data_1FC8 # _entry.id 1FC8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FC8 pdb_00001fc8 10.2210/pdb1fc8/pdb RCSB RCSB011473 ? ? WWPDB D_1000011473 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-05-30 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FC8 _pdbx_database_status.recvd_initial_deposition_date 2000-07-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trempe, J.-F.' 1 'Gehring, K.' 2 # _citation.id primary _citation.title ;NMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 123 _citation.page_first 4896 _citation.page_last 4903 _citation.year 2001 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11457316 _citation.pdbx_database_id_DOI 10.1021/ja003859p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trempe, J.F.' 1 ? primary 'Wilds, C.J.' 2 ? primary 'Denisov, A.Y.' 3 ? primary 'Pon, R.T.' 4 ? primary 'Damha, M.J.' 5 ? primary 'Gehring, K.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*GP*AP*CP)D(*TP*TP*CP*GP*(GFL)P*(TAF)P*(CFL)P*(CFL))-3'" _entity.formula_weight 3790.341 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;RNA/2'F-ANA HAIRPIN ; # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGAC(DT)(DT)(DC)(DG)(GFL)(TAF)(CFL)(CFL)' _entity_poly.pdbx_seq_one_letter_code_can GGACTTCGGTCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 DT n 1 6 DT n 1 7 DC n 1 8 DG n 1 9 GFL n 1 10 TAF n 1 11 CFL n 1 12 CFL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SOLID PHASE SYNTHESIS; PHOSPHORAMIDITE CHEMISTRY' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CFL 'DNA linking' n '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one' "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 'C9 H13 F N3 O7 P' 325.188 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GFL 'DNA linking' n '2-AMINO-9-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE' "2'-FLUORO-2-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H13 F N5 O7 P' 365.212 TAF 'DNA linking' n ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE ; ? 'C10 H14 F N2 O8 P' 340.199 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 GFL 9 9 9 GFL +G A . n A 1 10 TAF 10 10 10 TAF +T A . n A 1 11 CFL 11 11 11 CFL +C A . n A 1 12 CFL 12 12 12 CFL +C A . n # _cell.entry_id 1FC8 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FC8 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1FC8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1FC8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1FC8 _struct.title ;NMR SOLUTION STRUCTURE OF A CHIMERIC OLIGONUCLEOTIDE HAIRPIN R(GGAC)D(TTCG)2'F-A(GTCC) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FC8 _struct_keywords.pdbx_keywords 'RNA/DNA CHIMERA' _struct_keywords.text ;2'F-ARABINONUCLEIC ACID, RNA, DNA, HYBRID DUPLEX, HAIRPIN, RNA-DNA CHIMERA COMPLEX ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1FC8 _struct_ref.pdbx_db_accession 1FC8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1FC8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1FC8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 8 "O3'" ? ? ? 1_555 A GFL 9 P ? ? A DG 8 A GFL 9 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale2 covale one ? A GFL 9 "O3'" ? ? ? 