HEADER SIGNALING PROTEIN 18-JUL-00 1FCH TITLE CRYSTAL STRUCTURE OF THE PTS1 COMPLEXED TO THE TPR REGION OF HUMAN TITLE 2 PEX5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL TPR REGION; COMPND 5 SYNONYM: PEROXISMORE RECEPTOR 1, PTS1-BP, PEROXIN-5, PTS1 RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PTS1-CONTAINING PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS PROTEIN-PEPTIDE COMPLEX, TETRATRICOPEPTIDE REPEAT, TPR, HELICAL KEYWDS 2 REPEAT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.J.GATTO JR.,B.V.GEISBRECHT,S.J.GOULD,J.M.BERG REVDAT 3 07-FEB-24 1FCH 1 SEQADV REVDAT 2 24-FEB-09 1FCH 1 VERSN REVDAT 1 06-DEC-00 1FCH 0 JRNL AUTH G.J.GATTO JR.,B.V.GEISBRECHT,S.J.GOULD,J.M.BERG JRNL TITL PEROXISOMAL TARGETING SIGNAL-1 RECOGNITION BY THE TPR JRNL TITL 2 DOMAINS OF HUMAN PEX5. JRNL REF NAT.STRUCT.BIOL. V. 7 1091 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 11101887 JRNL DOI 10.1038/81930 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2170352.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3831 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5666 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 642 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.41000 REMARK 3 B22 (A**2) : 8.07000 REMARK 3 B33 (A**2) : -4.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.220 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 33.56 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1000011476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38298 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM HEPES, SODIUM CITRATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.98000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.98000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 137.96000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 137.96000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 235 REMARK 465 GLU A 236 REMARK 465 PHE A 237 REMARK 465 GLU A 238 REMARK 465 ARG A 239 REMARK 465 ALA A 240 REMARK 465 LYS A 241 REMARK 465 SER A 242 REMARK 465 ALA A 243 REMARK 465 ILE A 244 REMARK 465 GLU A 245 REMARK 465 SER A 246 REMARK 465 ASP A 247 REMARK 465 VAL A 248 REMARK 465 ASP A 249 REMARK 465 PHE A 250 REMARK 465 TRP A 251 REMARK 465 ASP A 252 REMARK 465 LYS A 253 REMARK 465 LEU A 254 REMARK 465 GLN A 255 REMARK 465 ALA A 256 REMARK 465 GLU A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 GLU A 260 REMARK 465 MET A 261 REMARK 465 ALA A 262 REMARK 465 LYS A 263 REMARK 465 ARG A 264 REMARK 465 ASP A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 ALA A 268 REMARK 465 HIS A 269 REMARK 465 PRO A 270 REMARK 465 TRP A 271 REMARK 465 LEU A 272 REMARK 465 SER A 273 REMARK 465 ASP A 274 REMARK 465 TYR A 275 REMARK 465 ASP A 276 REMARK 465 ASP A 277 REMARK 465 LEU A 278 REMARK 465 THR A 279 REMARK 465 PRO A 405 REMARK 