLU A 59 SHEET 3 A 4 PHE A 109 PHE A 114 -1 O ILE A 110 N ILE A 71 SHEET 4 A 4 LEU A 100 ASN A 106 -1 N GLU A 101 O PHE A 113 SHEET 1 B 5 VAL A 290 GLY A 293 0 SHEET 2 B 5 TRP A 181 LEU A 189 1 O ARG A 185 N VAL A 290 SHEET 3 B 5 LYS A 143 PHE A 149 1 O LYS A 143 N GLU A 182 SHEET 4 B 5 LYS A 366 VAL A 370 1 O LYS A 366 N ILE A 146 SHEET 5 B 5 LEU A 397 HIS A 399 1 O GLN A 398 N TYR A 369 SHEET 1 C 3 HIS A 316 ASP A 318 0 SHEET 2 C 3 ALA A 321 ASP A 325 -1 N ALA A 321 O ASP A 318 SHEET 3 C 3 LYS A 335 GLN A 339 -1 N ALA A 336 O ILE A 324 SHEET 1 D 2 VAL A 405 GLN A 406 0 SHEET 2 D 2 TYR A 471 GLU A 472 1 O TYR A 471 N GLN A 406 LINK O3' PSU B 901 P U B 902 1555 1555 1.60 LINK O3' U B 908 P 1MG B 909 1555 1555 1.60 LINK O3' 1MG B 909 P 2MG B 910 1555 1555 1.60 LINK O3' 2MG B 910 P C B 911 1555 1555 1.60 LINK O3' A B 915 P H2U B 916 1555 1555 1.60 LINK O3' H2U B 916 P G B 917 1555 1555 1.60 LINK O3' G B 918 P H2U B 919 1555 1555 1.60 LINK O3' H2U B 919 P C B 920 1555 1555 1.60 LINK O3' C B 925 P M2G B 926 1555 1555 1.61 LINK O3' M2G B 926 P PSU B 927 1555 1555 1.61 LINK O3' PSU B 927 P C B 928 1555 1555 1.60 LINK O3' A B 946 P H2U B 947 1555 1555 1.60 LINK O3' H2U B 947 P U B 948 1555 1555 1.61 LINK O3' U B 948 P 5MC B 949 1555 1555 1.61 LINK O3' 5MC B 949 P C B 950 1555 1555 1.60 LINK O3' G B 953 P 5MU B 954 1555 1555 1.60 LINK O3' 5MU B 954 P PSU B 955 1555 1555 1.61 LINK O3' PSU B 955 P C B 956 1555 1555 1.61 LINK O3' A B 957 P 1MA B 958 1555 1555 1.61 LINK O3' 1MA B 958 P G B 959 1555 1555 1.60 CRYST1 107.721 129.606 184.006 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005435 0.00000 HETATM 1 N1 PSU B 901 38.524 4.925 63.070 1.00 74.67 N HETATM 2 C2 PSU B 901 37.863 5.502 64.130 1.00 71.88 C HETATM 3 N3 PSU B 901 36.788 4.785 64.591 1.00 70.58 N HETATM 4 C4 PSU B 901 36.354 3.587 64.087 1.00 69.51 C HETATM 5 C5 PSU B 901 37.135 3.098 62.982 1.00 70.62 C HETATM 6 C6 PSU B 901 38.176 3.842 62.574 1.00 73.09 C HETATM 7 O2 PSU B 901 38.207 6.566 64.618 1.00 67.90 O HETATM 8 O4 PSU B 901 35.370 3.026 64.579 1.00 68.09 O HETATM 9 C1' PSU B 901 36.737 1.853 62.292 1.00 73.85 C HETATM 10 C2' PSU B 901 35.363 1.840 61.621 1.00 74.50 C HETATM 11 O2' PSU B 901 34.570 0.784 62.125 1.00 69.04 O HETATM 12 C3' PSU B 901 35.752 1.634 60.167 1.00 75.47 C HETATM 13 C4' PSU B 901 36.948 0.701 60.260 1.00 78.39 C HETATM 14 O3' PSU B 901 34.698 1.092 59.396 1.00 75.83 O HETATM 15 O4' PSU B 901 37.599 1.044 61.511 1.00 76.30 O HETATM 16 C5' PSU B 901 37.932 0.860 59.126 1.00 80.98 C HETATM 17 O5' PSU B 901 38.187 2.259 58.893 1.00 87.45 O HETATM 18 P PSU B 901 39.710 2.837 58.808 1.00 94.05 P HETATM 19 OP1 PSU B 901 40.503 2.057 59.846 1.00 93.43 O HETATM 20 OP2 PSU B 901 39.622 4.319 59.140 1.00 91.12 O HETATM 21 OP3 PSU B 901 40.181 2.576 57.386 1.00 91.33 O