data_1FMS # _entry.id 1FMS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FMS pdb_00001fms 10.2210/pdb1fms/pdb NDB DD0035 ? ? RCSB RCSB011720 ? ? WWPDB D_1000011720 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-09-11 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.value' 6 5 'Structure model' '_struct_conn.pdbx_dist_value' 7 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FMS _pdbx_database_status.recvd_initial_deposition_date 2000-08-18 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name NDB _pdbx_database_related.db_id DD0034 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Simpson, I.J.' 1 'Lee, M.' 2 'Kumar, A.' 3 'Boykin, D.W.' 4 'Neidle, S.' 5 # _citation.id primary _citation.title 'DNA minor groove interactions and the biological activity of 2,5-bis-[4-(N-alkylamidino)phenyl] furans' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 10 _citation.page_first 2593 _citation.page_last 2597 _citation.year 2000 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11128631 _citation.pdbx_database_id_DOI '10.1016/S0960-894X(00)00511-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Simpson, I.J.' 1 ? primary 'Lee, M.' 2 ? primary 'Kumar, A.' 3 ? primary 'Boykin, D.W.' 4 ? primary 'Neidle, S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn '2,5-BIS{[4-(N-CYCLOHEXYLDIAMINOMETHYL)PHENYL]}FURAN' 472.665 1 ? ? ? ? 4 water nat water 18.015 187 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 '2,5-BIS{[4-(N-CYCLOHEXYLDIAMINOMETHYL)PHENYL]}FURAN' D35 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight D35 non-polymer . '2,5-BIS{[4-(N-CYCLOHEXYLDIAMINOMETHYL)PHENYL]}FURAN' ? 'C30 H40 N4 O' 472.665 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO6 A . D 3 D35 1 25 25 D35 D35 A . E 4 HOH 1 27 27 HOH HOH A . E 4 HOH 2 28 28 HOH HOH A . E 4 HOH 3 30 30 HOH HOH A . E 4 HOH 4 32 32 HOH HOH A . E 4 HOH 5 33 33 HOH HOH A . E 4 HOH 6 34 34 HOH HOH A . E 4 HOH 7 35 35 HOH HOH A . E 4 HOH 8 38 38 HOH HOH A . E 4 HOH 9 39 39 HOH HOH A . E 4 HOH 10 40 40 HOH HOH A . E 4 HOH 11 44 44 HOH HOH A . E 4 HOH 12 46 46 HOH HOH A . E 4 HOH 13 48 48 HOH HOH A . E 4 HOH 14 49 49 HOH HOH A . E 4 HOH 15 50 50 HOH HOH A . E 4 HOH 16 51 51 HOH HOH A . E 4 HOH 17 52 52 HOH HOH A . E 4 HOH 18 53 53 HOH HOH A . E 4 HOH 19 55 55 HOH HOH A . E 4 HOH 20 56 56 HOH HOH A . E 4 HOH 21 57 57 HOH HOH A . E 4 HOH 22 59 59 HOH HOH A . E 4 HOH 23 64 64 HOH HOH A . E 4 HOH 24 68 68 HOH HOH A . E 4 HOH 25 74 74 HOH HOH A . E 4 HOH 26 75 75 HOH HOH A . E 4 HOH 27 76 76 HOH HOH A . E 4 HOH 28 78 78 HOH HOH A . E 4 HOH 29 79 79 HOH HOH A . E 4 HOH 30 80 80 HOH HOH A . E 4 HOH 31 81 81 HOH HOH A . E 4 HOH 32 84 84 HOH HOH A . E 4 HOH 33 89 89 HOH HOH A . E 4 HOH 34 90 90 HOH HOH A . E 4 HOH 35 91 91 HOH HOH A . E 4 HOH 36 92 92 HOH HOH A . E 4 HOH 37 93 93 HOH HOH A . E 4 HOH 38 94 94 HOH HOH A . E 4 HOH 39 95 95 HOH HOH A . E 4 HOH 40 98 98 HOH HOH A . E 4 HOH 41 103 103 HOH HOH A . E 4 HOH 42 106 106 HOH HOH A . E 4 HOH 43 108 108 HOH HOH A . E 4 HOH 44 109 109 HOH HOH A . E 4 HOH 45 110 