HEADER ELECTRON TRANSFER(IRON-SULFUR PROTEIN) 08-DEC-88 1FD2 TITLE SITE-DIRECTED MUTAGENESIS OF AZOTOBACTER VINELANDII FERREDOXIN I. (FE- TITLE 2 S) CLUSTER-DRIVEN PROTEIN REARRANGEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII; SOURCE 3 ORGANISM_TAXID: 354 KEYWDS ELECTRON TRANSFER(IRON-SULFUR PROTEIN) EXPDTA X-RAY DIFFRACTION AUTHOR C.D.STOUT REVDAT 7 07-FEB-24 1FD2 1 REMARK SEQADV REVDAT 6 24-MAR-09 1FD2 1 ATOM CONECT REVDAT 5 24-FEB-09 1FD2 1 VERSN REVDAT 4 01-APR-03 1FD2 1 JRNL REVDAT 3 15-OCT-92 1FD2 1 REMARK REVDAT 2 15-OCT-90 1FD2 1 JRNL REMARK REVDAT 1 15-OCT-89 1FD2 0 JRNL AUTH A.E.MARTIN,B.K.BURGESS,C.D.STOUT,V.L.CASH,D.R.DEAN, JRNL AUTH 2 G.M.JENSEN,P.J.STEPHENS JRNL TITL SITE-DIRECTED MUTAGENESIS OF AZOTOBACTER VINELANDII JRNL TITL 2 FERREDOXIN I: [FE-S] CLUSTER-DRIVEN PROTEIN REARRANGEMENT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 87 598 1990 JRNL REFN ISSN 0027-8424 JRNL PMID 2153958 JRNL DOI 10.1073/PNAS.87.2.598 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SOMAN,S.IISMAA,C.D.STOUT REMARK 1 TITL CRYSTALLOGRAPHIC ANALYSIS OF TWO SITE-DIRECTED MUTANTS OF REMARK 1 TITL 2 AZOTOBACTER VINELANDII FERREDOXIN REMARK 1 REF J.BIOL.CHEM. V. 266 21558 1991 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.D.STOUT REMARK 1 TITL REFINEMENT OF THE 7 FE FERREDOXIN FROM AZOTOBACTER AT 1.9 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 205 545 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.D.STOUT REMARK 1 TITL 7-IRON FERREDOXIN REVISITED REMARK 1 REF J.BIOL.CHEM. V. 263 9256 1988 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.J.STEPHENS,T.V.MORGAN,F.DEVLIN,J.E.PENNER-HAHN, REMARK 1 AUTH 2 K.O.HODGSON,R.A.SCOTT,C.D.STOUT,B.K.BURGESS REMARK 1 TITL (4FE-4S)-CLUSTER-DEPLETED AZOTOBACTER VINELANDII FERREDOXIN REMARK 1 TITL 2 I. A NEW 3FE IRON-SULFUR PROTEIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 82 5661 1985 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.B.HOWARD,T.W.LORSBACH,D.GHOSH,K.MELIS,C.D.STOUT REMARK 1 TITL STRUCTURE OF AZOTOBACTER VINELANDII 7FE FERREDOXIN. AMINO REMARK 1 TITL 2 ACID SEQUENCE AND ELECTRON DENSITY MAPS OF RESIDUES REMARK 1 REF J.BIOL.CHEM. V. 258 508 1983 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 6 REMARK 1 AUTH D.GHOSH,S.O'DONNELL,W.FUREYJUNIOR,A.H.ROBBINS,C.D.STOUT REMARK 1 TITL IRON-SULFUR CLUSTERS AND PROTEIN STRUCTURE OF AZOTOBACTER REMARK 1 TITL 2 FERREDOXIN AT 2.0 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 158 73 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH D.GHOSH,W.FUREYJUNIOR,S.O'DONNELL,C.D.STOUT REMARK 1 TITL STRUCTURE OF A 7FE FERREDOXIN FROM AZOTOBACTER VINELANDII REMARK 1 REF J.BIOL.CHEM. V. 256 4185 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 8 REMARK 1 AUTH C.D.STOUT,D.GHOSH,V.PATTABHI,A.H.ROBBINS REMARK 1 TITL IRON-SULFUR CLUSTERS IN AZOTOBACTER FERREDOXIN AT 2.5 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF J.BIOL.CHEM. V. 255 1797 1980 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 