465 ALA A 406 REMARK 465 GLU A 407 REMARK 465 GLU A 408 REMARK 465 GLY A 409 REMARK 465 ALA A 410 REMARK 465 GLY A 411 REMARK 465 GLY A 412 REMARK 465 ALA A 413 REMARK 465 GLY A 414 REMARK 465 LEU A 415 REMARK 465 GLY A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 LYS A 419 REMARK 465 ARG A 553 REMARK 465 GLY A 554 REMARK 465 PRO A 555 REMARK 465 ARG A 556 REMARK 465 GLY A 557 REMARK 465 GLU A 558 REMARK 465 MET B 235 REMARK 465 GLU B 236 REMARK 465 PHE B 237 REMARK 465 GLU B 238 REMARK 465 ARG B 239 REMARK 465 ALA B 240 REMARK 465 LYS B 241 REMARK 465 SER B 242 REMARK 465 ALA B 243 REMARK 465 ILE B 244 REMARK 465 GLU B 245 REMARK 465 SER B 246 REMARK 465 ASP B 247 REMARK 465 VAL B 248 REMARK 465 ASP B 249 REMARK 465 PHE B 250 REMARK 465 TRP B 251 REMARK 465 ASP B 252 REMARK 465 LYS B 253 REMARK 465 LEU B 254 REMARK 465 GLN B 255 REMARK 465 ALA B 256 REMARK 465 GLU B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 GLU B 260 REMARK 465 MET B 261 REMARK 465 ALA B 262 REMARK 465 LYS B 263 REMARK 465 ARG B 264 REMARK 465 ASP B 265 REMARK 465 ALA B 266 REMARK 465 GLU B 267 REMARK 465 ALA B 268 REMARK 465 HIS B 269 REMARK 465 PRO B 270 REMARK 465 TRP B 271 REMARK 465 LEU B 272 REMARK 465 SER B 273 REMARK 465 ASP B 274 REMARK 465 TYR B 275 REMARK 465 ASP B 276 REMARK 465 ASP B 277 REMARK 465 LEU B 278 REMARK 465 THR B 279 REMARK 465 SER B 280 REMARK 465 ALA B 281 REMARK 465 THR B 282 REMARK 465 TYR B 283 REMARK 465 ASP B 284 REMARK 465 ALA B 406 REMARK 465 GLU B 407 REMARK 465 GLU B 408 REMARK 465 GLY B 409 REMARK 465 ALA B 410 REMARK 465 GLY B 411 REMARK 465 GLY B 412 REMARK 465 ALA B 413 REMARK 465 GLY B 414 REMARK 465 LEU B 415 REMARK 465 GLY B 416 REMARK 465 PRO B 417 REMARK 465 SER B 418 REMARK 465 LYS B 419 REMARK 465 ARG B 553 REMARK 465 GLY B 554 REMARK 465 PRO B 555 REMARK 465 ARG B 556 REMARK 465 GLY B 557 REMARK 465 GLU B 558 REMARK 465 GLY B 559 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 GLN A 300 CG CD OE1 NE2 REMARK 470 ARG A 383 CG CD NE CZ NH1 NH2 REMARK 470 THR A 404 OG1 CG2 REMARK 470 ARG A 420 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 421 CG1 CG2 CD1 REMARK 470 LEU A 422 CG CD1 CD2 REMARK 470 GLU A 502 CG CD OE1 OE2 REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 GLN B 300 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 285 149.93 -39.68 REMARK 500 ASP A 328 74.52 -163.98 REMARK 500 LEU A 381 77.20 -105.58 REMARK 500 PRO A 397 -58.91 -29.81 REMARK 500 LYS A 551 30.58 -66.82 REMARK 500 GLU B 292 68.50 -106.00 REMARK 500 ASP B 328 86.77 -152.75 REMARK 500 PRO B 329 -4.58 -57.76 REMARK 500 SER B 380 36.83 75.64 REMARK 500 LEU B 381 70.35 -106.27 REMARK 500 GLN B 500 59.36 -110.