data_1FJA # _entry.id 1FJA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FJA pdb_00001fja 10.2210/pdb1fja/pdb WWPDB D_1000173307 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-06-10 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 2 0 2023-11-15 7 'Structure model' 3 0 2024-07-10 8 'Structure model' 3 1 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Atomic model' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Database references' 13 6 'Structure model' 'Derived calculations' 14 6 'Structure model' Other 15 7 'Structure model' 'Data collection' 16 7 'Structure model' 'Derived calculations' 17 7 'Structure model' 'Non-polymer description' 18 7 'Structure model' 'Structure summary' 19 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' atom_site 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_database_status 6 6 'Structure model' pdbx_validate_polymer_linkage 7 6 'Structure model' struct_conn 8 7 'Structure model' chem_comp 9 7 'Structure model' chem_comp_atom 10 7 'Structure model' chem_comp_bond 11 7 'Structure model' entity 12 7 'Structure model' struct_conn 13 8 'Structure model' pdbx_entry_details 14 8 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_atom_site.auth_atom_id' 2 6 'Structure model' '_atom_site.label_atom_id' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_pdbx_database_status.process_site' 6 6 'Structure model' '_struct_conn.pdbx_dist_value' 7 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 12 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 14 7 'Structure model' '_chem_comp.formula' 15 7 'Structure model' '_chem_comp.formula_weight' 16 7 'Structure model' '_entity.formula_weight' 17 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 8 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FJA _pdbx_database_status.recvd_initial_deposition_date 1995-12-15 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, H.' 1 'Liu, X.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'DNA Bending and Unwinding Associated with Actinomycin D Antibiotics Bound to Partially Overlapping Sites on DNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 258 _citation.page_first 457 _citation.page_last ? _citation.year 1996 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8642603 _citation.pdbx_database_id_DOI 10.1006/JMBI.1996.0262 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, H.' 1 ? primary 'Liu, X.' 2 ? primary 'Patel, D.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*GP*CP*GP*CP*TP*T)-3') ; 2426.617 2 ? ? ? ? 2 polymer syn 'ACTINOMYCIN D' 1291.446 2 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name DACTINOMYCIN # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)' AAGCGCTT A,B ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 DT n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PXZ n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'STREPTOMYCES ANTIBIOTICUS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1890 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 ? ? ? A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 ? ? ? A . n B 1 1 DA 1 1 ? ? ? B . n B 1 2 DA 2 2 2 DA DA B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DT 7 7 7 DT DT B . n B 1 8 DT 8 8 ? ? ? B . n C 2 1 THR 1 1 1 THR THR C . n C 2 2 DVA 2 2 2 DVA DVA C . n C 2 3 PRO 3 3 3 PRO PRO C . n C 2 4 SAR 4 4 4 SAR SAR C . n C 2 5 MVA 5 5 5 MVA MVA C . n C 2 6 PXZ 6 6 6 PXZ PXZ C . n C 2 7 THR 7 7 7 THR THR C . n C 2 8 DVA 8 8 8 DVA DVA C . n C 2 9 PRO 9 9 9 PRO PRO C . n C 2 10 SAR 10 10 10 SAR SAR C . n C 2 11 MVA 11 11 11 MVA MVA C . n D 2 1 THR 1 1 1 THR THR D . n D 2 2 DVA 2 2 2 DVA DVA D . n D 2 3 PRO 3 3 3 PRO PRO D . n D 2 4 SAR 4 4 4 SAR SAR D . n D 2 5 MVA 5 5 5 MVA MVA D . n D 2 6 PXZ 6 6 6 PXZ PXZ D . n D 2 7 THR 7 7 7 THR THR D . n D 2 8 DVA 8 8 8 DVA DVA D . n D 2 9 PRO 9 9 9 PRO PRO D . n D 2 10 SAR 10 10 10 SAR SAR D . n D 2 11 MVA 11 11 11 MVA MVA D . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DA 2 ? P ? A DA 2 P 2 1 Y 1 A DA 2 ? OP1 ? A DA 2 OP1 3 1 Y 1 A DA 2 ? OP2 ? A DA 2 OP2 4 1 Y 1 B DA 2 ? P ? B DA 2 P 5 1 Y 1 B DA 2 ? OP1 ? B DA 2 OP1 6 1 Y 1 B DA 2 ? OP2 ? B DA 2 OP2 7 2 Y 1 A DA 2 ? P ? A DA 2 P 8 2 Y 1 A DA 2 ? OP1 ? A DA 2 OP1 9 2 Y 1 A DA 2 ? OP2 ? A DA 2 OP2 10 2 Y 1 B DA 2 ? P ? B DA 2 P 11 2 Y 1 B DA 2 ? OP1 ? B DA 2 OP1 12 2 Y 1 B DA 2 ? OP2 ? B DA 2 OP2 13 3 Y 1 A DA 2 ? P ? A DA 2 P 14 3 Y 1 A DA 2 ? OP1 ? A DA 2 OP1 15 3 Y 1 A DA 2 ? OP2 ? A DA 2 OP2 16 3 Y 1 B DA 2 ? P ? B DA 2 P 17 3 Y 1 B DA 2 ? OP1 ? B DA 2 OP1 18 3 Y 1 B DA 2 ? OP2 ? B DA 2 OP2 19 4 Y 1 A DA 2 ? P ? A DA 2 P 20 4 Y 1 A DA 2 ? OP1 ? A DA 2 OP1 21 4 Y 1 A DA 2 ? OP2 ? A DA 2 OP2 22 4 Y 1 B DA 2 ? P ? B DA 2 P 23 4 Y 1 B DA 2 ? OP1 ? B DA 2 OP1 24 4 Y 1 B DA 2 ? OP2 ? B DA 2 OP2 25 5 Y 1 A DA 2 ? P ? A DA 2 P 26 5 Y 1 A DA 2 ? OP1 ? A DA 2 OP1 27 5 Y 1 A DA 2 ? OP2 ? A DA 2 OP2 28 5 Y 1 B DA 2 ? P ? B DA 2 P 29 5 Y 1 B DA 2 ? OP1 ? B DA 2 OP1 30 5 Y 1 B DA 2 ? OP2 ? B DA 2 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 1FJA _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FJA _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1FJA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1FJA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1FJA _struct.title 'NMR STUDY OF DEOXYRIBONUCLEIC ACID COMPLEXED WITH ACTINOMYCIN D' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FJA _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text 'ACTINOMYCIN D, ACTINOMYCIN, ANTI CANCER, ANTITUMOR, ANTIBIOTIC, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1FJA 1 ? ? 1FJA ? 2 NOR NOR00228 2 ? ? NOR00228 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FJA A 1 ? 8 ? 1FJA 1 ? 8 ? 1 8 2 1 1FJA B 1 ? 8 ? 1FJA 1 ? 8 ? 1 8 3 2 1FJA C 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 4 2 1FJA D 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C THR 1 C ? ? ? 1_555 C DVA 2 N ? ? C THR 1 C DVA 2 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale2 covale one ? C THR 1 OG1 ? ? ? 1_555 C MVA 5 C ? ? C THR 1 C MVA 5 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale3 covale both ? C THR 1 N ? ? ? 1_555 C PXZ 6 C0 ? ? C THR 1 C PXZ 6 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale4 covale both ? C DVA 2 C ? ? ? 1_555 C PRO 3 N ? ? C DVA 2 C PRO 3 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? C PRO 3 C ? ? ? 1_555 C SAR 4 N ? ? C PRO 3 C SAR 4 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? C SAR 4 C ? ? ? 1_555 C MVA 5 N ? ? C SAR 4 C MVA 5 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale7 covale both ? C PXZ 6 "C0'" ? ? ? 1_555 C THR 7 N ? ? C PXZ 6 C THR 7 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale8 covale both ? C THR 7 C ? ? ? 1_555 C DVA 8 N ? ? C THR 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale9 covale one ? C THR 7 OG1 ? ? ? 1_555 C MVA 11 C ? ? C THR 7 C MVA 11 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale10 covale both ? C DVA 8 C ? ? ? 1_555 C PRO 9 N ? ? C DVA 8 C PRO 9 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale11 covale both ? C PRO 9 C ? ? ? 1_555 C SAR 10 N ? ? C PRO 9 C SAR 10 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? C SAR 10 C ? ? ? 1_555 C MVA 11 N ? ? C SAR 10 C MVA 11 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? D THR 1 C ? ? ? 1_555 D DVA 2 N ? ? D THR 1 D DVA 2 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale14 covale one ? D THR 1 OG1 ? ? ? 