HEADER ELECTRON TRANSPORT 07-AUG-00 1FJ0 TITLE STRUCTURE DETERMINATION OF THE FERRICYTOCHROME C2 FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C2; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 STRAIN: 42 OL KEYWDS ELECTRON CARRIER, HEME PROTEIN, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.GEREMIA REVDAT 6 09-AUG-23 1FJ0 1 REMARK LINK REVDAT 5 22-JAN-20 1FJ0 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK ATOM REVDAT 4 25-DEC-19 1FJ0 1 SEQADV SEQRES LINK REVDAT 3 13-JUL-11 1FJ0 1 VERSN REVDAT 2 24-FEB-09 1FJ0 1 VERSN REVDAT 1 16-JAN-02 1FJ0 0 JRNL AUTH S.GEREMIA,G.GARAU,L.VACCARI,R.SGARRA,M.S.VIEZZOLI, JRNL AUTH 2 M.CALLIGARIS,L.RANDACCIO JRNL TITL CLEAVAGE OF THE IRON-METHIONINE BOND IN C-TYPE CYTOCHROMES: JRNL TITL 2 CRYSTAL STRUCTURE OF OXIDIZED AND REDUCED CYTOCHROME C(2) JRNL TITL 3 FROM RHODOPSEUDOMONAS PALUSTRIS AND ITS AMMONIA COMPLEX. JRNL REF PROTEIN SCI. V. 11 6 2002 JRNL REFN ISSN 0961-8368 JRNL PMID 11742117 JRNL DOI 10.1110/PS.PS.13102 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GARAU,S.GEREMIA,L.RANDACCIO,L.VACCARI,M.S.VIEZZOLI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF TWO REMARK 1 TITL 2 PH-DEPENDENT FORMS OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS REMARK 1 TITL 3 PALUSTRIS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH R.P.AMBLER,M.DANIEL,J.HERMOSO,T.E.MEYER,R.G.BARTSCH, REMARK 1 AUTH 2 M.D.KAMEN REMARK 1 TITL CYTOCHROME C2 SEQUENCE VARIATION AMONG THE RECOGNISED REMARK 1 TITL 2 SPECIES OF PURPLE NONSULPHUR PHOTOSYNTHETIC BACTERIA REMARK 1 REF NATURE V. 278 659 1979 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.SOGABE,K.MIKI REMARK 1 TITL REFINED CRYSTAL STRUCTURE OF FERROCYTOCHROME C2 FROM REMARK 1 TITL 2 RHODOPSEUDOMONAS VIRIDIS AT 1.6 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 252 235 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1995.0491 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2648 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 188 REMARK 3 SOLVENT ATOMS : 653 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.194 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.011 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.025 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.030 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.021 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.113 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.167 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.258 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.108 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.500 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 15.200; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 13.500; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.715 ; 0.