HEADER RIBOSOME 26-JUL-00 1FG0 TITLE LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN TITLE 2 COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RIBOSOMAL RNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN V OF 23S RIBOSOMAL RNA; COMPND 5 OTHER_DETAILS: PART OF THE 50S LARGE RIBOSOMAL SUBUNIT; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(CCGGCGGGCUGGUUCAAACCGGCCCGCCGGACC)-3'-5'-R(P- COMPND 8 PUROMYCIN)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: THIS 13 BP MINIHELIX MIMICS A TYROSYL-TRNA ACCEPTOR COMPND 12 STEM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOARCULA MARISMORTUI; SOURCE 3 ORGANISM_TAXID: 2238; SOURCE 4 OTHER_DETAILS: CULTURED CELLS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES KEYWDS RIBOSOME ASSEMBLY, RNA-RNA, RIBOZYME, A-SITE, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR P.NISSEN,J.HANSEN,N.BAN,P.B.MOORE,T.A.STEITZ REVDAT 3 07-FEB-24 1FG0 1 REMARK REVDAT 2 24-FEB-09 1FG0 1 VERSN REVDAT 1 28-AUG-00 1FG0 0 JRNL AUTH P.NISSEN,J.HANSEN,N.BAN,P.B.MOORE,T.A.STEITZ JRNL TITL THE STRUCTURAL BASIS OF RIBOSOME ACTIVITY IN PEPTIDE BOND JRNL TITL 2 SYNTHESIS. JRNL REF SCIENCE V. 289 920 2000 JRNL REFN ISSN 0036-8075 JRNL PMID 10937990 JRNL DOI 10.1126/SCIENCE.289.5481.920 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N BAN,P.NISSEN,J.HANSEN,P.B.MOORE,T.A.STEITZ REMARK 1 TITL THE COMPLETE ATOMIC STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT REMARK 1 TITL 2 AT 2.4 A RESOLUTION REMARK 1 REF SCIENCE V. 289 905 2000 REMARK 1 REFN ISSN 0036-8075 REMARK 1 DOI 10.1126/SCIENCE.289.5481.905 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.BAN,P.NISSEN,J.HANSEN,M.CAPEL,P.B.MOORE,T.A.STEITZ REMARK 1 TITL PLACEMENT OF PROTEIN AND RNA STRUCTURES INTO A 5 REMARK 1 TITL 2 A-RESOLUTION MAP OF THE 50S RIBOSOMAL SUBUNIT REMARK 1 REF NATURE V. 400 841 1999 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/23641 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 447121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 10704 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURE HAS BEEN FITTED TO A 3.0 A RESOLUTION EXPERIMENTAL REMARK 3 MAP OBTAINED BY DENSITY MODIFICATION USING HEAVY ATOM DERIVED REMARK 3 PHASES REMARK 3 AND 2FO(COMPLEX)-FO(PARENT) AMPLITUDES REMARK 4 REMARK 4 1FG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000011557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 447121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, KCL, NH4CL, POTASSIUM REMARK 280 ACETATE, MGCL2, CDCL2, TRIS-MES. COMPLEX WAS OBTAINED BY CRYSTAL REMARK 280 SOAKING IN 0.1 MM MINIHELIX-PUROMYCIN, PH 5.8, BACK-EXTRACTION, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 287.