1_555 D MVA 5 C ? ? D THR 1 D MVA 5 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale15 covale both ? D THR 1 N ? ? ? 1_555 D PXZ 6 C0 ? ? D THR 1 D PXZ 6 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale16 covale both ? D DVA 2 C ? ? ? 1_555 D PRO 3 N ? ? D DVA 2 D PRO 3 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? D PRO 3 C ? ? ? 1_555 D SAR 4 N ? ? D PRO 3 D SAR 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale18 covale both ? D SAR 4 C ? ? ? 1_555 D MVA 5 N ? ? D SAR 4 D MVA 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale19 covale both ? D PXZ 6 "C0'" ? ? ? 1_555 D THR 7 N ? ? D PXZ 6 D THR 7 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale20 covale both ? D THR 7 C ? ? ? 1_555 D DVA 8 N ? ? D THR 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale21 covale one ? D THR 7 OG1 ? ? ? 1_555 D MVA 11 C ? ? D THR 7 D MVA 11 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale22 covale both ? D DVA 8 C ? ? ? 1_555 D PRO 9 N ? ? D DVA 8 D PRO 9 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale23 covale both ? D PRO 9 C ? ? ? 1_555 D SAR 10 N ? ? D PRO 9 D SAR 10 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale24 covale both ? D SAR 10 C ? ? ? 1_555 D MVA 11 N ? ? D SAR 10 D MVA 11 1_555 ? ? ? ? ? ? ? 1.329 ? ? hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 2 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 2 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 7 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 7 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 SAR C 4 ? . . . . SAR C 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 2 MVA C 5 ? . . . . MVA C 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 SAR C 10 ? . . . . SAR C 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 4 MVA C 11 ? . . . . MVA C 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 5 SAR D 4 ? . . . . SAR D 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 6 MVA D 5 ? . . . . MVA D 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 7 SAR D 10 ? . . . . SAR D 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 8 MVA D 11 ? . . . . MVA D 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 9 PXZ C 6 ? . . . . PXZ C 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 10 PXZ D 6 ? . . . . PXZ D 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 11 THR C 1 ? MVA C 5 ? THR C 1 ? 1_555 MVA C 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 12 THR C 1 ? PXZ C 6 ? THR C 1 ? 1_555 PXZ C 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 13 THR C 7 ? MVA C 11 ? THR C 7 ? 1_555 MVA C 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' 14 THR D 1 ? MVA D 5 ? THR D 1 ? 1_555 MVA D 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 15 THR D 1 ? PXZ D 6 ? THR D 1 ? 1_555 PXZ D 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 16 THR D 7 ? MVA D 11 ? THR D 7 ? 1_555 MVA D 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 1 1.29 2 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 1 0.04 3 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 1 1.38 4 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 1 0.42 5 DVA 2 D . ? DVA 2 D PRO 3 D ? PRO 3 D 1 1.24 6 PRO 3 D . ? PRO 3 D SAR 4 D ? SAR 4 D 1 0.04 7 DVA 8 D . ? DVA 8 D PRO 9 D ? PRO 9 D 1 1.43 8 PRO 9 D . ? PRO 9 D SAR 10 D ? SAR 10 D 1 0.17 9 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 2 1.39 10 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 2 -0.28 11 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 2 1.30 12 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 2 0.11 13 DVA 2 D . ? DVA 2 D PRO 3 D ? PRO 3 D 2 1.33 14 PRO 3 D . ? PRO 3 D SAR 4 D ? SAR 4 D 2 -0.20 15 DVA 8 D . ? DVA 8 D PRO 9 D ? PRO 9 D 2 1.22 16 PRO 9 D . ? PRO 9 D SAR 10 