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.781 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.245 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.076 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING NCS RESTRAINTS WERE REMARK 3 RELEASED: MAIN-CHAIN AND SIDE-CHAIN OF THR94, PHE95 AND SIDE- REMARK 3 CHAIN OF LYS11, ASP20, LYS21, GLU53, LYS76, LYS96, LYS 114. THE REMARK 3 NCS RESTRAINTS ARE AS FOLLOWS: DELTA 1- RMS:0.076, SIGMA:0.500, REMARK 3 DELTA 2- RMS:0.101, SIGMA 0.500, DELTA 3- RMS:0.056, SIGMA:0.500, REMARK 3 DELTA 4- RMS:0.045, SIGMA:0.500. REMARK 4 REMARK 4 1FJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2C2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, FERRICYANIDE, PH REMARK 280 4.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.76500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 2 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 23 -125.72 -145.45 REMARK 500 ASP A 69 86.12 -167.99 REMARK 500 MET B 23 -125.74 -138.22 REMARK 500 ASP B 69 89.45 -164.73 REMARK 500 MET C 23 -126.03 -145.34 REMARK 500 ASP C 69 87.64 -169.89 REMARK 500 MET D 23 -125.65 -142.86 REMARK 500 ASP D 69 91.08 -167.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 809 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 273 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 281 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH C 492 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH D 270 DISTANCE = 6.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 115 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 17 NE2 REMARK 620 2 HEC A 115 NA 91.6 REMARK 620 3 HEC A 115 NB 91.0 89.4 REMARK 620 4 HEC A 115 NC 89.7 178.7 90.8 REMARK 620 5 HEC A 115 ND 89.4 90.2 179.4 89.5 REMARK 620 6 MET A 93 SD 175.7 85.6 92.1 93.1 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 115 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 17 NE2 REMARK 620 2 HEC B 115 NA 89.5 REMARK 620 3 HEC B 115 NB 88.8 90.0 REMARK 620 4 HEC B 115 NC 89.2 178.7 90.3 REMARK 620 5 HEC B 115 ND 87.7 89.9 176.6 89.8 REMARK 620 6 MET B 93 SD 174.2 86.4 95.3 94.8 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 115 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 17 NE2 REMARK 620 2 HEC C 115 NA 91.9 REMARK 620 3 HEC C 115 NB 91.4 89.5 REMARK 620 4 HEC C 115 NC 89.1 179.0 90.5 REMARK 620 5 HEC C 115 ND 88.0 89.5 178.9 90.4 REMARK 620 6 MET C 93 SD 174.6 85.6 93.3 93.3 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 115 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 17 NE2 REMARK 620 2 HEC D 115 NA 91.8 REMARK 620 3 HEC D 115 NB 89.3 90.5 REMARK 620 4 HEC D 115 NC 90.0 178.2 89.5 REMARK 620 5 HEC D 115 ND 90.5 90.4 179.1 89.6 REMARK 620 6 MET D 93 SD 177.1 86.1 92.7 92.1 