110 HOH HOH A . E 4 HOH 46 111 111 HOH HOH A . E 4 HOH 47 113 113 HOH HOH A . E 4 HOH 48 114 114 HOH HOH A . E 4 HOH 49 117 117 HOH HOH A . E 4 HOH 50 122 122 HOH HOH A . E 4 HOH 51 124 124 HOH HOH A . E 4 HOH 52 125 125 HOH HOH A . E 4 HOH 53 126 126 HOH HOH A . E 4 HOH 54 127 127 HOH HOH A . E 4 HOH 55 129 129 HOH HOH A . E 4 HOH 56 130 130 HOH HOH A . E 4 HOH 57 133 133 HOH HOH A . E 4 HOH 58 136 136 HOH HOH A . E 4 HOH 59 139 139 HOH HOH A . E 4 HOH 60 141 141 HOH HOH A . E 4 HOH 61 143 143 HOH HOH A . E 4 HOH 62 144 144 HOH HOH A . E 4 HOH 63 146 146 HOH HOH A . E 4 HOH 64 150 150 HOH HOH A . E 4 HOH 65 153 153 HOH HOH A . E 4 HOH 66 154 154 HOH HOH A . E 4 HOH 67 157 157 HOH HOH A . E 4 HOH 68 161 161 HOH HOH A . E 4 HOH 69 162 162 HOH HOH A . E 4 HOH 70 165 165 HOH HOH A . E 4 HOH 71 166 166 HOH HOH A . E 4 HOH 72 170 170 HOH HOH A . E 4 HOH 73 173 173 HOH HOH A . E 4 HOH 74 176 176 HOH HOH A . E 4 HOH 75 177 177 HOH HOH A . E 4 HOH 76 179 179 HOH HOH A . E 4 HOH 77 181 181 HOH HOH A . E 4 HOH 78 182 182 HOH HOH A . E 4 HOH 79 183 183 HOH HOH A . E 4 HOH 80 187 187 HOH HOH A . E 4 HOH 81 190 190 HOH HOH A . E 4 HOH 82 191 191 HOH HOH A . E 4 HOH 83 192 192 HOH HOH A . E 4 HOH 84 197 197 HOH HOH A . E 4 HOH 85 200 200 HOH HOH A . E 4 HOH 86 202 202 HOH HOH A . E 4 HOH 87 203 203 HOH HOH A . E 4 HOH 88 206 206 HOH HOH A . E 4 HOH 89 207 207 HOH HOH A . E 4 HOH 90 209 209 HOH HOH A . E 4 HOH 91 212 212 HOH HOH A . E 4 HOH 92 217 217 HOH HOH A . E 4 HOH 93 221 26 HOH MO6 A . E 4 HOH 94 222 26 HOH MO6 A . E 4 HOH 95 223 26 HOH MO6 A . E 4 HOH 96 224 26 HOH MO6 A . E 4 HOH 97 225 26 HOH MO6 A . E 4 HOH 98 226 26 HOH MO6 A . F 4 HOH 1 29 29 HOH HOH B . F 4 HOH 2 31 31 HOH HOH B . F 4 HOH 3 36 36 HOH HOH B . F 4 HOH 4 37 37 HOH HOH B . F 4 HOH 5 41 41 HOH HOH B . F 4 HOH 6 42 42 HOH HOH B . F 4 HOH 7 43 43 HOH HOH B . F 4 HOH 8 45 45 HOH HOH B . F 4 HOH 9 47 47 HOH HOH B . F 4 HOH 10 54 54 HOH HOH B . F 4 HOH 11 58 58 HOH HOH B . F 4 HOH 12 60 60 HOH HOH B . F 4 HOH 13 61 61 HOH HOH B . F 4 HOH 14 62 62 HOH HOH B . F 4 HOH 15 63 63 HOH HOH B . F 4 HOH 16 65 65 HOH HOH B . F 4 HOH 17 66 66 HOH HOH B . F 4 HOH 18 67 67 HOH HOH B . F 4 HOH 19 69 69 HOH HOH B . F 4 HOH 20 70 70 HOH HOH B . F 4 HOH 21 71 71 HOH HOH B . F 4 HOH 22 72 72 HOH HOH B . F 4 HOH 23 73 73 HOH HOH B . F 4 HOH 24 77 77 HOH HOH B . F 4 HOH 25 82 82 HOH HOH B . F 4 HOH 26 83 83 HOH HOH B . F 4 HOH 27 85 85 HOH HOH B . F 4 HOH 28 86 86 HOH HOH B . F 4 HOH 29 87 87 HOH HOH B . F 4 HOH 30 88 88 HOH HOH B . F 4 HOH 31 96 96 HOH HOH B . F 4 HOH 32 97 97 HOH HOH B . F 4 HOH 33 99 99 HOH HOH B . F 4 HOH 34 100 100 HOH HOH B . F 4 HOH 35 101 101 HOH HOH B . F 4 HOH 36 102 102 HOH HOH B . F 4 HOH 37 104 104 HOH HOH B . F 4 HOH 38 105 105 HOH HOH B . F 4 HOH 39 107 107 HOH HOH B . F 4 HOH 40 112 112 HOH HOH B . F 4 HOH 41 115 115 HOH HOH B . F 4 HOH 42 116 116 HOH HOH B . F 4 HOH 43 118 118 HOH HOH B . F 4 HOH 44 119 119 HOH HOH B . F 4 HOH 45 120 120 HOH HOH B . F 4 HOH 46 121 121 HOH HOH B . F 4 HOH 47 123 123 HOH HOH B . F 4 HOH 48 128 