D ? SAR 10 D 2 0.10 17 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 3 0.69 18 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 3 -0.07 19 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 3 1.65 20 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 3 0.11 21 DVA 2 D . ? DVA 2 D PRO 3 D ? PRO 3 D 3 1.06 22 PRO 3 D . ? PRO 3 D SAR 4 D ? SAR 4 D 3 -0.01 23 DVA 8 D . ? DVA 8 D PRO 9 D ? PRO 9 D 3 1.46 24 PRO 9 D . ? PRO 9 D SAR 10 D ? SAR 10 D 3 0.22 25 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 4 0.85 26 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 4 0.02 27 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 4 0.75 28 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 4 0.29 29 DVA 2 D . ? DVA 2 D PRO 3 D ? PRO 3 D 4 0.53 30 PRO 3 D . ? PRO 3 D SAR 4 D ? SAR 4 D 4 -0.01 31 DVA 8 D . ? DVA 8 D PRO 9 D ? PRO 9 D 4 0.78 32 PRO 9 D . ? PRO 9 D SAR 10 D ? SAR 10 D 4 0.32 33 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 5 0.81 34 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 5 0.03 35 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 5 0.75 36 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 5 0.57 37 DVA 2 D . ? DVA 2 D PRO 3 D ? PRO 3 D 5 0.81 38 PRO 3 D . ? PRO 3 D SAR 4 D ? SAR 4 D 5 0.11 39 DVA 8 D . ? DVA 8 D PRO 9 D ? PRO 9 D 5 0.83 40 PRO 9 D . ? PRO 9 D SAR 10 D ? SAR 10 D 5 0.48 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN C OF ACTINOMYCIN D' AC2 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN D OF ACTINOMYCIN D' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DA A 2 ? DA A 2 . ? 1_555 ? 2 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 9 DC A 4 ? DC A 4 . ? 1_555 ? 4 AC1 9 DG B 5 ? DG B 5 . ? 1_555 ? 5 AC1 9 DC B 6 ? DC B 6 . ? 1_555 ? 6 AC1 9 DT B 7 ? DT B 7 . ? 1_555 ? 7 AC1 9 PRO D 9 ? PRO D 9 . ? 1_555 ? 8 AC1 9 SAR D 10 ? SAR D 10 . ? 1_555 ? 9 AC1 9 MVA D 11 ? MVA D 11 . ? 1_555 ? 10 AC2 9 DG A 5 ? DG A 5 . ? 1_555 ? 11 AC2 9 DC A 6 ? DC A 6 . ? 1_555 ? 12 AC2 9 DT A 7 ? DT A 7 . ? 1_555 ? 13 AC2 9 DA B 2 ? DA B 2 . ? 1_555 ? 14 AC2 9 DG B 3 ? DG B 3 . ? 1_555 ? 15 AC2 9 DC B 4 ? DC B 4 . ? 1_555 ? 16 AC2 9 PRO C 9 ? PRO C 9 . ? 1_555 ? 17 AC2 9 SAR C 10 ? SAR C 10 . ? 1_555 ? 18 AC2 9 MVA C 11 ? MVA C 11 . ? 1_555 ? # _pdbx_entry_details.entry_id 1FJA _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 1.457 1.521 -0.064 0.010 N 2 1 "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 1.455 1.521 -0.066 0.010 N 3 2 "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 1.461 1.521 -0.060 0.010 N 4 3 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 1.455 1.521 -0.066 0.010 N 5 3 "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 1.454 1.521 -0.067 0.010 N 6 4 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 1.454 1.521 -0.067 0.010 N 7 4 "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 1.457 1.521 -0.064 0.010 N 8 5 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 1.458 1.521 -0.063 0.010 N 9 5 "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 1.458 1.521 -0.063 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 117.25 113.80 3.45 0.50 N 2 1 C8 A DA 2 ? ? N9 A DA 2 ? ? C4 A DA 2 ? ? 102.94 105.80 -2.86 0.40 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.18 108.30 3.88 0.30 N 4 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.46 113.10 4.36 0.50 N 5 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.51 106.40 -2.89 0.40 N 6 1 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 110.73 106.00 4.73 0.60 N 7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.50 108.30 2.20 0.30 N 8 1 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 117.14 113.10 4.04 0.50 N 9 1 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 103.81 106.40 -2.59 0.40 N 10 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.36 108.30 2.06 0.30 N 11 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.26 108.30 2.96 0.30 N 12 1 N7 B DA 2 ? ? C8 B DA 2 ? ? N9 B DA 2 ? ? 