9 REMARK 1 AUTH C.D.STOUT REMARK 1 TITL STRUCTURE OF THE IRON-SULFUR CLUSTERS IN AZOTOBACTER REMARK 1 TITL 2 FERREDOXIN AT 4.0 ANGSTROMS RESOLUTION REMARK 1 REF AM.CRYST.ASSOC.,ABSTR.PAPERS V. 6 97 1979 REMARK 1 REF 2 (WINTER MEETING) REMARK 1 REFN ISSN 0569-4221 REMARK 1 REFERENCE 10 REMARK 1 AUTH C.D.STOUT REMARK 1 TITL TWO CRYSTAL FORMS OF AZOTOBACTER FERREDOXIN REMARK 1 REF J.BIOL.CHEM. V. 254 3598 1979 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 11 REMARK 1 AUTH C.D.STOUT REMARK 1 TITL STRUCTURE OF THE IRON-SULPHUR CLUSTERS IN AZOTOBACTER REMARK 1 TITL 2 FERREDOXIN AT 4.0 ANGSTROMS RESOLUTION REMARK 1 REF NATURE V. 279 83 1979 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 3.670 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.70000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.50000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.85000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.55000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.85000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.55000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE STRUCTURE OF THIS MUTANT IS THE SAME AS THAT OF THE REMARK 400 NATIVE EXEPT THAT RESIDUE 20 HAS CHANGED FROM CYS TO ALA. REMARK 400 THIS PROTEIN HAS A CUBANE-LIKE (3FE-4S) CLUSTER AND ALSO A REMARK 400 STANDARD (4FE-4S) CLUSTER. THE (4FE-4S) CLUSTER HAS CYS 24 REMARK 400 AS A LIGAND INSTEAD OF CYS 20 (NOW ALA 20) AND THE REMARK 400 STRUCTURE IS REARRANGED AROUND THIS CLUSTER, ESPECIALLY AT REMARK 400 RESIDUES 22 - 24. THE OTHER LIGANDS OF THE (4FE-4S) REMARK 400 REMAIN THE SAME. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 35 NE2 HIS A 35 CD2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 10 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 HIS A 35 CB - CG - CD2 ANGL. DEV. = -13.6 DEGREES REMARK 500 CYS A 42 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 MET A 64 CA - CB - CG ANGL. DEV. = -12.9 DEGREES REMARK 500 TRP A 78 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 78 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 THR A 82 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 TRP A 94 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 94 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -0.53 77.32 REMARK 500 CYS A 11 -60.49 -106.48 REMARK 500 THR A 14 18.59 55.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 106 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 108 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 F3S A 108 S1 111.9 REMARK 620 3 F3S A 108 S3 116.7 102.6 REMARK 620 4 F3S A 108 S4 109.6 109.5 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 108 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 16 SG REMARK 620 2 F3S A 108 S1 112.4 REMARK 620 3 F3S A 108 S2 110.3 107.4 REMARK 620 4 F3S A 108 S3 114.8 103.7 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 107 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 SF4 A 107 S1 120.3 REMARK 620 3 SF4 A 107 S2 