128 HOH HOH B . F 4 HOH 49 131 131 HOH HOH B . F 4 HOH 50 132 132 HOH HOH B . F 4 HOH 51 134 134 HOH HOH B . F 4 HOH 52 135 135 HOH HOH B . F 4 HOH 53 137 137 HOH HOH B . F 4 HOH 54 138 138 HOH HOH B . F 4 HOH 55 140 140 HOH HOH B . F 4 HOH 56 142 142 HOH HOH B . F 4 HOH 57 145 145 HOH HOH B . F 4 HOH 58 147 147 HOH HOH B . F 4 HOH 59 148 148 HOH HOH B . F 4 HOH 60 149 149 HOH HOH B . F 4 HOH 61 151 151 HOH HOH B . F 4 HOH 62 152 152 HOH HOH B . F 4 HOH 63 155 155 HOH HOH B . F 4 HOH 64 156 156 HOH HOH B . F 4 HOH 65 158 158 HOH HOH B . F 4 HOH 66 159 159 HOH HOH B . F 4 HOH 67 160 160 HOH HOH B . F 4 HOH 68 163 163 HOH HOH B . F 4 HOH 69 164 164 HOH HOH B . F 4 HOH 70 167 167 HOH HOH B . F 4 HOH 71 168 168 HOH HOH B . F 4 HOH 72 169 169 HOH HOH B . F 4 HOH 73 172 172 HOH HOH B . F 4 HOH 74 174 174 HOH HOH B . F 4 HOH 75 175 175 HOH HOH B . F 4 HOH 76 178 178 HOH HOH B . F 4 HOH 77 180 180 HOH HOH B . F 4 HOH 78 184 184 HOH HOH B . F 4 HOH 79 185 185 HOH HOH B . F 4 HOH 80 186 186 HOH HOH B . F 4 HOH 81 188 188 HOH HOH B . F 4 HOH 82 193 193 HOH HOH B . F 4 HOH 83 196 196 HOH HOH B . F 4 HOH 84 198 198 HOH HOH B . F 4 HOH 85 204 204 HOH HOH B . F 4 HOH 86 210 210 HOH HOH B . F 4 HOH 87 218 218 HOH HOH B . F 4 HOH 88 219 219 HOH HOH B . F 4 HOH 89 220 220 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCALEPACK 'data scaling' . ? 1 X-PLOR 'model building' . ? 2 SHELXL-97 refinement . ? 3 X-PLOR phasing . ? 4 # _cell.entry_id 1FMS _cell.length_a 25.567 _cell.length_b 40.236 _cell.length_c 65.567 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FMS _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1FMS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.22 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;MgCl2 2ul 100mM, Spermine 1ul 10mM, Oligonucleotide 2ul 2mM, Drug 2ul 3mM, MPD 3ul 30% v/v, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 Spermine ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FMS _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 10. _reflns.d_resolution_high 1.9 _reflns.number_obs 5492 _reflns.number_all 5750 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1FMS _refine.ls_number_reflns_obs 5492 _refine.ls_number_reflns_all 5750 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10. _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 95.5 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all 0.208 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.28 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 275 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Parkinson et al.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 709 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 10. # _database_PDB_matrix.entry_id 1FMS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1FMS _struct.title 'Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FMS _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA-drug minor groove complex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1FMS _struct_ref.pdbx_db_accession 1FMS _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FMS A 1 ? 