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 656 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 657 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 655 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HRO RELATED DB: PDB REMARK 900 1HRO IS A PROTEIN FROM A DIFFERENT BACTERIA. REMARK 900 RELATED ID: 1CO6 RELATED DB: PDB REMARK 900 1CO6 IS A PROTEIN FROM A DIFFERENT BACTERIA. REMARK 900 RELATED ID: 5CYT RELATED DB: PDB REMARK 900 5CYT IS A RELATED MITOCHONDRIAL PROTEIN. DBREF 1FJ0 A 1 114 UNP P00091 CYC22_RHOPA 1 114 DBREF 1FJ0 B 1 114 UNP P00091 CYC22_RHOPA 1 114 DBREF 1FJ0 C 1 114 UNP P00091 CYC22_RHOPA 1 114 DBREF 1FJ0 D 1 114 UNP P00091 CYC22_RHOPA 1 114 SEQADV 1FJ0 ALA A 29 UNP P00091 GLY 29 CONFLICT SEQADV 1FJ0 VAL A 64 UNP P00091 ILE 64 CONFLICT SEQADV 1FJ0 PRO A 65 UNP P00091 ASN 65 CONFLICT SEQADV 1FJ0 ALA A 68 UNP P00091 ASN 68 CONFLICT SEQADV 1FJ0 GLU A 80 UNP P00091 ASP 80 CONFLICT SEQADV 1FJ0 ALA B 29 UNP P00091 GLY 29 CONFLICT SEQADV 1FJ0 VAL B 64 UNP P00091 ILE 64 CONFLICT SEQADV 1FJ0 PRO B 65 UNP P00091 ASN 65 CONFLICT SEQADV 1FJ0 ALA B 68 UNP P00091 ASN 68 CONFLICT SEQADV 1FJ0 GLU B 80 UNP P00091 ASP 80 CONFLICT SEQADV 1FJ0 ALA C 29 UNP P00091 GLY 29 CONFLICT SEQADV 1FJ0 VAL C 64 UNP P00091 ILE 64 CONFLICT SEQADV 1FJ0 PRO C 65 UNP P00091 ASN 65 CONFLICT SEQADV 1FJ0 ALA C 68 UNP P00091 ASN 68 CONFLICT SEQADV 1FJ0 GLU C 80 UNP P00091 ASP 80 CONFLICT SEQADV 1FJ0 ALA D 29 UNP P00091 GLY 29 CONFLICT SEQADV 1FJ0 VAL D 64 UNP P00091 ILE 64 CONFLICT SEQADV 1FJ0 PRO D 65 UNP P00091 ASN 65 CONFLICT SEQADV 1FJ0 ALA D 68 UNP P00091 ASN 68 CONFLICT SEQADV 1FJ0 GLU D 80 UNP P00091 ASP 80 CONFLICT SEQRES 1 A 114 PCA ASP ALA LYS ALA GLY GLU ALA VAL PHE LYS GLN CYS SEQRES 2 A 114 MET THR CYS HIS ARG ALA ASP LYS ASN MET VAL GLY PRO SEQRES 3 A 114 ALA LEU ALA GLY VAL VAL GLY ARG LYS ALA GLY THR ALA SEQRES 4 A 114 ALA GLY PHE THR TYR SER PRO LEU ASN HIS ASN SER GLY SEQRES 5 A 114 GLU ALA GLY LEU VAL TRP THR ALA ASP ASN ILE VAL PRO SEQRES 6 A 114 TYR LEU ALA ASP PRO ASN ALA PHE LEU LYS LYS PHE LEU SEQRES 7 A 114 THR GLU LYS GLY LYS ALA ASP GLN ALA VAL GLY VAL THR SEQRES 8 A 114 LYS MET THR PHE LYS LEU ALA ASN GLU GLN GLN ARG LYS SEQRES 9 A 114 ASP VAL VAL ALA TYR LEU ALA THR LEU LYS SEQRES 1 B 114 PCA ASP ALA LYS ALA GLY GLU ALA VAL PHE LYS GLN CYS SEQRES 2 B 114 MET THR CYS HIS ARG ALA ASP LYS ASN MET VAL GLY PRO SEQRES 3 B 114 ALA LEU ALA GLY VAL VAL GLY ARG LYS ALA GLY THR ALA SEQRES 4 B 114 ALA GLY PHE THR TYR SER PRO LEU ASN HIS ASN SER GLY SEQRES 5 B 114 GLU ALA GLY LEU VAL TRP THR ALA ASP ASN ILE VAL PRO SEQRES 6 B 114 TYR LEU ALA ASP PRO ASN ALA PHE LEU LYS LYS PHE LEU SEQRES 7 B 114 THR GLU LYS GLY LYS ALA ASP GLN ALA VAL GLY VAL THR SEQRES 8 B 114 LYS MET THR PHE LYS LEU ALA ASN GLU GLN GLN ARG LYS