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 287.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 106.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 150.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 106.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 150.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 287.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 106.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 150.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 287.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 106.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 150.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A A 2137 REMARK 465 C A 2138 REMARK 465 G A 2139 REMARK 465 U A 2140 REMARK 465 G A 2141 REMARK 465 G A 2142 REMARK 465 U A 2143 REMARK 465 C A 2144 REMARK 465 G A 2145 REMARK 465 C A 2146 REMARK 465 C A 2147 REMARK 465 G A 2148 REMARK 465 A A 2149 REMARK 465 U A 2150 REMARK 465 G A 2151 REMARK 465 U A 2152 REMARK 465 G A 2153 REMARK 465 C A 2154 REMARK 465 A A 2155 REMARK 465 G A 2156 REMARK 465 C A 2157 REMARK 465 A A 2158 REMARK 465 U A 2159 REMARK 465 A A 2160 REMARK 465 G A 2161 REMARK 465 G A 2162 REMARK 465 U A 2163 REMARK 465 A A 2164 REMARK 465 G A 2165 REMARK 465 G A 2166 REMARK 465 A A 2167 REMARK 465 G A 2168 REMARK 465 A A 2169 REMARK 465 C A 2170 REMARK 465 A A 2171 REMARK 465 C A 2172 REMARK 465 U A 2173 REMARK 465 A A 2174 REMARK 465 C A 2175 REMARK 465 A A 2176 REMARK 465 C A 2177 REMARK 465 A A 2178 REMARK 465 G A 2179 REMARK 465 G A 2180 REMARK 465 U A 2181 REMARK 465 A A 2182 REMARK 465 C A 2183 REMARK 465 C A 2184 REMARK 465 C A 2185 REMARK 465 G A 2186 REMARK 465 C A 2187 REMARK 465 G A 2188 REMARK 465 C A 2189 REMARK 465 U A 2190 REMARK 465 A A 2191 REMARK 465 G A 2192 REMARK 465 C A 2193 REMARK 465 G A 2194 REMARK 465 G A 2195 REMARK 465 G A 2196 REMARK 465 C A 2197 REMARK 465 C A 2198 REMARK 465 A A 2199 REMARK 465 C A 2200 REMARK 465 C A 2201 REMARK 465 G A 2202 REMARK 465 A A 2203 REMARK 465 G A 2204 REMARK 465 U A 2205 REMARK 465 C A 2206 REMARK 465 A A 2207 REMARK 465 A A 2208 REMARK 465 C A 2209 REMARK 465 A A 2210 REMARK 465 G A 2211 REMARK 465 U A 2212 REMARK 465 G A 2213 REMARK 465 A A 2214 REMARK 465 A A 2215 REMARK 465 A A 2216 REMARK 465 U A 2217 REMARK 465 A A 2218 REMARK 465 C A 2219 REMARK 465 U A 2220 REMARK 465 A A 2221 REMARK 465 C A 2222 REMARK 465 C A 2223 REMARK 465 C A 2224 REMARK 465 G A 2225 REMARK 465 U A 2226 REMARK 465 C A 2227 REMARK 465 G A 2228 REMARK 465 G A 2229 