1_555 A TAF 10 P ? ? A GFL 9 A TAF 10 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale3 covale one ? A TAF 10 "O3'" ? ? ? 1_555 A CFL 11 P ? ? A TAF 10 A CFL 11 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale4 covale one ? A CFL 11 "O3'" ? ? ? 1_555 A CFL 12 P ? ? A CFL 11 A CFL 12 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A CFL 12 N3 ? ? A G 1 A CFL 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A CFL 12 O2 ? ? A G 1 A CFL 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A CFL 12 N4 ? ? A G 1 A CFL 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A CFL 11 N3 ? ? A G 2 A CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A CFL 11 O2 ? ? A G 2 A CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A CFL 11 N4 ? ? A G 2 A CFL 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A TAF 10 N3 ? ? A A 3 A TAF 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A TAF 10 O4 ? ? A A 3 A TAF 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A GFL 9 N1 ? ? A C 4 A GFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A GFL 9 O6 ? ? A C 4 A GFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A GFL 9 N2 ? ? A C 4 A GFL 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O2 ? ? ? 1_555 A GFL 9 N1 ? ? A DT 5 A GFL 9 1_555 ? ? ? ? ? ? 'DT-GFL MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "HO2'" A C 4 ? ? "O4'" A DT 5 ? ? 1.56 2 3 O2 A DT 6 ? ? H22 A DG 8 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.82 113.10 4.72 0.50 N 2 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.88 106.40 -2.52 0.40 N 3 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.81 113.10 4.71 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.68 106.40 -2.72 0.40 N 5 1 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.48 113.80 3.68 0.50 N 6 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.53 108.30 2.23 0.30 N 7 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.54 108.30 2.24 0.30 N 8 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.49 108.30 2.19 0.30 N 9 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 118.06 113.10 4.96 0.50 N 10 2 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.78 113.10 4.68 0.50 N 11 2 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.94 106.40 -2.46 0.40 N 12 2 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.86 113.10 4.76 0.50 N 13 2 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.78 106.40 -2.62 0.40 N 14 2 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.56 113.80 3.76 0.50 N 15 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.31 108.30 2.01 0.30 N 16 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.90 108.30 2.60 0.30 N 17 2 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 118.03 113.10 4.93 0.50 N 18 3 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.77 113.10 4.67 0.50 N 19 3 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.88 106.40 -2.52 0.40 N 20 3 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.69 113.10 4.59 0.50 N 21 3 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.72 106.40 -2.68 0.40 N 22 3 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.54 113.80 3.74 0.50 N 23 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.01 