SEQRES 9 B 114 ASP VAL VAL ALA TYR LEU ALA THR LEU LYS SEQRES 1 C 114 PCA ASP ALA LYS ALA GLY GLU ALA VAL PHE LYS GLN CYS SEQRES 2 C 114 MET THR CYS HIS ARG ALA ASP LYS ASN MET VAL GLY PRO SEQRES 3 C 114 ALA LEU ALA GLY VAL VAL GLY ARG LYS ALA GLY THR ALA SEQRES 4 C 114 ALA GLY PHE THR TYR SER PRO LEU ASN HIS ASN SER GLY SEQRES 5 C 114 GLU ALA GLY LEU VAL TRP THR ALA ASP ASN ILE VAL PRO SEQRES 6 C 114 TYR LEU ALA ASP PRO ASN ALA PHE LEU LYS LYS PHE LEU SEQRES 7 C 114 THR GLU LYS GLY LYS ALA ASP GLN ALA VAL GLY VAL THR SEQRES 8 C 114 LYS MET THR PHE LYS LEU ALA ASN GLU GLN GLN ARG LYS SEQRES 9 C 114 ASP VAL VAL ALA TYR LEU ALA THR LEU LYS SEQRES 1 D 114 PCA ASP ALA LYS ALA GLY GLU ALA VAL PHE LYS GLN CYS SEQRES 2 D 114 MET THR CYS HIS ARG ALA ASP LYS ASN MET VAL GLY PRO SEQRES 3 D 114 ALA LEU ALA GLY VAL VAL GLY ARG LYS ALA GLY THR ALA SEQRES 4 D 114 ALA GLY PHE THR TYR SER PRO LEU ASN HIS ASN SER GLY SEQRES 5 D 114 GLU ALA GLY LEU VAL TRP THR ALA ASP ASN ILE VAL PRO SEQRES 6 D 114 TYR LEU ALA ASP PRO ASN ALA PHE LEU LYS LYS PHE LEU SEQRES 7 D 114 THR GLU LYS GLY LYS ALA ASP GLN ALA VAL GLY VAL THR SEQRES 8 D 114 LYS MET THR PHE LYS LEU ALA ASN GLU GLN GLN ARG LYS SEQRES 9 D 114 ASP VAL VAL ALA TYR LEU ALA THR LEU LYS MODRES 1FJ0 PCA A 1 GLN PYROGLUTAMIC ACID MODRES 1FJ0 PCA B 1 GLN PYROGLUTAMIC ACID MODRES 1FJ0 PCA C 1 GLN PYROGLUTAMIC ACID MODRES 1FJ0 PCA D 1 GLN PYROGLUTAMIC ACID HET PCA A 1 8 HET PCA B 1 8 HET PCA C 1 8 HET PCA D 1 8 HET SO4 A 657 5 HET HEC A 115 43 HET HEC B 115 43 HET SO4 C 656 5 HET HEC C 115 43 HET GOL C 655 6 HET HEC D 115 43 HETNAM PCA PYROGLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM HEC HEME C HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA 4(C5 H7 N O3) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 HEC 4(C34 H34 FE N4 O4) FORMUL 10 GOL C3 H8 O3 FORMUL 12 HOH *653(H2 O) HELIX 1 1 ASP A 2 MET A 14 1 13 HELIX 2 2 SER A 45 ALA A 54 1 10 HELIX 3 3 ASN A 62 ASP A 69 1 8 HELIX 4 4 ASP A 69 LYS A 81 1 13 HELIX 5 5 GLY A 82 GLY A 82 5 1 HELIX 6 6 LYS A 83 VAL A 88 5 6 HELIX 7 7 ASN A 99 LEU A 113 1 15 HELIX 8 8 ASP B 2 MET B 14 1 13 HELIX 9 9 SER B 45 ALA B 54 1 10 HELIX 10 10 ASN B 62 ASP B 69 1 8 HELIX 11 11 ASP B 69 LYS B 81 1 13 HELIX 12 12 LYS B 83 VAL B 88 5 6 HELIX 13 13 ASN B 99 LEU B 113 1 15 HELIX 14 14 ASP C 2 MET C 14 1 13 HELIX 15 15 SER C 45 ALA C 54 1 10 HELIX 16 16 ASN C 62 ASP C 69 1 8 HELIX 17 17 ASP C 69 LYS C 81 1 13 HELIX 18 18 LYS C 83 VAL C 88 5 6 HELIX 19 19 ASN C 99 THR C 112 1 14 HELIX 20 20 ASP D 2 MET D 14 1 13 HELIX 21 21 SER D 45 ALA D 54 1 10 HELIX 22 22 ASN D 62 ASP D 69 1 8 HELIX 23 23 ASP D 69 LYS D 81 1 13 HELIX 24 24 LYS D 83 VAL D 88 5 6 HELIX 25 25 ASN D 99 LEU D 113 1 15 LINK C PCA A 1 N ASP A 2 1555 1555 1.33 LINK SG CYS A 13 CAB HEC A 115 1555 1555 