REMARK 465 U A 2230 REMARK 465 G A 2231 REMARK 465 A A 2232 REMARK 465 C A 2233 REMARK 465 U A 2234 REMARK 465 G A 2235 REMARK 465 C A 2236 REMARK 465 A A 2339 REMARK 465 C A 2340 REMARK 465 A A 2341 REMARK 465 G A 2342 REMARK 465 A A 2343 REMARK 465 A A 2664 REMARK 465 C B 43 REMARK 465 C B 44 REMARK 465 G B 45 REMARK 465 G B 46 REMARK 465 C B 47 REMARK 465 G B 48 REMARK 465 G B 49 REMARK 465 G B 50 REMARK 465 C B 51 REMARK 465 U B 52 REMARK 465 G B 53 REMARK 465 G B 54 REMARK 465 U B 55 REMARK 465 U B 56 REMARK 465 C B 57 REMARK 465 A B 58 REMARK 465 A B 59 REMARK 465 A B 60 REMARK 465 C B 61 REMARK 465 C B 62 REMARK 465 G B 63 REMARK 465 G B 64 REMARK 465 C B 65 REMARK 465 C B 66 REMARK 465 C B 67 REMARK 465 G B 68 REMARK 465 C B 69 REMARK 465 C B 70 REMARK 465 G B 71 REMARK 465 G B 72 REMARK 465 A B 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 U A 2589 N4 C B 74 1.19 REMARK 500 O2 U A 2589 C4 C B 74 1.31 REMARK 500 C3' G A 2289 OP2 U A 2290 1.38 REMARK 500 C3' G A 2102 OP1 A A 2103 1.40 REMARK 500 C2 U A 2589 N4 C B 74 1.41 REMARK 500 O2 U A 2589 N3 C B 74 1.51 REMARK 500 N2 G A 2102 CM PPU B 76 1.53 REMARK 500 C4' A A 2637 OP2 G A 2638 1.60 REMARK 500 C2 A A 2486 CE2 PPU B 76 1.65 REMARK 500 C3' U A 2615 OP1 G A 2616 1.69 REMARK 500 C3' C A 2533 OP2 C A 2534 1.75 REMARK 500 O2' C A 2542 O2 C B 75 1.76 REMARK 500 C2' U A 2615 O5' G A 2616 1.77 REMARK 500 N1 G A 2102 CM PPU B 76 1.77 REMARK 500 N4 C A 2114 O6 G A 2471 1.81 REMARK 500 O2 C A 2114 N2 G A 2471 1.86 REMARK 500 C2 U A 2589 C4 C B 74 1.87 REMARK 500 N3 C A 2114 N1 G A 2471 1.87 REMARK 500 N3 U A 2589 N4 C B 74 1.88 REMARK 500 C2 G A 2102 CM PPU B 76 1.90 REMARK 500 O2' C A 2114 O2' A A 2633 1.92 REMARK 500 O2' A A 2291 OP2 C A 2309 1.99 REMARK 500 N2 G A 2489 O2 C A 2533 2.03 REMARK 500 OP2 G A 2102 OP2 G A 2537 2.06 REMARK 500 O6 G A 2588 N4 C B 74 2.06 REMARK 500 N3 U A 2589 C4 C B 74 2.07 REMARK 500 N4 C A 2105 N3 C A 2536 2.09 REMARK 500 O6 G A 2113 N4 C A 2472 2.11 REMARK 500 O2 C A 2542 N2 G A 2617 2.13 REMARK 500 N4 C A 2542 N2 G A 2616 2.13 REMARK 500 N3 C A 2105 N2 G A 2481 2.16 REMARK 500 N6 A A 2103 N1 A A 2538 2.17 REMARK 500 C8 G A 2611 O6 G A 2616 2.17 REMARK 500 N4 C A 2105 N1 G A 2481 2.17 REMARK 500 O6 G A 2113 N3 C A 2472 2.18 REMARK 500 N3 C A 2114 N2 G A 2471 2.18 REMARK 500 C2 C A 2114 N2 G A 2471 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C A2098 C2' C A2098 C1' -0.049 REMARK 500 G A2099 C3' G A2099 C2' -0.073 REMARK 500 A A2101 O3' G A2102 P -0.449 REMARK 500 G A2102 C3' G A2102 C2' -0.073 REMARK 500 A A2103 O3' C A2104 P -0.238 REMARK 500 C A2104 C2' C A2104 C1' -0.049 