108.30 2.71 0.30 N 24 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.94 108.30 2.64 0.30 N 25 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.69 108.30 2.39 0.30 N 26 3 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.98 113.10 4.88 0.50 N 27 3 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.93 106.40 -2.47 0.40 N 28 4 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.80 113.10 4.70 0.50 N 29 4 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.86 106.40 -2.54 0.40 N 30 4 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.73 113.10 4.63 0.50 N 31 4 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.70 106.40 -2.70 0.40 N 32 4 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.47 113.80 3.67 0.50 N 33 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.27 108.30 1.97 0.30 N 34 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.18 108.30 2.88 0.30 N 35 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.47 108.30 3.17 0.30 N 36 4 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.93 113.10 4.83 0.50 N 37 5 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.66 113.10 4.56 0.50 N 38 5 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.90 106.40 -2.50 0.40 N 39 5 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.63 113.10 4.53 0.50 N 40 5 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.73 106.40 -2.67 0.40 N 41 5 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.56 113.80 3.76 0.50 N 42 5 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 112.71 108.50 4.21 0.70 N 43 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.31 108.30 2.01 0.30 N 44 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.19 108.30 1.89 0.30 N 45 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.74 108.30 2.44 0.30 N 46 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.45 108.30 3.15 0.30 N 47 5 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.77 113.10 4.67 0.50 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GFL 9 A GFL 9 ? DG ? 2 A TAF 10 A TAF 10 ? DT ? 3 A CFL 11 A CFL 11 ? DC ? 4 A CFL 12 A CFL 12 ? DC ? # _pdbx_nmr_ensemble.entry_id 1FC8 _pdbx_nmr_ensemble.conformers_calculated_total_number 5 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'RMSD FROM AVERAGE LOWER THAN 0.7 ANGSTROM' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1FC8 _pdbx_nmr_representative.conformer_id 3 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;0.5 mM Oligonucleotide hairpin; 90% H2O, 10% D2O ; '90% H2O/10% D2O' 2 ;0.5 mM Oligonucleotide hairpin; D2O ; D2O # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.066 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D NOESY' 2 3 1 DQF-COSY 2 4 1 '2D 1H-13C HMQC' 2 5 1 '2D 1H-31P HETCOR' 2 6 1 '2D 1H-19F HETCOR' 2 # _pdbx_nmr_details.entry_id 1FC8 _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 1FC8 _pdbx_nmr_refine.method ;Distance geometry, simulated annealing ; _pdbx_nmr_refine.details ;SA at 15000K for 15 psec from random coordinates. Refinement from lower energy structure at 3000K fro 9 psec. 5 structures generated. Total of 305 restraints: 98 intraresidue NOE-derived distance constraints, 94 sequential NOE-derived distance