12 ? 1FMS 1 ? 12 ? 1 12 2 1 1FMS B 1 ? 12 ? 1FMS 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 221 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 222 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 223 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 224 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 225 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 226 1_555 ? ? ? ? ? ? ? 2.029 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 222 ? 1_555 90.0 ? 2 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 223 ? 1_555 179.2 ? 3 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 223 ? 1_555 89.4 ? 4 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 224 ? 1_555 90.3 ? 5 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 224 ? 1_555 178.5 ? 6 O ? E HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 224 ? 1_555 90.4 ? 7 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 89.8 ? 8 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 87.6 ? 9 O ? E HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 90.6 ? 10 O ? E HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 90.9 ? 11 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 89.5 ? 12 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 90.2 ? 13 O ? E HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 90.1 ? 14 O ? E HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 91.2 ? 15 O ? E HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 177.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' AC2 Software A D35 25 ? 13 'BINDING SITE FOR RESIDUE D35 A 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH A 221 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 222 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 223 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 224 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 225 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 226 . ? 1_555 ? 7 AC2 13 DA A 6 ? DA A 6 . ? 1_555 ? 8 AC2 13 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC2 13 DT A 8 ? DT A 8 . ? 1_555 ? 10 AC2 13 DC A 9 ? DC A 9 . ? 1_555 ? 11 AC2 13 DG A 10 ? DG A 10 . ? 1_555 ? 12 AC2 13 HOH E . ? HOH A 44 . ? 1_555 ? 13 AC2 13 HOH E . ? HOH A 80 . ? 1_555 ? 14 AC2 13 HOH E . ? HOH A 209 . ? 1_555 ? 15 AC2 13 DA B 6 ? DA B 18 . ? 1_555 ? 16 AC2 13 DT B 7 ? DT B 19 . ? 1_555 ? 17 AC2 13 DT B 8 ? DT B 20 . ? 1_555 ? 18 AC2 13 DC B 9 ? DC B 21 . ? 1_555 ? 19 AC2 13 HOH F . ? HOH B 71 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 101.22 108.00 -6.78 0.70 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 102.11 108.00 -5.89 0.70 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 99.58 108.00 -8.42 0.70 N 4 1 C6 A DC 3 ? ? N1 A DC 3 ? ? "C1'" A DC 3 ? ? 128.79 120.80 7.99 1.20 N 5 1 C2 A DC 3 ? ? N1 A DC 3 ? ? "C1'" A DC 3 ? ? 