HEADER ELECTRON TRANSPORT 28-JUL-00 1FG4 TITLE STRUCTURE OF TRYPAREDOXIN II COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPAREDOXIN II; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRITHIDIA FASCICULATA; SOURCE 3 ORGANISM_TAXID: 5656; SOURCE 4 STRAIN: HS6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.HOFMANN,H.BUDDE,K.BRUNS,S.A.GUERRERO,H.M.KALISZ,U.MENGE, AUTHOR 2 M.MONTEMARTINI,E.NOGOCEKE,P.STEINERT,J.B.WISSING,L.FLOHE,H.J.HECHT REVDAT 5 20-NOV-24 1FG4 1 REMARK REVDAT 4 04-OCT-17 1FG4 1 REMARK REVDAT 3 24-FEB-09 1FG4 1 VERSN REVDAT 2 02-AUG-05 1FG4 1 DBREF REVDAT 1 25-APR-01 1FG4 0 JRNL AUTH B.HOFMANN,H.BUDDE,K.BRUNS,S.A.GUERRERO,H.M.KALISZ,U.MENGE, JRNL AUTH 2 M.MONTEMARTINI,E.NOGOCEKE,P.STEINERT,J.B.WISSING,L.FLOHE, JRNL AUTH 3 H.J.HECHT JRNL TITL STRUCTURES OF TRYPAREDOXINS REVEALING INTERACTION WITH JRNL TITL 2 TRYPANOTHIONE. JRNL REF BIOL.CHEM. V. 382 459 2001 JRNL REFN ISSN 1431-6730 JRNL PMID 11347894 JRNL DOI 10.1515/BC.2001.056 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MONTEMARTINI,H.M.KALISZ,M.KIESS,E.NOGOCEKE,M.SINGH, REMARK 1 AUTH 2 P.STEINERT,L.FLOHE REMARK 1 TITL SEQUENCE, HETEROLOGOUS EXPRESSION AND FUNCTIONAL REMARK 1 TITL 2 CHARACTERIZATION OF A NOVEL TRYPAREDOXIN FROM CRITHIDIA REMARK 1 TITL 3 FASCICULATA REMARK 1 REF BIOL.CHEM. V. 379 1137 1999 REMARK 1 REFN ISSN 1431-6730 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 23921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.032 ; 0.022 REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.072 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.176 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.441 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, HEPES, PH 8.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.64000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.74850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.64000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.74850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.64000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.64000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.74850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.64000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.64000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.74850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 146 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 465 LYS A 149 REMARK 465 SER B 2 REMARK 465 VAL B 145 REMARK 465 GLU B 146 REMARK 465 ALA B 147 REMARK 465 LYS B 148 REMARK 465 LYS B 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 119 ND2 ASN B 121 2.12 REMARK 500 OD1 ASP A 105 O HOH A 247 2.12 REMARK 500 OH TYR B 81 O TRP B 86 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 245 O HOH B 215 3555 2.13 REMARK 500 O HOH A 175 O HOH B 215 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 34 CG TYR A 34 CD2 0.101 REMARK 500 TYR A 34 CE1 TYR A 34 CZ 0.092 REMARK 500 SER A 69 CA SER A 69 CB 0.094 REMARK 500 CYS B 40 CB CYS B 40 SG -0.121 REMARK 500 PRO B 41 CA PRO B 41 CB 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 7 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 THR A 12 CA - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP A 20 OD1 - CG - OD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP A 20 CA - C - O ANGL. DEV. = 13.9 DEGREES REMARK 500 TYR A 34 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR A 34 CG - CD1 - CE1 ANGL. DEV. = 6.0 DEGREES REMARK 500 TYR A 34 CG - CD2 - CE2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 34 CZ - CE2 - CD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 PHE A 35 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 PHE A 35 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 44 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 PHE A 46 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 PHE A 53 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 PHE A 63 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE A 63 CB - CG - CD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 VAL A 65 CG1 - CB - CG2 ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE A 99 CG - CD1 - CE1 ANGL. DEV. = -6.9 DEGREES REMARK 500 THR A 101 O - C - N ANGL. DEV. = 11.7 DEGREES REMARK 500 THR A 102 OG1 - CB - CG2 ANGL. DEV. = -16.1 DEGREES REMARK 500 THR A 102 CA - CB - OG1 ANGL. DEV. = 12.7 DEGREES REMARK 500 LYS A 107 CB - CG - CD ANGL. DEV. = 16.0 DEGREES REMARK 500 GLU A 116 OE1 - CD - OE2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 128 CB - CG - CD ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 134 CB - CG - OD2 ANGL. DEV. = 12.0 DEGREES REMARK 500 LYS A 138 CA - CB - CG ANGL. DEV. = 22.2 DEGREES REMARK 500 ASN A 144 OD1 - CG - ND2 ANGL. DEV. = -24.2 DEGREES REMARK 500 ASN A 144 CB - CG - ND2 ANGL. DEV. = 23.0 DEGREES REMARK 500 ASN A 144 CA - C - O ANGL. DEV. = 17.4 DEGREES REMARK 500 ASN A 144 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 VAL A 145 CA - CB - CG1 ANGL. DEV. = -14.3 DEGREES REMARK 500 VAL A 145 CA - C - O ANGL. DEV. = 16.5 DEGREES REMARK 500 PHE B 8 CB - CG - CD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 THR B 12 CA - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 VAL B 14 CA - CB - CG2 ANGL. DEV. = 13.4 DEGREES REMARK 500 PHE B 32 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 PHE B 33 CB - CG - CD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 PHE B 33 CG - CD1 - CE1 ANGL. DEV. = -10.5 DEGREES REMARK 500 PHE B 33 CZ - CE2 - CD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 PHE B 33 CA - C - O ANGL. DEV. = -13.4 DEGREES REMARK 500 TYR B 34 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE B 35 CB - CG - CD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 PHE B 35 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 76 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17A -85.04 -22.99 REMARK 500 ALA A 18 40.17 -142.70 REMARK 500 TRP A 86 -153.98 -118.37 REMARK 500 THR A 124 149.80 -173.23 REMARK 500 ALA B 17A -81.59 -13.27 REMARK 500 ALA B 18 30.15 -140.40 REMARK 500 ALA B 27 128.92 -34.02 REMARK 500 TYR B 54 -72.88 -76.31 REMARK 500 ALA B 58 -77.35 -47.72 REMARK 500 ALA B 82 -19.70 -35.63 REMARK 500 TRP B 86 -165.28 -105.16 REMARK 500 PRO B 141 43.78 -100.72 REMARK 500 TRP B 142 58.95 35.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU B 4 -11.18 REMARK 500 LYS B 6 -10.