constraints, 3 long range NOE-derived distance constraints, 15 distance restraints from hydrogen bonds, 91 dihedral angle restraints, 4 planarity constraints for base pairs ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' X-PLOR 3.843 BRUNGER 1 refinement X-PLOR 3.843 BRUNGER 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CFL O3P O N N 73 CFL P P N N 74 CFL O1P O N N 75 CFL O2P O N N 76 CFL "O5'" O N N 77 CFL "C5'" C N N 78 CFL "C4'" C N R 79 CFL "O4'" O N N 80 CFL "C3'" C N R 81 CFL "O3'" O N N 82 CFL "C2'" C N S 83 CFL "C1'" C N R 84 CFL N1 N N N 85 CFL C2 C N N 86 CFL O2 O N N 87 CFL N3 N N N 88 CFL C4 C N N 89 CFL N4 N N N 90 CFL C5 C N N 91 CFL C6 C N N 92 CFL F F N N 93 CFL HO3P H N N 94 CFL HO1P H N N 95 CFL "H5'1" H N N 96 CFL "H5'2" H N N 97 CFL "H4'" H N N 98 CFL "H3'" H N N 99 CFL "HO3'" H N N 100 CFL "H2'" H N N 101 CFL "H1'" H N N 102 CFL HN41 H N N 103 CFL HN42 H N N 104 CFL H5 H N N 105 CFL H6 H N N 106 DC OP3 O N N 107 DC P P N N 108 DC OP1 O N N 109 DC OP2 O N N 110 DC "O5'" O N N 111 DC "C5'" C N N 112 DC "C4'" C N R 113 DC "O4'" O N N 114 DC "C3'" C N S 115 DC "O3'" O N N 116 DC "C2'" C N N 117 DC "C1'" C N R 118 DC N1 N N N 119 DC C2 C N N 120 DC O2 O N N 121 DC N3 N N N 122 DC C4 C N N 123 DC N4 N N N 124 DC C5 C N N 125 DC C6 C N N 126 DC HOP3 H N N 127 DC HOP2 H N N 128 DC "H5'" H N N 129 DC "H5''" H N N 130 DC "H4'" H N N 131 DC "H3'" H N N 132 DC "HO3'" H N N 133 DC "H2'" H N N 134 DC "H2''" H N N 135 DC "H1'" H N N 136 DC H41 H N N 137 DC H42 H N N 138 DC H5 H N N 139 DC H6 H N N 140 DG OP3 O N N 141 DG P P N N 142 DG OP1 O N N 143 DG OP2 O N N 144 DG "O5'" O N N 145 DG "C5'" C N N 146 DG "C4'" C N R 147 DG "O4'" O N N 148 DG "C3'" C N S 149 DG "O3'" O N N 150 DG "C2'" C N N 151 DG "C1'" C N R 152 DG N9 N Y N 153 DG C8 C Y N 154 DG N7 N Y N 155 DG C5 C Y N 156 DG C6 C N N 157 DG O6 O N N 158 DG N1 N N N 159 DG C2 C N N 160 DG N2 N N N 161 DG N3 N N N 162 DG C4 C Y N 163 DG HOP3 H N N 164 DG HOP2 H N N 165 DG "H5'" H N N 166 DG "H5''" H N N 167 DG "H4'" H N N 168 DG "H3'" H N N 169 DG "HO3'" H N N 170 DG "H2'" H N N 171 DG "H2''" H N N 172 DG "H1'" H N N 173 DG H8 H N N 174 DG H1 H N N 175 DG H21 H N N 176 DG H22 H N N 177 DT OP3 O N N 178 DT P P N N 179 DT OP1 O N N 180 DT OP2 O N N 181 DT "O5'" O N N 182 DT "C5'" C N N 183 DT "C4'" C N R 184 DT "O4'" O N N 185 DT "C3'" C N S 186 DT "O3'" O N N 187 DT "C2'" C N N 188 DT "C1'" C N R 189 DT N1 N N N 190 DT C2 C N N 191 DT O2 O N N 192 DT N3 N N N 193 DT C4 C N N 194 DT O4 O N N 195 DT C5 C N N 196 DT C7 C N N 197 DT C6 C N N 198 DT HOP3 H N N 199 DT HOP2 H N N 200 DT "H5'" H N N 201 DT "H5''" H N N 202 DT "H4'" H N N 203 DT "H3'" H N N 204 DT "HO3'" H N N 205 DT "H2'" H N N 206 DT "H2''" H N N 207 DT "H1'" H N N 208 DT H3 H N N 209 DT H71 H N N 210 DT H72 H N N 211 DT H73 H N N 212 DT H6 H N N 213 G OP3 O N N 214 G P P N N 215 G OP1 O N N 216 G OP2 O N N 217 G "O5'" O N N 218 G "C5'" C N N 219 G "C4'" C N R 220 G "O4'" O N N 221 G "C3'" C N S 222 G "O3'" O N N 223 G "C2'" C N R 224 G "O2'" O N N 225 G "C1'" C N R 226 G N9 N Y N 227 G C8 C Y N 228 G N7 N Y N 229 G C5 C Y N 230 G C6 C N N 231 G O6 O N N 232 G N1 N N N 233 G C2 C N N 234 G N2 N N N 235 G N3 N