1.81 LINK SG CYS A 16 CAC HEC A 115 1555 1555 1.85 LINK C PCA B 1 N ASP B 2 1555 1555 1.33 LINK SG CYS B 13 CAB HEC B 115 1555 1555 1.81 LINK SG CYS B 16 CAC HEC B 115 1555 1555 1.82 LINK C PCA C 1 N ASP C 2 1555 1555 1.33 LINK SG CYS C 13 CAB HEC C 115 1555 1555 1.81 LINK SG CYS C 16 CAC HEC C 115 1555 1555 1.84 LINK C PCA D 1 N ASP D 2 1555 1555 1.30 LINK SG CYS D 13 CAB HEC D 115 1555 1555 1.82 LINK SG CYS D 16 CAC HEC D 115 1555 1555 1.83 LINK NE2 HIS A 17 FE HEC A 115 1555 1555 1.99 LINK SD MET A 93 FE HEC A 115 1555 1555 2.34 LINK NE2 HIS B 17 FE HEC B 115 1555 1555 2.08 LINK SD MET B 93 FE HEC B 115 1555 1555 2.31 LINK NE2 HIS C 17 FE HEC C 115 1555 1555 2.02 LINK SD MET C 93 FE HEC C 115 1555 1555 2.33 LINK NE2 HIS D 17 FE HEC D 115 1555 1555 1.98 LINK SD MET D 93 FE HEC D 115 1555 1555 2.35 SITE 1 AC1 5 ARG C 18 ALA C 19 ASP C 20 LYS C 21 SITE 2 AC1 5 HOH C 465 SITE 1 AC2 4 ARG A 18 ALA A 19 ASP A 20 LYS A 21 SITE 1 AC3 21 GLN A 12 CYS A 13 CYS A 16 HIS A 17 SITE 2 AC3 21 VAL A 24 GLY A 25 PRO A 26 ARG A 34 SITE 3 AC3 21 ALA A 36 GLY A 37 PHE A 42 TYR A 44 SITE 4 AC3 21 SER A 45 ASN A 48 TRP A 58 TYR A 66 SITE 5 AC3 21 THR A 91 LYS A 92 MET A 93 PHE A 95 SITE 6 AC3 21 HOH A 659 SITE 1 AC4 21 THR A 59 GLN B 12 CYS B 13 CYS B 16 SITE 2 AC4 21 HIS B 17 VAL B 24 GLY B 25 PRO B 26 SITE 3 AC4 21 ARG B 34 ALA B 36 GLY B 37 TYR B 44 SITE 4 AC4 21 SER B 45 ASN B 48 TRP B 58 TYR B 66 SITE 5 AC4 21 THR B 91 LYS B 92 MET B 93 PHE B 95 SITE 6 AC4 21 HOH B 126 SITE 1 AC5 23 GLN C 12 CYS C 13 CYS C 16 HIS C 17 SITE 2 AC5 23 VAL C 24 GLY C 25 PRO C 26 ARG C 34 SITE 3 AC5 23 ALA C 36 GLY C 37 PHE C 42 TYR C 44 SITE 4 AC5 23 SER C 45 ASN C 48 TRP C 58 TYR C 66 SITE 5 AC5 23 THR C 91 LYS C 92 MET C 93 THR C 94 SITE 6 AC5 23 PHE C 95 HOH C 338 THR D 59 SITE 1 AC6 21 THR C 59 GLN D 12 CYS D 13 CYS D 16 SITE 2 AC6 21 HIS D 17 VAL D 24 GLY D 25 PRO D 26 SITE 3 AC6 21 ARG D 34 ALA D 36 GLY D 37 TYR D 44 SITE 4 AC6 21 SER D 45 ASN D 48 TRP D 58 TYR D 66 SITE 5 AC6 21 THR D 91 LYS D 92 MET D 93 PHE D 95 SITE 6 AC6 21 HOH D 127 SITE 1 AC7 7 LYS C 35 GLU C 53 HOH C 626 ALA D 8 SITE 2 AC7 7 VAL D 9 LYS D 11 GLN D 12 CRYST1 50.310 71.530 66.660 90.00 93.52 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019877 0.000000 0.001223 0.00000 SCALE2 0.000000 0.013980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015030 0.00000 HETATM 1 N PCA A 1 23.139 20.879 48.127 1.00 13.93 N HETATM 2 CA PCA A 1 24.136 20.194 47.283 1.00 12.56 C HETATM 3 CB PCA A 1 25.481 20.674 47.759 1.00 21.33 C HETATM 4 CG PCA A 1 25.250 21.407 49.035 1.00 18.56 C HETATM 5 CD PCA A 1 23.796 21.566 49.237 1.00 15.28 C HETATM 6 OE PCA A 1 23.110 22.344 49.852 1.00 17.50 O HETATM 7 C PCA A 1 23.969 18.683 47.406 1.00 12.28 C HETATM 8 O PCA A 1 24.889 17.932 47.150 1.00 15.59 O