111.05 118.80 -7.75 1.10 N 6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 101.02 108.00 -6.98 0.70 N 7 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 101.00 108.00 -7.00 0.70 N 8 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 96.36 108.00 -11.64 0.70 N 9 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 97.30 108.00 -10.70 0.70 N 10 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 97.94 108.00 -10.06 0.70 N 11 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.56 119.90 3.66 0.60 N 12 1 N1 A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 124.01 114.30 9.71 1.40 N 13 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 98.76 108.00 -9.24 0.70 N 14 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 100.98 108.00 -7.02 0.70 N 15 1 C5 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 125.00 128.60 -3.60 0.60 N 16 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 84.00 109.40 -25.40 0.80 N 17 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 98.87 108.00 -9.13 0.70 N 18 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 102.18 108.00 -5.82 0.70 N 19 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 98.04 108.00 -9.96 0.70 N 20 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 101.84 108.00 -6.16 0.70 N 21 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 100.89 108.00 -7.11 0.70 N 22 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 97.65 108.00 -10.35 0.70 N 23 1 N1 B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 122.93 114.30 8.63 1.40 N 24 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 95.38 108.00 -12.62 0.70 N 25 1 N1 B DC 21 ? ? "C1'" B DC 21 ? ? "C2'" B DC 21 ? ? 123.67 114.30 9.37 1.40 N 26 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 97.68 108.00 -10.32 0.70 N 27 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 124.73 128.60 -3.87 0.60 N 28 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 97.42 108.00 -10.58 0.70 N 29 1 C2 B DC 23 ? ? N1 B DC 23 ? ? "C1'" B DC 23 ? ? 112.18 118.80 -6.62 1.10 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C7 ? A D35 25 ? PLANAR . 2 1 "C7'" ? A D35 25 ? PLANAR . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal D35 C7 C N S 1 D35 N2 N N N 2 D35 N1 N N N 3 D35 C8 C N N 4 D35 C9 C N N 5 D35 C10 C N N 6 D35 C11 C N N 7 D35 C12 C N N 8 D35 C13 C N N 9 D35 C1 C Y N 10 D35 C2 C Y N 11 D35 C3 C Y N 12 D35 C4 C Y N 13 D35 C5 C Y N 14 D35 C6 C Y N 15 D35 CA C Y N 16 D35 O1 O Y N 17 D35 CB C Y N 18 D35 "CB'" C Y N 19 D35 "CA'" C Y N 20 D35 "C1'" C Y N 21 D35 "C2'" C Y N 22 D35 "C3'" C Y N 23 D35 "C4'" C Y N 24 D35 "C5'" C Y N 25 D35 "C6'" C Y N 26 D35 "C7'" C N R 27 D35 "N2'" N N N 28 D35 "N1'" N N N 29 D35 "C8'" C N N 30 D35 "C9'" C N N 31 D35 CAX C N N 32 D35 CBX C N N 33 D35 CCX C N N 34 D35 CDX C N N 35 D35 H77 H N N 36 D35 HN2 H N N 37 D35 HN1 H N N 38 D35 HN2A H N N 39 D35 H8 H N N 40 D35 H91 H N N 41 D35 H92 H N N 42 D35 H01 H N N 43 D35 H02 H N N 44 D35 H11 H N N 45 D35 H12 H N N 46 D35 H21 H N N 47 D35 H22 H N N 48 D35 H31 H N N 49 D35 H32 H N N 50 D35 H2 H N N 51 D35 H3 H N N 52 D35 H5 H N N 53 D35 H6 H N N 54 D35 HB H N N 55 D35 "HB'" H N N 56 D35 "H2'" H N N 57 D35 "H3'" H N N 58 D35 "H5'" H N N 59 D35 "H6'" H N N 60 D35 H7B H N N 61 D35 "HN2'" H N N 62 D35 "HN'1" H N N 63 D35 "HN'2" H N N 64 D35 "H8'" H N N 65 D35 "H9'1" H N N 66 D35 "H9'2" H N N 67 D35 "H0'1" H N N 68 D35 "H0'2" H N N 69 D35 "H1'1" H N N 70 D35 "H1'2" H N N 71 D35 "H2'1" H N N 72 D35 "H2'2" H N N 73 D35 "H3'1" H N N 74 D35 "H3'2" H N N 75 DA OP3 O N N 76 DA P P N N 77 DA OP1 O N N 78 DA OP2 O N N 79 DA "O5'" O N N 80 DA "C5'" C N N 81 DA "C4'" C N R 82 DA "O4'" O N N 83 DA "C3'" C N S 84 DA "O3'" O N N 85 DA "C2'" C N N 86 DA "C1'" C N R 87 DA N9 N Y N 88 DA C8 C Y N 89 DA N7 N Y N 90 DA C5 C Y N 91 DA C6 C Y N 92 DA N6 N N N 93 DA N1 N Y N 94 DA C2 C Y N 95 DA N3 N Y N 96 DA C4 C Y N 97 DA HOP3 H N N 98 DA HOP2 H N N 99 DA "H5'" H N N 100 DA "H5''" H N N 101 DA "H4'" H N N 102 DA "H3'" H N N 103 DA "HO3'" H N N 104 DA "H2'" H N N 105 DA "H2''" H N N 106 DA "H1'" H N N 107 DA H8 H N N 108 DA H61 H N N 109 DA H62 H N N 110 DA H2 H N N 111 DC OP3 O N N 112 DC P P N N 113 DC OP1 O N N 114 DC OP2 O N N 115 DC "O5'" O N N 116 DC "C5'" C N N 117 DC "C4'" C N R 118 DC "O4'" O N N 119 DC "C3'" C N S 120 DC "O3'" O N N 121 DC "C2'" C N N 122 DC "C1'" C N R 123 DC N1 N N N 124 DC C2 C N N 125 DC O2 O N N 126 DC N3 N N N 127 DC C4 C N N 128 DC N4 N N N 129 DC C5 C N N 130 DC C6 C N N 131 DC HOP3 H N N 132 DC HOP2 H N N 133 DC "H5'" H N N 134 DC "H5''" H N N 135 DC "H4'" H N N 136 DC "H3'" H N N 137 DC "HO3'" H N N 138 DC "H2'" H N N 139 DC "H2''" H N N 140 DC "H1'" H N N 141 DC H41 H N N 142 DC H42 H N N 143 DC H5 H N N 144 DC H6 H N N 145 DG OP3 O N N 146 DG P P N N 147 DG OP1 O N N 148 DG OP2 O N N 149 DG "O5'" O N N 150 DG "C5'" C N N 151 DG "C4'" C N R 152 DG "O4'" O N N 153 DG "C3'" C N S 154 DG "O3'" O N N 155 DG "C2'" C N N 156 DG "C1'" C N R 157 DG N9 N Y N 158 DG C8 C Y N 159 DG N7 N Y N 160 DG C5 C Y N 161 DG C6 C N N 162 DG O6 O N N 163 DG N1 N N N 164 DG C2 C N N 165 DG N2 N N N 166 DG N3 N N N 167 DG C4 C Y N 168 DG HOP3 H N N 169 DG HOP2 H N N 170 DG "H5'" H N N 171 DG "H5''" H N N 172 DG "H4'" H N N 173 DG "H3'" H N N 174 DG "HO3'" H N N 175 DG "H2'" H N N 176 DG "H2''" H N N 177 DG "H1'" H N N 178 DG H8 H N N 179 DG H1 H N N 180 DG H21 H N N 181 DG H22 H N N 182 DT OP3 O N N 183 DT P P N N 184 DT OP1 O N N 185 DT OP2 O N N 186 DT "O5'" O N N 187 DT "C5'" C N N 188 DT "C4'" C N R 189 DT "O4'" O N N 190 DT "C3'" C N S 191 DT "O3'" O N N 192 DT "C2'" C N N 193 DT "C1'" C N R 194 DT N1 N N N 195 DT C2 C N N 196 DT O2 O N N 197 DT N3 N N N 198 DT C4 C N N 199 DT O4 O N N 200 DT C5 C N N 201 DT C7 C N N 202 DT C6 C N N 203 DT HOP3 H N N 204 DT HOP2 H N N 205 DT "H5'" H N N 206 DT "H5''" H N N 207 DT "H4'" H N N 208 DT "H3'" H N N 209 DT "HO3'" H N N 210 DT "H2'" H N N 211 DT "H2''" H N N 212 DT "H1'" H N N 213 DT H3 H N N 214 DT H71 H N N 215 DT H72 H N N 216 DT H73 H N N 217 DT H6 H N N 218 HOH O O N N 219 HOH H1 H N N 220 HOH H2 H N N 221 MG MG MG N N 222 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D35 C7 N2 sing N N 1 D35 C7 N1 sing N N 2 D35 C7 C4 sing N N 3 D35 C7 H77 sing N N 4 D35 N2 C8 sing N