N N 236 G C4 C Y N 237 G HOP3 H N N 238 G HOP2 H N N 239 G "H5'" H N N 240 G "H5''" H N N 241 G "H4'" H N N 242 G "H3'" H N N 243 G "HO3'" H N N 244 G "H2'" H N N 245 G "HO2'" H N N 246 G "H1'" H N N 247 G H8 H N N 248 G H1 H N N 249 G H21 H N N 250 G H22 H N N 251 GFL O3P O N N 252 GFL P P N N 253 GFL O1P O N N 254 GFL O2P O N N 255 GFL "O5'" O N N 256 GFL "C5'" C N N 257 GFL "C4'" C N R 258 GFL "O4'" O N N 259 GFL "C3'" C N R 260 GFL "O3'" O N N 261 GFL "C2'" C N S 262 GFL "C1'" C N R 263 GFL N9 N Y N 264 GFL C8 C Y N 265 GFL N7 N Y N 266 GFL C5 C Y N 267 GFL C6 C N N 268 GFL O6 O N N 269 GFL N1 N N N 270 GFL C2 C N N 271 GFL N2 N N N 272 GFL N3 N N N 273 GFL C4 C Y N 274 GFL F F N N 275 GFL HO3P H N N 276 GFL HO2P H N N 277 GFL "H5'1" H N N 278 GFL "H5'2" H N N 279 GFL "H4'" H N N 280 GFL "H3'" H N N 281 GFL "HO3'" H N N 282 GFL "H2'" H N N 283 GFL "H1'" H N N 284 GFL H8 H N N 285 GFL HN1 H N N 286 GFL HN21 H N N 287 GFL HN22 H N N 288 TAF P P N N 289 TAF OP1 O N N 290 TAF OP2 O N N 291 TAF OP3 O N N 292 TAF "O5'" O N N 293 TAF N1 N N N 294 TAF C6 C N N 295 TAF C2 C N N 296 TAF O2 O N N 297 TAF N3 N N N 298 TAF C4 C N N 299 TAF O4 O N N 300 TAF C5 C N N 301 TAF C5M C N N 302 TAF "F2'" F N N 303 TAF "C2'" C N S 304 TAF "C5'" C N N 305 TAF "C4'" C N R 306 TAF "O4'" O N N 307 TAF "C1'" C N R 308 TAF "C3'" C N R 309 TAF "O3'" O N N 310 TAF HOP1 H N N 311 TAF HOP2 H N N 312 TAF H6 H N N 313 TAF H3 H N N 314 TAF H71 H N N 315 TAF H72 H N N 316 TAF H73 H N N 317 TAF "H2'" H N N 318 TAF "H5'" H N N 319 TAF "H5''" H N N 320 TAF "H4'" H N N 321 TAF "H1'" H N N 322 TAF "H3'" H N N 323 TAF "HO'3" H N N 324 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CFL O3P P sing N N 76 CFL O3P HO3P sing N N 77 CFL P O1P sing N N 78 CFL P O2P doub N N 79 CFL P "O5'" sing N N 80 CFL O1P HO1P sing N N 81 CFL "O5'" "C5'" sing N N 82 CFL "C5'" "C4'" sing N N 83 CFL "C5'" "H5'1" sing N N 84 CFL "C5'" "H5'2" sing N N 85 CFL "C4'" "O4'" sing N N 86 CFL "C4'" "C3'" sing N N 87 CFL "C4'" "H4'" sing N N 88 CFL "O4'" "C1'" sing N N 89 CFL "C3'" "O3'" sing N N 90 CFL "C3'" "C2'" sing N N 91 CFL "C3'" "H3'" sing N N 92 CFL "O3'" "HO3'" sing N N 93 CFL "C2'" "C1'" sing N N 94 CFL "C2'" F sing N N 95 CFL "C2'" "H2'" sing N N 96 CFL "C1'" N1 sing N N 97 CFL "C1'" "H1'" sing N N 98 CFL N1 C2 sing N N 99 CFL N1 C6 sing N N 100 CFL C2 O2 doub N N 101 CFL C2 N3 sing N N 102 CFL N3 C4 doub N N 103 CFL C4 N4 sing N N 104 CFL C4 C5 sing N N 105 CFL N4 HN41 sing N N 106 CFL N4 HN42 sing N N 107 CFL C5 C6 doub N N 108 CFL C5 H5 sing N N 109 CFL C6 H6 sing N N 110 DC OP3 P sing N N 111 DC OP3 HOP3 sing N N 112 DC P OP1 doub N N 113 DC P OP2 sing N N 114 DC P "O5'" sing N N 115 DC OP2 HOP2 sing N N 116 DC "O5'" "C5'" sing N N 117 DC "C5'" "C4'" sing N N 118 DC "C5'" "H5'" sing N N 119 DC "C5'" "H5''" sing N N 120 DC "C4'" "O4'" sing N N 121 DC "C4'" "C3'" sing N N 122 DC "C4'" "H4'" sing N N 123 DC "O4'" "C1'" sing N N 124 DC "C3'" "O3'" sing N N 125 DC "C3'" "C2'" sing N N 126 DC "C3'" "H3'" sing N N 127 DC "O3'" "HO3'" sing N N 128 DC "C2'" "C1'" sing N N 129 DC "C2'" "H2'" sing N N 130 DC "C2'" "H2''" sing N N 131 DC "C1'" N1 sing N N 132 DC "C1'" "H1'" sing N N 133 DC N1 C2 sing N N 134 