REMARK 500 C A2104 O3' C A2105 P -0.503 REMARK 500 C A2105 O3' C A2106 P 0.110 REMARK 500 C A2106 C2' C A2106 C1' -0.048 REMARK 500 A A2108 O3' U A2109 P -0.123 REMARK 500 G A2111 C3' G A2111 C2' -0.072 REMARK 500 G A2111 O3' A A2112 P -0.427 REMARK 500 A A2112 O3' G A2113 P -0.162 REMARK 500 G A2113 C3' G A2113 C2' -0.073 REMARK 500 G A2113 O3' C A2114 P 0.145 REMARK 500 C A2114 C2' C A2114 C1' -0.048 REMARK 500 G A2283 O3' G A2284 P -0.466 REMARK 500 G A2284 C3' G A2284 C2' -0.072 REMARK 500 G A2284 O3' G A2285 P -0.604 REMARK 500 G A2285 C3' G A2285 C2' -0.072 REMARK 500 G A2285 O3' G A2286 P -0.424 REMARK 500 G A2286 C3' G A2286 C2' -0.072 REMARK 500 G A2286 O3' C A2287 P -0.411 REMARK 500 C A2287 C2' C A2287 C1' -0.049 REMARK 500 G A2288 C3' G A2288 C2' -0.073 REMARK 500 G A2289 C3' G A2289 C2' -0.072 REMARK 500 U A2290 O3' A A2291 P 0.207 REMARK 500 A A2483 O3' U A2484 P -0.132 REMARK 500 A A2486 O3' C A2487 P 0.194 REMARK 500 C A2487 C2' C A2487 C1' -0.049 REMARK 500 C A2487 O3' A A2488 P -0.290 REMARK 500 A A2488 O3' G A2489 P 0.223 REMARK 500 G A2489 O3' A A2490 P -0.530 REMARK 500 C A2533 O3' C A2534 P -0.941 REMARK 500 C A2534 O3' U A2535 P -0.476 REMARK 500 U A2535 O3' C A2536 P 0.164 REMARK 500 G A2537 O3' A A2538 P -0.614 REMARK 500 U A2539 O3' G A2540 P -0.753 REMARK 500 G A2540 O3' U A2541 P -0.488 REMARK 500 C A2542 C2' C A2542 C1' -0.049 REMARK 500 G A2585 O3' U A2586 P 0.196 REMARK 500 U A2587 O3' G A2588 P -0.076 REMARK 500 G A2588 C3' G A2588 C2' -0.073 REMARK 500 U A2615 O3' G A2616 P -0.930 REMARK 500 G A2617 C3' G A2617 C2' -0.073 REMARK 500 G A2617 O3' G A2618 P -0.512 REMARK 500 G A2618 C3' G A2618 C2' -0.072 REMARK 500 G A2618 O3' U A2619 P -0.607 REMARK 500 U A2620 O3' U A2621 P -0.126 REMARK 500 G A2634 C3' G A2634 C2' -0.073 REMARK 500 REMARK 500 THIS ENTRY HAS 60 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A2083 C2' - C3' - O3' ANGL. DEV. = 10.1 DEGREES REMARK 500 G A2090 C2' - C3' - O3' ANGL. DEV. = 9.6 DEGREES REMARK 500 G A2097 C3' - O3' - P ANGL. DEV. = -24.8 DEGREES REMARK 500 C A2098 O3' - P - O5' ANGL. DEV. = 19.1 DEGREES REMARK 500 C A2098 O3' - P - OP2 ANGL. DEV. = 12.2 DEGREES REMARK 500 C A2098 O3' - P - OP1 ANGL. DEV. = -35.5 DEGREES REMARK 500 C A2098 C3' - O3' - P ANGL. DEV. = -18.8 DEGREES REMARK 500 G A2099 O3' - P - O5' ANGL. DEV. = 13.9 DEGREES REMARK 500 G A2099 C1' - O4' - C4' ANGL. DEV. = -4.7 DEGREES REMARK 500 A A2101 C3' - O3' - P ANGL. DEV. = 10.8 DEGREES REMARK 500 G A2102 O3' - P - O5' ANGL. DEV. = 14.6 DEGREES REMARK 500 G A2102 O3' - P - OP2 ANGL. DEV. = -17.9 DEGREES REMARK 500 G A2102 C1' - O4' - C4' ANGL. DEV. = -4.7 