HEADER HYDROLASE 18-JUL-00 1FCF TITLE PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOSYSTEM II D1 PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 77-464; COMPND 5 SYNONYM: D1 C-TERMINAL PROCESSING PROTEASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCENEDESMUS OBLIQUUS; SOURCE 3 ORGANISM_TAXID: 3088; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-32(A)-D1P(+AM) KEYWDS D1 C-TERMINAL PROCESSING PROTEASE, SERINE PROTEASE, SERINE-LYSINE KEYWDS 2 CATALYTIC DYAD, PDZ DOMAIN, PHOTOSYSTEM II, PHOTOSYNTHESIS, X-RAY KEYWDS 3 CRYSTAL STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.I.LIAO,J.QIAN,D.A.CHISHOLM,D.B.JORDAN,B.A.DINER REVDAT 5 10-OCT-18 1FCF 1 COMPND SOURCE REVDAT 4 03-OCT-18 1FCF 1 REMARK REVDAT 3 13-JUL-11 1FCF 1 VERSN REVDAT 2 24-FEB-09 1FCF 1 VERSN REVDAT 1 18-JAN-01 1FCF 0 JRNL AUTH D.I.LIAO,J.QIAN,D.A.CHISHOLM,D.B.JORDAN,B.A.DINER JRNL TITL CRYSTAL STRUCTURES OF THE PHOTOSYSTEM II D1 C-TERMINAL JRNL TITL 2 PROCESSING PROTEASE. JRNL REF NAT.STRUCT.BIOL. V. 7 749 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 10966643 JRNL DOI 10.1038/78973 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25195 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2544 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 25542 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.015 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.700 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT LIBRARY, BOND LENGTHS 0.02 BOND ANGLES 3.0 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1000011475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 102 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, LITHIUM SULFATE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 74.37650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.94129 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.39100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 74.37650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.94129 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.39100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 74.37650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.94129 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 33.39100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 74.37650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.94129 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.39100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 74.37650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.94129 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.39100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 74.37650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.94129 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.39100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.88258 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.78200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 85.88258 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.78200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 85.88258 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 66.78200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 85.88258 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.78200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 85.88258 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 66.78200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 85.88258 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 66.78200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 148.75300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 74.37650 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 128.82388 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 