117.20 113.80 3.40 0.50 N 13 1 C8 B DA 2 ? ? N9 B DA 2 ? ? C4 B DA 2 ? ? 102.89 105.80 -2.91 0.40 N 14 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.18 108.30 3.88 0.30 N 15 1 N7 B DG 3 ? ? C8 B DG 3 ? ? N9 B DG 3 ? ? 117.44 113.10 4.34 0.50 N 16 1 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.49 106.40 -2.91 0.40 N 17 1 "O4'" B DC 4 ? ? "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 110.69 106.00 4.69 0.60 N 18 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 110.52 108.30 2.22 0.30 N 19 1 N7 B DG 5 ? ? C8 B DG 5 ? ? N9 B DG 5 ? ? 117.19 113.10 4.09 0.50 N 20 1 C8 B DG 5 ? ? N9 B DG 5 ? ? C4 B DG 5 ? ? 103.76 106.40 -2.64 0.40 N 21 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.24 108.30 1.94 0.30 N 22 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 111.38 108.30 3.08 0.30 N 23 2 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.45 108.30 3.15 0.30 N 24 2 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 117.27 113.80 3.47 0.50 N 25 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.15 108.30 4.85 0.30 N 26 2 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.27 113.10 4.17 0.50 N 27 2 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.79 106.40 -2.61 0.40 N 28 2 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 110.81 106.00 4.81 0.60 N 29 2 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 117.22 113.10 4.12 0.50 N 30 2 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 103.74 106.40 -2.66 0.40 N 31 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.03 108.30 2.73 0.30 N 32 2 "O4'" B DA 2 ? ? "C1'" B DA 2 ? ? N9 B DA 2 ? ? 111.64 108.30 3.34 0.30 N 33 2 N7 B DA 2 ? ? C8 B DA 2 ? ? N9 B DA 2 ? ? 117.44 113.80 3.64 0.50 N 34 2 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 113.07 108.30 4.77 0.30 N 35 2 N7 B DG 3 ? ? C8 B DG 3 ? ? N9 B DG 3 ? ? 117.25 113.10 4.15 0.50 N 36 2 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.87 106.40 -2.53 0.40 N 37 2 "O4'" B DC 4 ? ? "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 110.70 106.00 4.70 0.60 N 38 2 N7 B DG 5 ? ? C8 B DG 5 ? ? N9 B DG 5 ? ? 117.23 113.10 4.13 0.50 N 39 2 C8 B DG 5 ? ? N9 B DG 5 ? ? C4 B DG 5 ? ? 103.67 106.40 -2.73 0.40 N 40 2 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 110.95 108.30 2.65 0.30 N 41 3 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.07 108.30 2.77 0.30 N 42 3 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 117.37 113.80 3.57 0.50 N 43 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.90 108.30 5.60 0.30 N 44 3 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.64 113.10 4.54 0.50 N 45 3 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.20 106.40 -3.20 0.40 N 46 3 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 110.86 106.00 4.86 0.60 N 47 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.20 108.30 1.90 0.30 N 48 3 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 117.28 113.10 4.18 0.50 N 49 3 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 103.74 106.40 -2.66 0.40 N 50 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.12 108.30 1.82 0.30 N 51 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.29 108.30 2.99 0.30 N 52 3 "O4'" B DA 2 ? ? "C1'" B DA 2 ? ? N9 B DA 2 ? ? 111.04 108.30 2.74 0.30 N 53 3 N7 B DA 2 ? ? C8 B DA 2 ? ? N9 B DA 2 ? ? 117.31 113.80 3.51 0.50 N 54 3 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 113.79 108.30 5.49 0.30 N 55 3 N7 B DG 3 ? ? C8 B DG 3 ? ? N9 B DG 3 ? ? 