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 1FCH A 235 602 UNP P50542 PEX5_HUMAN 235 602 DBREF 1FCH B 235 602 UNP P50542 PEX5_HUMAN 235 602 DBREF 1FCH C 1 5 PDB 1FCH 1FCH 1 5 DBREF 1FCH D 1 5 PDB 1FCH 1FCH 1 5 SEQADV 1FCH ILE A 388 UNP P50542 THR 388 CONFLICT SEQADV 1FCH ILE B 388 UNP P50542 THR 388 CONFLICT SEQRES 1 A 368 MET GLU PHE GLU ARG ALA LYS SER ALA ILE GLU SER ASP SEQRES 2 A 368 VAL ASP PHE TRP ASP LYS LEU GLN ALA GLU LEU GLU GLU SEQRES 3 A 368 MET ALA LYS ARG ASP ALA GLU ALA HIS PRO TRP LEU SER SEQRES 4 A 368 ASP TYR ASP ASP LEU THR SER ALA THR TYR ASP LYS GLY SEQRES 5 A 368 TYR GLN PHE GLU GLU GLU ASN PRO LEU ARG ASP HIS PRO SEQRES 6 A 368 GLN PRO PHE GLU GLU GLY LEU ARG ARG LEU GLN GLU GLY SEQRES 7 A 368 ASP LEU PRO ASN ALA VAL LEU LEU PHE GLU ALA ALA VAL SEQRES 8 A 368 GLN GLN ASP PRO LYS HIS MET GLU ALA TRP GLN TYR LEU SEQRES 9 A 368 GLY THR THR GLN ALA GLU ASN GLU GLN GLU LEU LEU ALA SEQRES 10 A 368 ILE SER ALA LEU ARG ARG CYS LEU GLU LEU LYS PRO ASP SEQRES 11 A 368 ASN GLN THR ALA LEU MET ALA LEU ALA VAL SER PHE THR SEQRES 12 A 368 ASN GLU SER LEU GLN ARG GLN ALA CYS GLU ILE LEU ARG SEQRES 13 A 368 ASP TRP LEU ARG TYR THR PRO ALA TYR ALA HIS LEU VAL SEQRES 14 A 368 THR PRO ALA GLU GLU GLY ALA GLY GLY ALA GLY LEU GLY SEQRES 15 A 368 PRO SER LYS ARG ILE LEU GLY SER LEU LEU SER ASP SER SEQRES 16 A 368 LEU PHE LEU GLU VAL LYS GLU LEU PHE LEU ALA ALA VAL SEQRES 17 A 368 ARG LEU ASP PRO THR SER ILE ASP PRO ASP VAL GLN CYS SEQRES 18 A 368 GLY LEU GLY VAL LEU PHE ASN LEU SER GLY GLU TYR ASP SEQRES 19 A 368 LYS ALA VAL ASP CYS PHE THR ALA ALA LEU SER VAL ARG SEQRES 20 A 368 PRO ASN ASP TYR LEU LEU TRP ASN LYS LEU GLY ALA THR SEQRES 21 A 368 LEU ALA ASN GLY ASN GLN SER GLU GLU ALA VAL ALA ALA SEQRES 22 A 368 TYR ARG ARG ALA LEU GLU LEU GLN PRO GLY TYR ILE ARG SEQRES 23 A 368 SER ARG TYR ASN LEU GLY ILE SER CYS ILE ASN LEU GLY SEQRES 24 A 368 ALA HIS ARG GLU ALA VAL GLU HIS PHE LEU GLU ALA LEU SEQRES 25 A 368 ASN MET GLN ARG LYS SER ARG GLY PRO ARG GLY GLU GLY SEQRES 26 A 368 GLY ALA MET SER GLU ASN ILE TRP SER THR LEU ARG LEU SEQRES 27 A 368 ALA LEU SER MET LEU GLY GLN SER ASP ALA TYR GLY ALA SEQRES 28 A 368 ALA ASP ALA ARG ASP LEU SER THR LEU LEU THR MET PHE SEQRES 29 A 368 GLY LEU PRO GLN SEQRES 1 B 368 MET GLU PHE GLU ARG ALA LYS SER ALA ILE GLU SER ASP SEQRES 2 B 368 VAL ASP PHE TRP ASP LYS LEU GLN ALA GLU LEU GLU GLU SEQRES 3 B 368 MET ALA LYS ARG ASP ALA GLU ALA HIS PRO TRP LEU SER SEQRES 4 B 368 ASP TYR ASP ASP LEU THR SER ALA THR TYR ASP LYS GLY SEQRES 5 B 368 TYR GLN PHE GLU GLU GLU ASN PRO LEU ARG ASP HIS PRO SEQRES 6 B 368 GLN PRO PHE GLU GLU GLY LEU ARG ARG LEU GLN GLU GLY SEQRES 7 B 368 ASP LEU PRO ASN ALA VAL LEU LEU PHE GLU ALA ALA VAL SEQRES 8 B 368 GLN GLN ASP PRO LYS HIS MET GLU ALA TRP GLN TYR LEU SEQRES 9 B 368 GLY THR THR GLN ALA GLU ASN GLU GLN GLU LEU LEU ALA SEQRES 10 B 368 ILE SER ALA LEU ARG ARG CYS LEU GLU LEU LYS PRO ASP SEQRES 11 B 368 ASN GLN THR ALA LEU MET ALA LEU ALA VAL SER PHE THR SEQRES 12 B 368 ASN GLU