N 5 D35 N2 HN2 sing N N 6 D35 N1 HN1 sing N N 7 D35 N1 HN2A sing N N 8 D35 C8 C9 sing N N 9 D35 C8 C13 sing N N 10 D35 C8 H8 sing N N 11 D35 C9 C10 sing N N 12 D35 C9 H91 sing N N 13 D35 C9 H92 sing N N 14 D35 C10 C11 sing N N 15 D35 C10 H01 sing N N 16 D35 C10 H02 sing N N 17 D35 C11 C12 sing N N 18 D35 C11 H11 sing N N 19 D35 C11 H12 sing N N 20 D35 C12 C13 sing N N 21 D35 C12 H21 sing N N 22 D35 C12 H22 sing N N 23 D35 C13 H31 sing N N 24 D35 C13 H32 sing N N 25 D35 C1 C2 doub Y N 26 D35 C1 C6 sing Y N 27 D35 C1 CA sing Y N 28 D35 C2 C3 sing Y N 29 D35 C2 H2 sing N N 30 D35 C3 C4 doub Y N 31 D35 C3 H3 sing N N 32 D35 C4 C5 sing Y N 33 D35 C5 C6 doub Y N 34 D35 C5 H5 sing N N 35 D35 C6 H6 sing N N 36 D35 CA O1 sing Y N 37 D35 CA CB doub Y N 38 D35 O1 "CA'" sing Y N 39 D35 CB "CB'" sing Y N 40 D35 CB HB sing N N 41 D35 "CB'" "CA'" doub Y N 42 D35 "CB'" "HB'" sing N N 43 D35 "CA'" "C1'" sing Y N 44 D35 "C1'" "C2'" doub Y N 45 D35 "C1'" "C6'" sing Y N 46 D35 "C2'" "C3'" sing Y N 47 D35 "C2'" "H2'" sing N N 48 D35 "C3'" "C4'" doub Y N 49 D35 "C3'" "H3'" sing N N 50 D35 "C4'" "C5'" sing Y N 51 D35 "C4'" "C7'" sing N N 52 D35 "C5'" "C6'" doub Y N 53 D35 "C5'" "H5'" sing N N 54 D35 "C6'" "H6'" sing N N 55 D35 "C7'" "N2'" sing N N 56 D35 "C7'" "N1'" sing N N 57 D35 "C7'" H7B sing N N 58 D35 "N2'" "C8'" sing N N 59 D35 "N2'" "HN2'" sing N N 60 D35 "N1'" "HN'1" sing N N 61 D35 "N1'" "HN'2" sing N N 62 D35 "C8'" "C9'" sing N N 63 D35 "C8'" CDX sing N N 64 D35 "C8'" "H8'" sing N N 65 D35 "C9'" CAX sing N N 66 D35 "C9'" "H9'1" sing N N 67 D35 "C9'" "H9'2" sing N N 68 D35 CAX CBX sing N N 69 D35 CAX "H0'1" sing N N 70 D35 CAX "H0'2" sing N N 71 D35 CBX CCX sing N N 72 D35 CBX "H1'1" sing N N 73 D35 CBX "H1'2" sing N N 74 D35 CCX CDX sing N N 75 D35 CCX "H2'1" sing N N 76 D35 CCX "H2'2" sing N N 77 D35 CDX "H3'1" sing N N 78 D35 CDX "H3'2" sing N N 79 DA OP3 P sing N N 80 DA OP3 HOP3 sing N N 81 DA P OP1 doub N N 82 DA P OP2 sing N N 83 DA P "O5'" sing N N 84 DA OP2 HOP2 sing N N 85 DA "O5'" "C5'" sing N N 86 DA "C5'" "C4'" sing N N 87 DA "C5'" "H5'" sing N N 88 DA "C5'" "H5''" sing N N 89 DA "C4'" "O4'" sing N N 90 DA "C4'" "C3'" sing N N 91 DA "C4'" "H4'" sing N N 92 DA "O4'" "C1'" sing N N 93 DA "C3'" "O3'" sing N N 94 DA "C3'" "C2'" sing N N 95 DA "C3'" "H3'" sing N N 96 DA "O3'" "HO3'" sing N N 97 DA "C2'" "C1'" sing N N 98 DA "C2'" "H2'" sing N N 99 DA "C2'" "H2''" sing N N 100 DA "C1'" N9 sing N N 101 DA "C1'" "H1'" sing N N 102 DA N9 C8 sing Y N 103 DA N9 C4 sing Y N 104 DA C8 N7 doub Y N 105 DA C8 H8 sing N N 106 DA N7 C5 sing Y N 107 DA C5 C6 sing Y N 108 DA C5 C4 doub Y N 109 DA C6 N6 sing N N 110 DA C6 N1 doub Y N 111 DA N6 H61 sing N N 112 DA N6 H62 sing N N 113 DA N1 C2 sing Y N 114 DA C2 N3 doub Y N 115 DA C2 H2 sing N N 116 DA N3 C4 sing Y N 117 DC OP3 P sing N N 118 DC OP3 HOP3 sing N N 119 DC P OP1 doub N N 120 DC P OP2 sing N N 121 DC P "O5'" sing N N 122 DC OP2 HOP2 sing N N 123 DC "O5'" "C5'" sing N N 124 DC "C5'" "C4'" sing N N 125 DC "C5'" "H5'" sing N N 126 DC "C5'" "H5''" sing N N 127 