117.68 113.10 4.58 0.50 N 56 3 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.12 106.40 -3.28 0.40 N 57 3 "O4'" B DC 4 ? ? "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 110.75 106.00 4.75 0.60 N 58 3 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 110.53 108.30 2.23 0.30 N 59 3 N7 B DG 5 ? ? C8 B DG 5 ? ? N9 B DG 5 ? ? 117.34 113.10 4.24 0.50 N 60 3 C8 B DG 5 ? ? N9 B DG 5 ? ? C4 B DG 5 ? ? 103.55 106.40 -2.85 0.40 N 61 3 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.13 108.30 1.83 0.30 N 62 3 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 111.21 108.30 2.91 0.30 N 63 4 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 117.24 113.80 3.44 0.50 N 64 4 C8 A DA 2 ? ? N9 A DA 2 ? ? C4 A DA 2 ? ? 103.03 105.80 -2.77 0.40 N 65 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.54 108.30 4.24 0.30 N 66 4 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.38 113.10 4.28 0.50 N 67 4 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.66 106.40 -2.74 0.40 N 68 4 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 110.80 106.00 4.80 0.60 N 69 4 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.52 108.30 2.22 0.30 N 70 4 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 117.42 113.10 4.32 0.50 N 71 4 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 103.52 106.40 -2.88 0.40 N 72 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.16 108.30 1.86 0.30 N 73 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.92 108.30 2.62 0.30 N 74 4 N7 B DA 2 ? ? C8 B DA 2 ? ? N9 B DA 2 ? ? 117.21 113.80 3.41 0.50 N 75 4 C8 B DA 2 ? ? N9 B DA 2 ? ? C4 B DA 2 ? ? 103.15 105.80 -2.65 0.40 N 76 4 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.47 108.30 4.17 0.30 N 77 4 N7 B DG 3 ? ? C8 B DG 3 ? ? N9 B DG 3 ? ? 117.44 113.10 4.34 0.50 N 78 4 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.58 106.40 -2.82 0.40 N 79 4 "O4'" B DC 4 ? ? "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 111.00 106.00 5.00 0.60 N 80 4 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 110.65 108.30 2.35 0.30 N 81 4 N7 B DG 5 ? ? C8 B DG 5 ? ? N9 B DG 5 ? ? 117.34 113.10 4.24 0.50 N 82 4 C8 B DG 5 ? ? N9 B DG 5 ? ? C4 B DG 5 ? ? 103.57 106.40 -2.83 0.40 N 83 4 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.40 108.30 2.10 0.30 N 84 4 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 111.09 108.30 2.79 0.30 N 85 5 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 117.04 113.80 3.24 0.50 N 86 5 C8 A DA 2 ? ? N9 A DA 2 ? ? C4 A DA 2 ? ? 103.19 105.80 -2.61 0.40 N 87 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.27 108.30 3.97 0.30 N 88 5 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.38 113.10 4.28 0.50 N 89 5 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.46 106.40 -2.94 0.40 N 90 5 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 110.95 106.00 4.95 0.60 N 91 5 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 117.52 113.10 4.42 0.50 N 92 5 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 103.34 106.40 -3.06 0.40 N 93 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.44 108.30 3.14 0.30 N 94 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.19 108.30 2.89 0.30 N 95 5 N7 B DA 2 ? ? C8 B DA 2 ? ? N9 B DA 2 ? ? 117.08 113.80 3.28 0.50 N 96 5 C8 B DA 2 ? ? N9 B DA 2 ? ? C4 B DA 2 ? ? 103.20 105.80 -2.60 0.40 N 97 5 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.32 108.30 4.02 0.30 N 98 5 N7 B DG 3 ? ? C8 B DG 3 ? ? N9 B DG 3 ? ? 117.38 113.10 4.28 0.50 N 99 5 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.52 106.40 -2.88 0.40 N 100 5 "O4'" B DC 4 ? ? "C4'" B DC 4 ? ? "C3'" B DC 4 ? ? 110.96 106.00 4.96 0.60 N 101 5 N7 B DG 5 ? ? C8 B DG 5 ? ? N9 B DG 5 ? ? 117.47 113.10 4.37 0.50 N 102 5 C8 B DG 5 ? ? N9 B DG 5 ? ? C4 B DG 5 ? ? 