SER LEU GLN ARG GLN ALA CYS GLU ILE LEU ARG SEQRES 13 B 368 ASP TRP LEU ARG TYR THR PRO ALA TYR ALA HIS LEU VAL SEQRES 14 B 368 THR PRO ALA GLU GLU GLY ALA GLY GLY ALA GLY LEU GLY SEQRES 15 B 368 PRO SER LYS ARG ILE LEU GLY SER LEU LEU SER ASP SER SEQRES 16 B 368 LEU PHE LEU GLU VAL LYS GLU LEU PHE LEU ALA ALA VAL SEQRES 17 B 368 ARG LEU ASP PRO THR SER ILE ASP PRO ASP VAL GLN CYS SEQRES 18 B 368 GLY LEU GLY VAL LEU PHE ASN LEU SER GLY GLU TYR ASP SEQRES 19 B 368 LYS ALA VAL ASP CYS PHE THR ALA ALA LEU SER VAL ARG SEQRES 20 B 368 PRO ASN ASP TYR LEU LEU TRP ASN LYS LEU GLY ALA THR SEQRES 21 B 368 LEU ALA ASN GLY ASN GLN SER GLU GLU ALA VAL ALA ALA SEQRES 22 B 368 TYR ARG ARG ALA LEU GLU LEU GLN PRO GLY TYR ILE ARG SEQRES 23 B 368 SER ARG TYR ASN LEU GLY ILE SER CYS ILE ASN LEU GLY SEQRES 24 B 368 ALA HIS ARG GLU ALA VAL GLU HIS PHE LEU GLU ALA LEU SEQRES 25 B 368 ASN MET GLN ARG LYS SER ARG GLY PRO ARG GLY GLU GLY SEQRES 26 B 368 GLY ALA MET SER GLU ASN ILE TRP SER THR LEU ARG LEU SEQRES 27 B 368 ALA LEU SER MET LEU GLY GLN SER ASP ALA TYR GLY ALA SEQRES 28 B 368 ALA ASP ALA ARG ASP LEU SER THR LEU LEU THR MET PHE SEQRES 29 B 368 GLY LEU PRO GLN SEQRES 1 C 5 TYR GLN SER LYS LEU SEQRES 1 D 5 TYR GLN SER LYS LEU FORMUL 5 HOH *241(H2 O) HELIX 1 1 SER A 280 LYS A 285 1 6 HELIX 2 2 GLN A 300 GLU A 311 1 12 HELIX 3 3 ASP A 313 GLN A 327 1 15 HELIX 4 4 HIS A 331 ASN A 345 1 15 HELIX 5 5 GLN A 347 LYS A 362 1 16 HELIX 6 6 ASN A 365 GLU A 379 1 15 HELIX 7 7 LEU A 381 TYR A 395 1 15 HELIX 8 8 TYR A 399 VAL A 403 5 5 HELIX 9 9 LEU A 422 ASP A 445 1 24 HELIX 10 10 ASP A 450 SER A 464 1 15 HELIX 11 11 GLU A 466 ARG A 481 1 16 HELIX 12 12 ASP A 484 GLY A 498 1 15 HELIX 13 13 GLN A 500 GLN A 515 1 16 HELIX 14 14 TYR A 518 GLY A 533 1 16 HELIX 15 15 ALA A 534 LYS A 551 1 18 HELIX 16 16 SER A 563 GLY A 578 1 16 HELIX 17 17 GLN A 579 ASP A 581 5 3 HELIX 18 18 ALA A 582 ALA A 588 1 7 HELIX 19 19 ASP A 590 PHE A 598 1 9 HELIX 20 20 ASN B 293 HIS B 298 5 6 HELIX 21 21 GLN B 300 GLU B 311 1 12 HELIX 22 22 ASP B 313 ASP B 328 1 16 HELIX 23 23 HIS B 331 ASN B 345 1 15 HELIX 24 24 GLN B 347 LYS B 362 1 16 HELIX 25 25 ASN B 365 SER B 380 1 16 HELIX 26 26 LEU B 381 TYR B 395 1 15 HELIX 27 27 TYR B 399 VAL B 403 5 5 HELIX 28 28 LEU B 422 ASP B 445 1 24 HELIX 29 29 ASP B 450 GLY B 465 1 16 HELIX 30 30 GLU B 466 SER B 479 1 14 HELIX 31 31 ASP B 484 GLY B 498 1 15 HELIX 32 32 GLN B 500 GLN B 515 1 16 HELIX 33 33 TYR B 518 LEU B 532 1 15 HELIX 34 34 ALA B 534 LYS B 551 1 18 HELIX 35 35 SER B 563 GLY B 578 1 16 HELIX 36 36 GLN B 579 ASP B 581 5 3 HELIX 37 37 ALA B 582 ARG B 589 1 8 HELIX 38 38 ASP B 590 PHE B 598 1 9 CRYST1 137.960 73.510 87.560 90.00 120.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007248 0.000000 0.004318 0.00000 SCALE2 0.000000 0.013604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013293 0.00000