505 O HOH A 556 2.17 REMARK 500 O HOH A 503 O HOH A 596 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 513 O HOH A 513 5555 1.84 REMARK 500 OD1 ASP A 439 OD1 ASP A 439 10545 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 87 CD GLU A 87 OE2 0.069 REMARK 500 GLU A 111 CD GLU A 111 OE2 0.066 REMARK 500 GLU A 166 CD GLU A 166 OE2 0.093 REMARK 500 GLU A 222 CD GLU A 222 OE2 0.089 REMARK 500 GLU A 228 CD GLU A 228 OE2 0.076 REMARK 500 GLU A 392 CD GLU A 392 OE2 0.068 REMARK 500 GLU A 441 CD GLU A 441 OE2 0.127 REMARK 500 GLU A 448 CD GLU A 448 OE2 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 127 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 217 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 217 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 224 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 PRO A 270 C - N - CD ANGL. DEV. = -20.9 DEGREES REMARK 500 ARG A 281 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 281 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 311 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 332 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 335 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 346 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 357 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 368 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 383 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 386 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 386 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 393 CG - CD - NE ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 405 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 405 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 408 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 408 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 VAL A 414 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG A 418 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 418 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 426 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 439 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 439 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 461 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 99 15.18 -67.30 REMARK 500 ASN A 102 27.81 44.76 REMARK 500 LEU A 149 13.59 -68.81 REMARK 500 ARG A 154 127.07 -172.81 REMARK 500 THR A 156 -2.87 178.70 REMARK 500 SER A 159 2.61 -39.17 REMARK 500 ASP A 170 174.32 -56.10 REMARK 500 LYS A 190 14.29 -58.14 REMARK 500 ASP A 224 2.59 89.56 REMARK 500 ALA A 236 70.07 -113.75 REMARK 500 ASN A 239 74.49 -53.36 REMARK 500 PRO A 269 175.74 -53.09 REMARK 500 ALA A 273 39.75 -99.30 REMARK 500 LYS A 274 133.58 162.29 REMARK 500 GLN A 275 47.87 -83.20 REMARK 500 ASN A 314 49.77 39.11 REMARK 500 SER A 372 -119.23 57.60 REMARK 500 LYS A 429 -75.48 -67.43 REMARK 500 PRO A 440 -29.41 -26.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 466 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FC6 RELATED DB: PDB REMARK 900 STRUCTURE OF SELENO-MET DERIVATIVE OF L132M/L210M MUTANT REMARK 900 RELATED ID: 1FC7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME ENZYME IN DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 1FC9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME ENZYME IN DIFFERENT CRYSTAL FORM DBREF 1FCF A 78 464 UNP O04073 O04073_SCEOB 78 464 SEQADV 1FCF MET A 77 UNP O04073 INITIATING METHIONINE SEQRES 1 A 388 MET VAL THR SER GLU GLN LEU LEU PHE LEU GLU ALA TRP SEQRES 2 A 388 ARG ALA VAL ASP ARG ALA TYR VAL ASP LYS SER PHE ASN SEQRES 3 A 388 GLY GLN SER TRP PHE LYS LEU ARG GLU THR TYR LEU LYS SEQRES 4 A 388 LYS GLU PRO MET ASP ARG ARG ALA GLN THR TYR ASP ALA