103.36 106.40 -3.04 0.40 N 103 5 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.41 108.30 3.11 0.30 N 104 5 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 111.03 108.30 2.73 0.30 N # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000001 C 2 PRD_000001 D # _pdbx_nmr_ensemble.entry_id 1FJA _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DA 1 ? A DA 1 2 1 Y 1 A DT 8 ? A DT 8 3 1 Y 1 B DA 1 ? B DA 1 4 1 Y 1 B DT 8 ? B DT 8 5 2 Y 1 A DA 1 ? A DA 1 6 2 Y 1 A DT 8 ? A DT 8 7 2 Y 1 B DA 1 ? B DA 1 8 2 Y 1 B DT 8 ? B DT 8 9 3 Y 1 A DA 1 ? A DA 1 10 3 Y 1 A DT 8 ? A DT 8 11 3 Y 1 B DA 1 ? B DA 1 12 3 Y 1 B DT 8 ? B DT 8 13 4 Y 1 A DA 1 ? A DA 1 14 4 Y 1 A DT 8 ? A DT 8 15 4 Y 1 B DA 1 ? B DA 1 16 4 Y 1 B DT 8 ? B DT 8 17 5 Y 1 A DA 1 ? A DA 1 18 5 Y 1 A DT 8 ? A DT 8 19 5 Y 1 B DA 1 ? B DA 1 20 5 Y 1 B DT 8 ? B DT 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 DVA N N N N 144 DVA CA C N R 145 DVA CB C N N 146 DVA CG1 C N N 147 DVA CG2 C N N 148 DVA C C N N 149 DVA O O N N 150 DVA OXT O N N 151 DVA H H N N 152 DVA H2 H N N 153 DVA HA H N N 154 DVA HB H N N 155 DVA HG11 H N N 156 DVA HG12 H N N 157 DVA HG13 H N N 158 DVA HG21 H N N 159 DVA HG22 H N N 160 DVA HG23 H N N 161 DVA HXT H N N 162 MVA N N N N 163 MVA CN C N N 164 MVA CA C N S 165 MVA CB C N N 166 MVA CG1 C N N 167 MVA CG2 C N N 168 MVA C C N N 169 MVA O O N N 170 MVA OXT O N N 171 MVA H H N N 172 MVA HN1 H N N 173 MVA HN2 H N N 174 MVA HN3 H N N 175 MVA HA H N N 176 MVA HB H N N 177 MVA HG11 H N N 178 MVA HG12 H N N 179 MVA HG13 H N N 180 MVA HG21 H N N 181 MVA HG22 H N N 182 MVA HG23 H N N 183 MVA HXT H N N 184 PRO N N N N 185 PRO CA C N S 186 PRO C C N N 187 PRO O O N N 188 PRO CB C N N 189 PRO CG C N N 190 PRO CD C N N 191 PRO OXT O N N 192 PRO H H N N 193 PRO HA H N N 194 PRO HB2 H N N 195 PRO HB3 H N N 196 PRO HG2 H N N 197 PRO HG3 H N N 198 PRO HD2 H N N 199 PRO HD3 H N N 200 PRO HXT H N N 201 PXZ C1 C N N 202 PXZ C0 C N N 203 PXZ O1 O N N 204 PXZ C2 C N N 205 PXZ N2 N N N 206 PXZ C3 C N N 207 PXZ O3 O N N 208 PXZ C4 C N N 209 PXZ O5 O N N 210 PXZ C6 C Y N 211 PXZ C7 C Y N 212 PXZ C8 C Y N 213 PXZ C9 C Y N 214 PXZ "C0'" C N N 215 PXZ "O1'" O N N 216 PXZ N10 N N N 217 PXZ C11 C N N 218 PXZ C12 C N N 219 PXZ C13 C Y N 220 PXZ C14 C Y N 221 PXZ C15 C N N 222 PXZ C16 C N N 223 PXZ HN21 H N N 224 PXZ HN22 H N N 225 PXZ H7 H N N 226 PXZ H8 H N N 227 PXZ H151 H N N 228 PXZ H152 H N N 229 PXZ H153 H N N 230 PXZ H161 H N N 231 PXZ H162 H N N 232 PXZ H163 H N N 233 PXZ "OXT'" O N N 234 PXZ OXT O N N 235 PXZ "HXT'" H N N 236 PXZ HXT H N N 237 SAR N N N N 238 SAR CA C N N 239 SAR C C N N 240 SAR O O N N 241 SAR CN C N N 242 SAR OXT O N N 243 SAR H H N N 244 SAR HA2 H N N 245 SAR HA3 H N N 246 SAR HN1 H N N 247 SAR HN2 H N N 248 SAR HN3 H N N 249 SAR HXT H N N 250 THR N N N N 251 THR CA C N S 252 THR C C N N 253 THR O O N N 254 THR CB C N R 255 THR OG1 O N N 256 THR CG2 C N N 257 THR OXT O N N 258 THR H H N N 259 THR H2 H N N 260 THR HA H N N 261 THR HB H N N 262 THR HG1 H N N 263 THR HG21 H N N 264 THR HG22 H N N 265 THR HG23 H N N 266 THR HXT H N N 267 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 DVA N CA sing N N 150 DVA N H sing N N 151 DVA N H2 sing N N 152 DVA CA CB sing N N 153 DVA CA C sing N N 154 DVA CA HA sing N N 155 DVA CB CG1 sing N N 156 DVA CB CG2 sing N N 157 DVA CB HB sing N N 158 DVA CG1 HG11 sing N N 159 DVA CG1 HG12 sing N N 160 DVA CG1 HG13 sing N N 161 DVA CG2 HG21 sing N N 162 DVA CG2 HG22 sing N N 163 DVA CG2 HG23 sing N N 164 DVA C O doub N N 165 DVA C OXT sing N N 166 DVA OXT HXT sing N N 167 MVA N CN sing N N 168 MVA N CA sing N N 169 MVA N H sing N N 170 MVA CN HN1 sing N N 171 MVA CN HN2 sing N N 172 MVA CN HN3 sing N N 173 