DC N1 C6 sing N N 135 DC C2 O2 doub N N 136 DC C2 N3 sing N N 137 DC N3 C4 doub N N 138 DC C4 N4 sing N N 139 DC C4 C5 sing N N 140 DC N4 H41 sing N N 141 DC N4 H42 sing N N 142 DC C5 C6 doub N N 143 DC C5 H5 sing N N 144 DC C6 H6 sing N N 145 DG OP3 P sing N N 146 DG OP3 HOP3 sing N N 147 DG P OP1 doub N N 148 DG P OP2 sing N N 149 DG P "O5'" sing N N 150 DG OP2 HOP2 sing N N 151 DG "O5'" "C5'" sing N N 152 DG "C5'" "C4'" sing N N 153 DG "C5'" "H5'" sing N N 154 DG "C5'" "H5''" sing N N 155 DG "C4'" "O4'" sing N N 156 DG "C4'" "C3'" sing N N 157 DG "C4'" "H4'" sing N N 158 DG "O4'" "C1'" sing N N 159 DG "C3'" "O3'" sing N N 160 DG "C3'" "C2'" sing N N 161 DG "C3'" "H3'" sing N N 162 DG "O3'" "HO3'" sing N N 163 DG "C2'" "C1'" sing N N 164 DG "C2'" "H2'" sing N N 165 DG "C2'" "H2''" sing N N 166 DG "C1'" N9 sing N N 167 DG "C1'" "H1'" sing N N 168 DG N9 C8 sing Y N 169 DG N9 C4 sing Y N 170 DG C8 N7 doub Y N 171 DG C8 H8 sing N N 172 DG N7 C5 sing Y N 173 DG C5 C6 sing N N 174 DG C5 C4 doub Y N 175 DG C6 O6 doub N N 176 DG C6 N1 sing N N 177 DG N1 C2 sing N N 178 DG N1 H1 sing N N 179 DG C2 N2 sing N N 180 DG C2 N3 doub N N 181 DG N2 H21 sing N N 182 DG N2 H22 sing N N 183 DG N3 C4 sing N N 184 DT OP3 P sing N N 185 DT OP3 HOP3 sing N N 186 DT P OP1 doub N N 187 DT P OP2 sing N N 188 DT P "O5'" sing N N 189 DT OP2 HOP2 sing N N 190 DT "O5'" "C5'" sing N N 191 DT "C5'" "C4'" sing N N 192 DT "C5'" "H5'" sing N N 193 DT "C5'" "H5''" sing N N 194 DT "C4'" "O4'" sing N N 195 DT "C4'" "C3'" sing N N 196 DT "C4'" "H4'" sing N N 197 DT "O4'" "C1'" sing N N 198 DT "C3'" "O3'" sing N N 199 DT "C3'" "C2'" sing N N 200 DT "C3'" "H3'" sing N N 201 DT "O3'" "HO3'" sing N N 202 DT "C2'" "C1'" sing N N 203 DT "C2'" "H2'" sing N N 204 DT "C2'" "H2''" sing N N 205 DT "C1'" N1 sing N N 206 DT "C1'" "H1'" sing N N 207 DT N1 C2 sing N N 208 DT N1 C6 sing N N 209 DT C2 O2 doub N N 210 DT C2 N3 sing N N 211 DT N3 C4 sing N N 212 DT N3 H3 sing N N 213 DT C4 O4 doub N N 214 DT C4 C5 sing N N 215 DT C5 C7 sing N N 216 DT C5 C6 doub N N 217 DT C7 H71 sing N N 218 DT C7 H72 sing N N 219 DT C7 H73 sing N N 220 DT C6 H6 sing N N 221 G OP3 P sing N N 222 G OP3 HOP3 sing N N 223 G P OP1 doub N N 224 G P OP2 sing N N 225 G P "O5'" sing N N 226 G OP2 HOP2 sing N N 227 G "O5'" "C5'" sing N N 228 G "C5'" "C4'" sing N N 229 G "C5'" "H5'" sing N N 230 G "C5'" "H5''" sing N N 231 G "C4'" "O4'" sing N N 232 G "C4'" "C3'" sing N N 233 G "C4'" "H4'" sing N N 234 G "O4'" "C1'" sing N N 235 G "C3'" "O3'" sing N N 236 G "C3'" "C2'" sing N N 237 G "C3'" "H3'" sing N N 238 G "O3'" "HO3'" sing N N 239 G "C2'" "O2'" sing N N 240 G "C2'" "C1'" sing N N 241 G "C2'" "H2'" sing N N 242 G "O2'" "HO2'" sing N N 243 G "C1'" N9 sing N N 244 G "C1'" "H1'" sing N N 245 G N9 C8 sing Y N 246 G N9 C4 sing Y N 247 G C8 N7 doub Y N 248 G C8 H8 sing N N 249 G N7 C5 sing Y N 250 G C5 C6 sing N N 251 G C5 C4 doub Y N 252 G C6 O6 doub N N 253 G C6 N1 sing N N 254 G N1 C2 sing N N 255 G N1 H1 sing N N 256 G C2 N2 sing N N 257 G C2 N3 doub N N 258 G N2 H21 sing N N 259 G N2 H22 sing N N 260 G N3 C4 sing N N 261 GFL O3P P sing N N 262 GFL O3P HO3P sing N N 263 GFL P O1P doub N N 264 GFL P O2P sing N N 265 GFL P "O5'" sing N N 266 GFL O2P HO2P sing N N 267 GFL "O5'" "C5'" sing N N 268 GFL "C5'" "C4'" sing N N 269 GFL "C5'" "H5'1" sing N N 270 GFL "C5'" "H5'2" sing N N 271 GFL "C4'" "O4'" sing N N 272 GFL "C4'" "C3'" sing N N 273 GFL "C4'" "H4'" sing N N 274 GFL "O4'" "C1'" sing N N 275 GFL "C3'" "O3'" sing N N 276 GFL "C3'" "C2'" sing N N 277 GFL "C3'" "H3'" sing N N 278 GFL "O3'" "HO3'" sing N N 279 GFL "C2'" "C1'" sing N N 280 GFL "C2'" F sing N N 281 GFL "C2'" "H2'" sing N N 282 GFL "C1'" N9 sing N N 283 GFL "C1'" "H1'" sing N N 284 GFL N9 C8 sing Y N 285 GFL N9 C4 sing Y N 286 GFL C8 N7 doub Y N 287 GFL C8 H8 sing N N 288 GFL N7 C5 sing Y N 289 GFL C5 C6 sing N N 290 GFL C5 C4 doub Y N 291 GFL C6 O6 doub N N 292 GFL C6 N1 sing N N 293 GFL N1 C2 sing N N 294 GFL N1 HN1 sing N N 295 GFL C2 N2 sing N N 296 GFL C2 N3 doub N N 297 GFL N2 HN21 sing N N 298 GFL N2 HN22 sing N N 299 GFL N3 C4 sing N N 300 TAF P OP1 sing N N 301 TAF P OP2 sing N N 302 TAF P OP3 doub N N 303 TAF P "O5'" sing N N 304 TAF OP1 HOP1 sing N N 305 TAF OP2 HOP2 sing N N 306 TAF "O5'" "C5'" sing N N 307 TAF N1 C6 sing N N 308 TAF N1 C2 sing N N 309 TAF N1 "C1'" sing N N 310 TAF C6 C5 doub N N 311 TAF C6 H6 sing N N 312 TAF C2 O2 doub N N 313 TAF C2 N3 sing N N 314 TAF N3 C4 sing N N 315 TAF N3 H3 sing N N 316 TAF C4 O4 doub N N 317 TAF C4 C5 sing N N 318 TAF C5 C5M sing N N 319 TAF C5M H71 sing N N 320 TAF C5M H72 sing N N 321 TAF C5M H73 sing N N 322 TAF "F2'" "C2'" sing N N 323 TAF "C2'" "C1'" sing N N 324 TAF "C2'" "C3'" sing N N 325 TAF "C2'" "H2'" sing N N 326 TAF "C5'" "C4'" sing N N 327 TAF "C5'" "H5'" sing N N 328 TAF "C5'" "H5''" sing N N 329 TAF "C4'" "O4'" sing N N 330 TAF "C4'" "C3'" sing N N 331 TAF "C4'" "H4'" sing N N 332 TAF "O4'" "C1'" sing N N 333 TAF "C1'" "H1'" sing N N 334 TAF "C3'" "O3'" sing N N 335 TAF "C3'" "H3'" sing N N 336 TAF "O3'" "HO'3" sing N N 337 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1FC8 'double helix' 1FC8 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A CFL 12 1_555 -0.396 -0.303 0.080 -4.075 -4.793 -1.939 1 A_G1:CFL12_A A 1 ? A 12 ? 19 1 1 A G 2 1_555 A CFL 11 1_555 -1.075 -0.507 -0.446 1.420 -9.232 3.196 2 A_G2:CFL11_A A 2 ? A 11 ? 19 1 1 A A 3 1_555 A TAF 10 1_555 -0.051 -0.320 -0.723 10.512 -2.561 3.408 3 A_A3:TAF10_A A 3 ? A 10 ? 20 1 1 A C 4 1_555 A GFL 9 1_555 0.717 -0.254 -0.343 14.008 0.533 3.096 4 A_C4:GFL9_A A 4 ? A 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A CFL 12 1_555 A G 2 1_555 A CFL 11 1_555 0.592 -1.230 3.480 4.064 -2.066 32.379 -1.797 -0.288 3.595 -3.683 -7.243 32.689 1 AA_G1G2:CFL11CFL12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A G 2 1_555 A CFL 11 1_555 A A 3 1_555 A TAF 10 1_555 0.764 -0.733 3.147 -0.796 8.650 36.849 -2.172 -1.275 2.891 13.456 1.239 37.824 2 AA_G2A3:TAF10CFL11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A A 3 1_555 A TAF 10 1_555 A C 4 1_555 A GFL 9 1_555 0.800 -1.741 3.546 -0.908 3.661 33.430 -3.638 -1.539 3.320 6.339 1.572 33.636 3 AA_A3C4:GFL9TAF10_AA A 3 ? A 10 ? A 4 ? A 9 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DMX Bruker 400 ? 3 UNITYPLUS Varian 750 ? # _atom_sites.entry_id 1FC8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H N O P # loop_