105.3 103.5 REMARK 620 4 SF4 A 107 S3 112.1 107.1 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 107 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 SF4 A 107 S2 118.3 REMARK 620 3 SF4 A 107 S3 109.2 108.9 REMARK 620 4 SF4 A 107 S4 108.7 106.2 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 107 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 SF4 A 107 S1 103.2 REMARK 620 3 SF4 A 107 S3 124.4 107.4 REMARK 620 4 SF4 A 107 S4 112.1 107.8 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 107 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 SF4 A 107 S1 107.6 REMARK 620 3 SF4 A 107 S2 117.7 104.1 REMARK 620 4 SF4 A 107 S4 110.7 110.5 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 108 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 F3S A 108 S2 110.8 REMARK 620 3 F3S A 108 S3 111.0 108.0 REMARK 620 4 F3S A 108 S4 108.3 108.8 110.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S A 108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FD1 RELATED DB: PDB REMARK 900 NATIVE REMARK 900 RELATED ID: 2FD2 RELATED DB: PDB REMARK 900 MUTANT DBREF 1FD2 A 1 106 UNP P00214 FER1_AZOVI 1 106 SEQADV 1FD2 ALA A 20 UNP P00214 CYS 20 CONFLICT SEQRES 1 A 106 ALA PHE VAL VAL THR ASP ASN CYS ILE LYS CYS LYS TYR SEQRES 2 A 106 THR ASP CYS VAL GLU VAL ALA PRO VAL ASP CYS PHE TYR SEQRES 3 A 106 GLU GLY PRO ASN PHE LEU VAL ILE HIS PRO ASP GLU CYS SEQRES 4 A 106 ILE ASP CYS ALA LEU CYS GLU PRO GLU CYS PRO ALA GLN SEQRES 5 A 106 ALA ILE PHE SER GLU ASP GLU VAL PRO GLU ASP MET GLN SEQRES 6 A 106 GLU PHE ILE GLN LEU ASN ALA GLU LEU ALA GLU VAL TRP SEQRES 7 A 106 PRO ASN ILE THR GLU LYS LYS ASP PRO LEU PRO ASP ALA SEQRES 8 A 106 GLU ASP TRP ASP GLY VAL LYS GLY LYS LEU GLN HIS LEU SEQRES 9 A 106 GLU ARG HET SF4 A 107 8 HET F3S A 108 7 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER FORMUL 2 SF4 FE4 S4 FORMUL 3 F3S FE3 S4 FORMUL 4 HOH *31(H2 O) HELIX 1 1 ASP A 6 ILE A 9 5 4 HELIX 2 2 THR A 14 VAL A 19 1 6 HELIX 3 3 LEU A 44 CYS A 49 1 6 HELIX 4 4 ASP A 58 VAL A 60 5 3 HELIX 5 5 PRO A 61 MET A 64 5 4 HELIX 6 6 GLN A 65 GLU A 76 1 12 HELIX 7 7 ASP A 90 ASP A 95 1 6 HELIX 8 8 GLY A 99 LEU A 104 5 6 SHEET 1 A 2 PHE A 2 VAL A 4 0 SHEET 2 A 2 ILE A 54 SER A 56 -1 O PHE A 55 N VAL A 3 SHEET 1 B 2 PHE A 25 GLU A 27 0 SHEET 2 B 2 LEU A 32 ILE A 34 -1 O VAL A 33 N TYR A 26 LINK SG CYS A 8 FE3 F3S A 108 1555 1555 2.27 LINK SG CYS A 16 FE1 F3S A 108 1555 1555 2.26 LINK SG CYS A 24 FE4 SF4 A 107 1555 1555 2.29 LINK SG CYS A 39 FE1 SF4 A 107 1555 1555 2.28 LINK SG CYS A 42 FE2 SF4 A 107 1555 1555 2.33 LINK SG CYS A 45 FE3 SF4 A 107 1555 1555 2.28 LINK SG CYS A 49 FE4 F3S A 108 1555 1555 2.27 SITE 1 AC1 9 PHE A 2 ALA A 20 CYS A 24 ILE A 34 SITE 2 AC1 9 CYS A 39 ILE A 40 CYS A 42 ALA A 43 SITE 3 AC1 9 CYS A 45 SITE 1 AC2 11 VAL A 4 CYS A 8 LYS A 12 TYR A 13 SITE 2 AC2 11 THR A 14 ASP A 15 CYS A 16 LEU A 32 SITE 3 AC2 11 CYS A 49 PRO A 50 ILE A 54 CRYST1 55.000 55.000 95.400 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010482 0.00000