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EWX RELATED DB: PDB REMARK 900 STRUCTURE OF NATIVE TRYPAREDOXIN I REMARK 900 RELATED ID: 1EZK RELATED DB: PDB REMARK 900 STRUCTURE OF RECOMBINANT TRYPAREDOXIN I DBREF 1FG4 A 2 149 UNP O77093 O77093_CRIFA 17 165 DBREF 1FG4 B 2 149 UNP O77093 O77093_CRIFA 17 165 SEQRES 1 A 149 SER GLY LEU LYS LYS PHE PHE PRO TYR SER THR ASN VAL SEQRES 2 A 149 LEU LYS GLY ALA ALA ALA ASP ILE ALA LEU PRO SER LEU SEQRES 3 A 149 ALA GLY LYS THR VAL PHE PHE TYR PHE SER ALA SER TRP SEQRES 4 A 149 CYS PRO PRO CYS ARG ALA PHE THR PRO GLN LEU ILE ASP SEQRES 5 A 149 PHE TYR LYS ALA HIS ALA GLU LYS LYS ASN PHE GLU VAL SEQRES 6 A 149 MET LEU ILE SER TRP ASP GLU SER ALA GLU ASP PHE LYS SEQRES 7 A 149 ASP TYR TYR ALA LYS MET PRO TRP LEU ALA LEU PRO PHE SEQRES 8 A 149 GLU ASP ARG LYS GLY MET GLU PHE LEU THR THR GLY PHE SEQRES 9 A 149 ASP VAL LYS SER ILE PRO THR LEU VAL GLY VAL GLU ALA SEQRES 10 A 149 ASP SER GLY ASN ILE ILE THR THR GLN ALA ARG THR MET SEQRES 11 A 149 VAL VAL LYS ASP PRO GLU ALA LYS ASP PHE PRO TRP PRO SEQRES 12 A 149 ASN VAL GLU ALA LYS LYS SEQRES 1 B 149 SER GLY LEU LYS LYS PHE PHE PRO TYR SER THR ASN VAL SEQRES 2 B 149 LEU LYS GLY ALA ALA ALA ASP ILE ALA LEU PRO SER LEU SEQRES 3 B 149 ALA GLY LYS THR VAL PHE PHE TYR PHE SER ALA SER TRP SEQRES 4 B 149 CYS PRO PRO CYS ARG ALA PHE THR PRO GLN LEU ILE ASP SEQRES 5 B 149 PHE TYR LYS ALA HIS ALA GLU LYS LYS ASN PHE GLU VAL SEQRES 6 B 149 MET LEU ILE SER TRP ASP GLU SER ALA GLU ASP PHE LYS SEQRES 7 B 149 ASP TYR TYR ALA LYS MET PRO TRP LEU ALA LEU PRO PHE SEQRES 8 B 149 GLU ASP ARG LYS GLY MET GLU PHE LEU THR THR GLY PHE SEQRES 9 B 149 ASP VAL LYS SER ILE PRO THR LEU VAL GLY VAL GLU ALA SEQRES 10 B 149 ASP SER GLY ASN ILE ILE THR THR GLN ALA ARG THR MET SEQRES 11 B 149 VAL VAL LYS ASP PRO GLU ALA LYS ASP PHE PRO TRP PRO SEQRES 12 B 149 ASN VAL GLU ALA LYS LYS FORMUL 3 HOH *178(H2 O) HELIX 1 1 LEU A 4 PHE A 8 5 5 HELIX 2 2 ALA A 22 ALA A 27 5 6 HELIX 3 3 CYS A 40 ALA A 58 1 19 HELIX 4 4 SER A 73 LYS A 83 1 11 HELIX 5 5 ASP A 93 PHE A 104 1 12 HELIX 6 6 GLN A 126 ASP A 134 1 9 HELIX 7 7 GLY B 3 PHE B 8 5 6 HELIX 8 8 CYS B 40 ALA B 58 1 19 HELIX 9 9 HIS B 57 ASN B 62 1 6 HELIX 10 10 SER B 73 ALA B 82 1 10 HELIX 11 11 ASP B 93 ASP B 105 1 13 HELIX 12 12 GLN B 126 ASP B 134 1 9 SHEET 1 A 7 ALA A 19 ILE A 21 0 SHEET 2 A 7 VAL A 14 LYS A 16 -1 O VAL A 14 N ILE A 21 SHEET 3 A 7 LEU A 87 ALA A 88 -1 O ALA A 88 N LEU A 15 SHEET 4 A 7 PHE A 63 SER A 69 1 O VAL A 65 N LEU A 87 SHEET 5 A 7 THR A 30 SER A 36 1 O THR A 30 N GLU A 64 SHEET 6 A 7 THR A 111 GLU A 116 -1 O THR A 111 N PHE A 35 SHEET 7 A 7 ILE A 122 THR A 124 -1 N ILE A 123 O GLY A 114 SHEET 1 B 7 ALA B 19 ALA B 22 0 SHEET 2 B 7 ASN B 13 LYS B 16 -1 N VAL B 14 O ILE B 21 SHEET 3 B 7 LEU B 87 ALA B 88 -1 O ALA B 88 N LEU B 15 SHEET 4 B 7 PHE B 63 SER B 69 1 O VAL B 65 N LEU B 87 SHEET 5 B 7 THR B 30 SER B 36 1 O THR B 30 N GLU B 64 SHEET 6 B 7 THR B 111 GLU B 116 -1 O THR B 111 N PHE B 35 SHEET 7 B 7 ILE B 122 THR B 124 -1 N ILE B 123 O GLY B 114 SSBOND 1 CYS B 40 CYS B 43 1555 1555 2.55 CISPEP 1 ILE A 109 PRO A 110 0 -1.31 CISPEP 2 PHE A 140 PRO A 141 0 2.55 CISPEP 3 ILE B 109 PRO B 110 0 -4.90 CISPEP 4 PHE B 140 PRO B 141 0 -1.17 CRYST1 109.280 109.280 55.497 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018019 0.00000