SEQRES 5 A 388 ILE ARG LYS LEU LEU ALA VAL LEU ASP ASP PRO PHE THR SEQRES 6 A 388 ARG PHE LEU GLU PRO SER ARG LEU ALA ALA LEU ARG ARG SEQRES 7 A 388 GLY THR ALA GLY SER VAL THR GLY VAL GLY LEU GLU ILE SEQRES 8 A 388 THR TYR ASP GLY GLY SER GLY LYS ASP VAL VAL VAL LEU SEQRES 9 A 388 THR PRO ALA PRO GLY GLY PRO ALA GLU LYS ALA GLY ALA SEQRES 10 A 388 ARG ALA GLY ASP VAL ILE VAL THR VAL ASP GLY THR ALA SEQRES 11 A 388 VAL LYS GLY LEU SER LEU TYR ASP VAL SER ASP LEU LEU SEQRES 12 A 388 GLN GLY GLU ALA ASP SER GLN VAL GLU VAL VAL LEU HIS SEQRES 13 A 388 ALA PRO GLY ALA PRO SER ASN THR ARG THR LEU GLN LEU SEQRES 14 A 388 THR ARG GLN LYS VAL THR ILE ASN PRO VAL THR PHE THR SEQRES 15 A 388 THR CYS SER ASN VAL ALA ALA ALA ALA LEU PRO PRO GLY SEQRES 16 A 388 ALA ALA LYS GLN GLN LEU GLY TYR VAL ARG LEU ALA THR SEQRES 17 A 388 PHE ASN SER ASN THR THR ALA ALA ALA GLN GLN ALA PHE SEQRES 18 A 388 THR GLU LEU SER LYS GLN GLY VAL ALA GLY LEU VAL LEU SEQRES 19 A 388 ASP ILE ARG ASN ASN GLY GLY GLY LEU PHE PRO ALA GLY SEQRES 20 A 388 VAL ASN VAL ALA ARG MET LEU VAL ASP ARG GLY ASP LEU SEQRES 21 A 388 VAL LEU ILE ALA ASP SER GLN GLY ILE ARG ASP ILE TYR SEQRES 22 A 388 SER ALA ASP GLY ASN SER ILE ASP SER ALA THR PRO LEU SEQRES 23 A 388 VAL VAL LEU VAL ASN ARG GLY THR ALA SER ALA SER GLU SEQRES 24 A 388 VAL LEU ALA GLY ALA LEU LYS ASP SER LYS ARG GLY LEU SEQRES 25 A 388 ILE ALA GLY GLU ARG THR PHE GLY LYS GLY LEU ILE GLN SEQRES 26 A 388 THR VAL VAL ASP LEU SER ASP GLY SER GLY VAL ALA VAL SEQRES 27 A 388 THR VAL ALA ARG TYR GLN THR PRO ALA GLY VAL ASP ILE SEQRES 28 A 388 ASN LYS ILE GLY VAL SER PRO ASP VAL GLN LEU ASP PRO SEQRES 29 A 388 GLU VAL LEU PRO THR ASP LEU GLU GLY VAL CYS ARG VAL SEQRES 30 A 388 LEU GLY SER ASP ALA ALA PRO ARG LEU PHE GLY HET SO4 A 465 5 HET SO4 A 466 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *149(H2 O) HELIX 1 1 THR A 79 TYR A 96 1 18 HELIX 2 2 SER A 100 GLN A 104 5 5 HELIX 3 3 SER A 105 GLU A 117 1 13 HELIX 4 4 ARG A 121 VAL A 135 1 15 HELIX 5 5 SER A 147 LEU A 152 1 6 HELIX 6 6 ALA A 188 GLY A 192 5 5 HELIX 7 7 SER A 211 GLN A 220 1 10 HELIX 8 8 ALA A 264 LEU A 268 5 5 HELIX 9 9 ASN A 288 GLY A 304 1 17 HELIX 10 10 LEU A 319 VAL A 331 1 13 HELIX 11 11 SER A 372 SER A 384 1 13 HELIX 12 12 ASP A 426 GLY A 431 1 6 HELIX 13 13 ASP A 446 SER A 456 1 11 SHEET 1 A 4 GLY A 344 SER A 350 0 SHEET 2 A 4 ASP A 335 ASP A 341 -1 N LEU A 336 O TYR A 349 SHEET 3 A 4 GLY A 411 GLN A 420 -1 O ARG A 418 N ALA A 340 SHEET 4 A 4 ARG A 142 LEU A 144 -1 O ARG A 142 N ALA A 413 SHEET 1 B 4 GLY A 344 SER A 350 0 SHEET 2 B 4 ASP A 335 ASP A 341 -1 N LEU A 336 O TYR A 349 SHEET 3 B 4 GLY A 411 GLN A 420 -1 O ARG A 418 N ALA A 340 SHEET 4 B 4 LEU A 399 ASP A 405 -1 N ILE A 400 O ALA A 417 SHEET 1 C 2 LEU A 165 TYR A 169 0 SHEET 2 C 2 VAL A 177 PRO A 182 -1 N VAL A 178 O THR A 168 SHEET 1 D 4 THR A 205 ALA A 206 0 SHEET 2 D 4 VAL A 198 VAL A 202 -1 N VAL A 202 O THR A 205 SHEET 3 D 4 GLN A 226 HIS A 232 -1 N VAL A 230 O THR A 201 SHEET 4 D 4 THR A 240 THR A 246 -1 O ARG A 241 N LEU A 231 SHEET 1 E 6 VAL A 255 CYS A 260 0 SHEET 2 E 6 LEU A 277 LEU A 282 -1 O LEU A 277 N CYS A 260 SHEET 3 E 6 GLY A 307 ASP A 311 1 O GLY A 307 N GLY A 278 SHEET 4 E 6 LEU A 362 VAL A 366 1 O VAL A 363 N LEU A 310 SHEET 5 E 6 LEU A 388 GLY A 391 1 O LEU A 388 N VAL A 364 SHEET 6 E 6 VAL A 436 GLN A 437 1 N VAL A 436 O ILE A 389 SSBOND 1 CYS A 260 CYS A 451 1555 1555 2.08 SITE 1 AC1 6 ARG A 121 ARG A 122 ALA A 123 PRO A 184 SITE 2 AC1 6 HOH A 474 HOH A 526 SITE 1 AC2 3 ARG A 90 LYS A 108 ARG A 110 CRYST1 148.753 148.753 100.173 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006723 0.003881 0.000000 0.00000 SCALE2 0.000000 0.007762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009983 0.00000