DEGREES REMARK 500 G A2102 C3' - O3' - P ANGL. DEV. = 13.4 DEGREES REMARK 500 A A2103 O3' - P - O5' ANGL. DEV. = 28.3 DEGREES REMARK 500 A A2103 O3' - P - OP1 ANGL. DEV. = -80.5 DEGREES REMARK 500 C A2104 O3' - P - O5' ANGL. DEV. = 39.6 DEGREES REMARK 500 C A2104 O3' - P - OP2 ANGL. DEV. = -17.0 DEGREES REMARK 500 C A2104 O3' - P - OP1 ANGL. DEV. = -14.9 DEGREES REMARK 500 C A2104 C3' - O3' - P ANGL. DEV. = 22.0 DEGREES REMARK 500 C A2105 O3' - P - O5' ANGL. DEV. = -26.8 DEGREES REMARK 500 C A2105 O3' - P - OP1 ANGL. DEV. = 10.5 DEGREES REMARK 500 C A2106 O3' - P - O5' ANGL. DEV. = 11.9 DEGREES REMARK 500 C A2106 O3' - P - OP2 ANGL. DEV. = -17.5 DEGREES REMARK 500 C A2106 O3' - P - OP1 ANGL. DEV. = 6.8 DEGREES REMARK 500 C A2106 C3' - O3' - P ANGL. DEV. = 21.9 DEGREES REMARK 500 U A2107 O3' - P - O5' ANGL. DEV. = -34.4 DEGREES REMARK 500 U A2107 O3' - P - OP1 ANGL. DEV. = 12.8 DEGREES REMARK 500 U A2107 O5' - C5' - C4' ANGL. DEV. = -9.7 DEGREES REMARK 500 U A2107 P - O5' - C5' ANGL. DEV. = -17.1 DEGREES REMARK 500 U A2107 N1 - C2 - N3 ANGL. DEV. = 4.8 DEGREES REMARK 500 U A2107 C2 - N3 - C4 ANGL. DEV. = -4.3 DEGREES REMARK 500 U A2107 N1 - C2 - O2 ANGL. DEV. = -6.0 DEGREES REMARK 500 A A2108 C3' - O3' - P ANGL. DEV. = -10.2 DEGREES REMARK 500 U A2109 O3' - P - O5' ANGL. DEV. = -19.1 DEGREES REMARK 500 U A2109 O3' - P - OP2 ANGL. DEV. = -30.6 DEGREES REMARK 500 U A2109 O3' - P - OP1 ANGL. DEV. = 47.0 DEGREES REMARK 500 U A2109 O5' - C5' - C4' ANGL. DEV. = -9.8 DEGREES REMARK 500 U A2109 P - O5' - C5' ANGL. DEV. = -17.2 DEGREES REMARK 500 U A2109 N1 - C2 - N3 ANGL. DEV. = 4.8 DEGREES REMARK 500 U A2109 C2 - N3 - C4 ANGL. DEV. = -4.3 DEGREES REMARK 500 U A2109 N1 - C2 - O2 ANGL. DEV. = -6.0 DEGREES REMARK 500 U A2109 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 G A2110 O3' - P - O5' ANGL. DEV. = 18.6 DEGREES REMARK 500 G A2110 O3' - P - OP2 ANGL. DEV. = -17.6 DEGREES REMARK 500 G A2111 C1' - O4' - C4' ANGL. DEV. = -4.7 DEGREES REMARK 500 A A2112 O3' - P - O5' ANGL. DEV. = -20.3 DEGREES REMARK 500 A A2112 O3' - P - OP2 ANGL. DEV. = 17.9 DEGREES REMARK 500 A A2112 C3' - O3' - P ANGL. DEV. = -27.7 DEGREES REMARK 500 G A2113 O3' - P - O5' ANGL. DEV. = 42.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 164 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A2316 0.06 SIDE CHAIN REMARK 500 A A2463 0.06 SIDE CHAIN REMARK 500 C A2493 0.06 SIDE CHAIN REMARK 500 A A2506 0.10 SIDE CHAIN REMARK 500 U A2597 0.08 SIDE CHAIN REMARK 500 U A2607 0.08 SIDE CHAIN REMARK 500 G A2630 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FFK RELATED DB: PDB REMARK 900 