MVA CA CB sing N N 174 MVA CA C sing N N 175 MVA CA HA sing N N 176 MVA CB CG1 sing N N 177 MVA CB CG2 sing N N 178 MVA CB HB sing N N 179 MVA CG1 HG11 sing N N 180 MVA CG1 HG12 sing N N 181 MVA CG1 HG13 sing N N 182 MVA CG2 HG21 sing N N 183 MVA CG2 HG22 sing N N 184 MVA CG2 HG23 sing N N 185 MVA C O doub N N 186 MVA C OXT sing N N 187 MVA OXT HXT sing N N 188 PRO N CA sing N N 189 PRO N CD sing N N 190 PRO N H sing N N 191 PRO CA C sing N N 192 PRO CA CB sing N N 193 PRO CA HA sing N N 194 PRO C O doub N N 195 PRO C OXT sing N N 196 PRO CB CG sing N N 197 PRO CB HB2 sing N N 198 PRO CB HB3 sing N N 199 PRO CG CD sing N N 200 PRO CG HG2 sing N N 201 PRO CG HG3 sing N N 202 PRO CD HD2 sing N N 203 PRO CD HD3 sing N N 204 PRO OXT HXT sing N N 205 PXZ C1 C0 sing N N 206 PXZ C1 C2 doub N N 207 PXZ C1 C11 sing N N 208 PXZ C0 O1 doub N N 209 PXZ C2 N2 sing N N 210 PXZ C2 C3 sing N N 211 PXZ N2 HN21 sing N N 212 PXZ N2 HN22 sing N N 213 PXZ C3 O3 doub N N 214 PXZ C3 C4 sing N N 215 PXZ C4 C12 doub N N 216 PXZ C4 C15 sing N N 217 PXZ O5 C12 sing N N 218 PXZ O5 C13 sing N N 219 PXZ C6 C7 doub Y N 220 PXZ C6 C13 sing Y N 221 PXZ C6 C16 sing N N 222 PXZ C7 C8 sing Y N 223 PXZ C7 H7 sing N N 224 PXZ C8 C9 doub Y N 225 PXZ C8 H8 sing N N 226 PXZ C9 "C0'" sing N N 227 PXZ C9 C14 sing Y N 228 PXZ "C0'" "O1'" doub N N 229 PXZ N10 C11 doub N N 230 PXZ N10 C14 sing N N 231 PXZ C11 C12 sing N N 232 PXZ C13 C14 doub Y N 233 PXZ C15 H151 sing N N 234 PXZ C15 H152 sing N N 235 PXZ C15 H153 sing N N 236 PXZ C16 H161 sing N N 237 PXZ C16 H162 sing N N 238 PXZ C16 H163 sing N N 239 PXZ "C0'" "OXT'" sing N N 240 PXZ C0 OXT sing N N 241 PXZ "OXT'" "HXT'" sing N N 242 PXZ OXT HXT sing N N 243 SAR N CA sing N N 244 SAR N CN sing N N 245 SAR N H sing N N 246 SAR CA C sing N N 247 SAR CA HA2 sing N N 248 SAR CA HA3 sing N N 249 SAR C O doub N N 250 SAR C OXT sing N N 251 SAR CN HN1 sing N N 252 SAR CN HN2 sing N N 253 SAR CN HN3 sing N N 254 SAR OXT HXT sing N N 255 THR N CA sing N N 256 THR N H sing N N 257 THR N H2 sing N N 258 THR CA C sing N N 259 THR CA CB sing N N 260 THR CA HA sing N N 261 THR C O doub N N 262 THR C OXT sing N N 263 THR CB OG1 sing N N 264 THR CB CG2 sing N N 265 THR CB HB sing N N 266 THR OG1 HG1 sing N N 267 THR CG2 HG21 sing N N 268 THR CG2 HG22 sing N N 269 THR CG2 HG23 sing N N 270 THR OXT HXT sing N N 271 # _ndb_struct_conf_na.entry_id 1FJA _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 7 1_555 0.348 -0.156 -0.392 -6.396 -8.975 1.120 1 A_DA2:DT7_B A 2 ? B 7 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 -1.015 -0.414 0.375 13.995 8.706 -1.359 2 A_DG3:DC6_B A 3 ? B 6 ? 19 1 1 A DC 4 1_555 B DG 5 1_555 0.786 -0.291 0.516 -11.323 15.149 1.874 3 A_DC4:DG5_B A 4 ? B 5 ? 19 1 1 A DG 5 1_555 B DC 4 1_555 -0.784 -0.295 0.533 10.929 14.453 1.809 4 A_DG5:DC4_B A 5 ? B 4 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 0.984 -0.397 0.379 -14.029 7.689 -1.393 5 A_DC6:DG3_B A 6 ? B 3 ? 19 1 1 A DT 7 1_555 B DA 2 1_555 -0.360 -0.154 -0.376 8.762 -7.280 1.232 6 A_DT7:DA2_B A 7 ? B 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 7 1_555 A DG 3 1_555 B DC 6 1_555 0.145 1.228 2.874 -7.659 14.517 14.015 -2.704 -3.549 2.647 44.021 23.225 21.552 1 AA_DA2DG3:DC6DT7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DC 4 1_555 B DG 5 1_555 A DG 5 1_555 B DC 4 1_555 -0.027 0.521 3.008 0.247 23.745 -7.052 -7.070 -0.002 0.364 -73.691 0.766 -24.757 2 AA_DC4DG5:DC4DG5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DC 6 1_555 B DG 3 1_555 A DT 7 1_555 B DA 2 1_555 -0.104 1.219 2.793 7.087 13.501 14.205 -2.413 3.327 2.664 41.853 -21.972 20.811 3 AA_DC6DT7:DA2DG3_BB A 6 ? B 3 ? A 7 ? B 2 ? # _atom_sites.entry_id 1FJA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_