COMPLETE ATOMIC STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT AT 2.4 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1FFZ RELATED DB: PDB REMARK 900 LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH RCC-DA-P-PUROMYCIN DBREF 1FG0 A 2063 2664 GB 3377779 AF034620 4658 5259 DBREF 1FG0 B 43 76 PDB 1FG0 1FG0 43 76 SEQRES 1 A 602 U U C C A G U G C G G A G SEQRES 2 A 602 U C U G G A G A C A C C C SEQRES 3 A 602 A G G G G G A A G C G A A SEQRES 4 A 602 G A C C C U A U G G A G C SEQRES 5 A 602 U U U A C U G C A G G C U SEQRES 6 A 602 G U C G C U G A G A C G U SEQRES 7 A 602 G G U C G C C G A U G U G SEQRES 8 A 602 C A G C A U A G G U A G G SEQRES 9 A 602 A G A C A C U A C A C A G SEQRES 10 A 602 G U A C C C G C G C U A G SEQRES 11 A 602 C G G G C C A C C G A G U SEQRES 12 A 602 C A A C A G U G A A A U A SEQRES 13 A 602 C U A C C C G U C G G U G SEQRES 14 A 602 A C U G C G A C U C U C A SEQRES 15 A 602 C U C C G G G A G G A G G SEQRES 16 A 602 A C A C C G A U A G C C G SEQRES 17 A 602 G G C A G U U U G A C U G SEQRES 18 A 602 G G G C G G U A C G C G C SEQRES 19 A 602 U C G A A A A G A U A U C SEQRES 20 A 602 G A G C G C G C C C U A U SEQRES 21 A 602 G G C U A U C U C A G C C SEQRES 22 A 602 G G G A C A G A G A C C C SEQRES 23 A 602 G G C G A A G A G U G C A SEQRES 24 A 602 A G A G C A A A A G A U A SEQRES 25 A 602 G C U U G A C A G U G U U SEQRES 26 A 602 C U U C C C A A C G A G G SEQRES 27 A 602 A A C G C U G A C G C G A SEQRES 28 A 602 A A G C G U G G U C U A G SEQRES 29 A 602 C G A A C C A A U U A G C SEQRES 30 A 602 C U G C U U G A U G C G G SEQRES 31 A 602 G C A A U U G A U G A C A SEQRES 32 A 602 G A A A A G C U A C C C U SEQRES 33 A 602 A G G G A U A A C A G A G SEQRES 34 A 602 U C G U C A C U C G C A A SEQRES 35 A 602 G A G C A C A U A U C G A SEQRES 36 A 602 C C G A G U G G C U U G C SEQRES 37 A 602 U A C C U C G A U G U C G SEQRES 38 A 602 G U U C C C U C C A U C C SEQRES 39 A 602 U G C C C G U G C A G A A SEQRES 40 A 602 G C G G G C A A G G G U G SEQRES 41 A 602 A G G U U G U U C G C C U SEQRES 42 A 602 A U U A A A G G A G G U C SEQRES 43 A 602 G U G A G C U G G G U U U SEQRES 44 A 602 A G A C C G U C G U G A G SEQRES 45 A 602 A C A G G U C G G C U G C SEQRES 46 A 602 U A U C U A C U G G G U G SEQRES 47 A 602 U G U A SEQRES 1 B 34 C C G G C G G G C U G G U SEQRES 2 B 34 U C A A A C C G G C C C G SEQRES 3 B 34 C C G G A C C PPU MODRES 1FG0 PPU B 76 A PUROMYCIN-5'-MONOPHOSPHATE HET PPU B 76 37 HETNAM PPU PUROMYCIN-5'-MONOPHOSPHATE FORMUL 2 PPU C22 H30 N7 O8 P CRYST1 212.000 300.000 574.000 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001742 0.00000