DC "C4'" "O4'" sing N N 128 DC "C4'" "C3'" sing N N 129 DC "C4'" "H4'" sing N N 130 DC "O4'" "C1'" sing N N 131 DC "C3'" "O3'" sing N N 132 DC "C3'" "C2'" sing N N 133 DC "C3'" "H3'" sing N N 134 DC "O3'" "HO3'" sing N N 135 DC "C2'" "C1'" sing N N 136 DC "C2'" "H2'" sing N N 137 DC "C2'" "H2''" sing N N 138 DC "C1'" N1 sing N N 139 DC "C1'" "H1'" sing N N 140 DC N1 C2 sing N N 141 DC N1 C6 sing N N 142 DC C2 O2 doub N N 143 DC C2 N3 sing N N 144 DC N3 C4 doub N N 145 DC C4 N4 sing N N 146 DC C4 C5 sing N N 147 DC N4 H41 sing N N 148 DC N4 H42 sing N N 149 DC C5 C6 doub N N 150 DC C5 H5 sing N N 151 DC C6 H6 sing N N 152 DG OP3 P sing N N 153 DG OP3 HOP3 sing N N 154 DG P OP1 doub N N 155 DG P OP2 sing N N 156 DG P "O5'" sing N N 157 DG OP2 HOP2 sing N N 158 DG "O5'" "C5'" sing N N 159 DG "C5'" "C4'" sing N N 160 DG "C5'" "H5'" sing N N 161 DG "C5'" "H5''" sing N N 162 DG "C4'" "O4'" sing N N 163 DG "C4'" "C3'" sing N N 164 DG "C4'" "H4'" sing N N 165 DG "O4'" "C1'" sing N N 166 DG "C3'" "O3'" sing N N 167 DG "C3'" "C2'" sing N N 168 DG "C3'" "H3'" sing N N 169 DG "O3'" "HO3'" sing N N 170 DG "C2'" "C1'" sing N N 171 DG "C2'" "H2'" sing N N 172 DG "C2'" "H2''" sing N N 173 DG "C1'" N9 sing N N 174 DG "C1'" "H1'" sing N N 175 DG N9 C8 sing Y N 176 DG N9 C4 sing Y N 177 DG C8 N7 doub Y N 178 DG C8 H8 sing N N 179 DG N7 C5 sing Y N 180 DG C5 C6 sing N N 181 DG C5 C4 doub Y N 182 DG C6 O6 doub N N 183 DG C6 N1 sing N N 184 DG N1 C2 sing N N 185 DG N1 H1 sing N N 186 DG C2 N2 sing N N 187 DG C2 N3 doub N N 188 DG N2 H21 sing N N 189 DG N2 H22 sing N N 190 DG N3 C4 sing N N 191 DT OP3 P sing N N 192 DT OP3 HOP3 sing N N 193 DT P OP1 doub N N 194 DT P OP2 sing N N 195 DT P "O5'" sing N N 196 DT OP2 HOP2 sing N N 197 DT "O5'" "C5'" sing N N 198 DT "C5'" "C4'" sing N N 199 DT "C5'" "H5'" sing N N 200 DT "C5'" "H5''" sing N N 201 DT "C4'" "O4'" sing N N 202 DT "C4'" "C3'" sing N N 203 DT "C4'" "H4'" sing N N 204 DT "O4'" "C1'" sing N N 205 DT "C3'" "O3'" sing N N 206 DT "C3'" "C2'" sing N N 207 DT "C3'" "H3'" sing N N 208 DT "O3'" "HO3'" sing N N 209 DT "C2'" "C1'" sing N N 210 DT "C2'" "H2'" sing N N 211 DT "C2'" "H2''" sing N N 212 DT "C1'" N1 sing N N 213 DT "C1'" "H1'" sing N N 214 DT N1 C2 sing N N 215 DT N1 C6 sing N N 216 DT C2 O2 doub N N 217 DT C2 N3 sing N N 218 DT N3 C4 sing N N 219 DT N3 H3 sing N N 220 DT C4 O4 doub N N 221 DT C4 C5 sing N N 222 DT C5 C7 sing N N 223 DT C5 C6 doub N N 224 DT C7 H71 sing N N 225 DT C7 H72 sing N N 226 DT C7 H73 sing N N 227 DT C6 H6 sing N N 228 HOH O H1 sing N N 229 HOH O H2 sing N N 230 # _ndb_struct_conf_na.entry_id 1FMS _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.117 -0.265 0.429 3.674 -15.908 -4.169 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.299 -0.263 0.432 8.507 -13.841 -2.363 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.327 -0.179 0.059 -2.423 -5.492 -0.811 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.422 -0.107 -0.085 12.344 -10.092 -1.951 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.097 -0.094 -0.025 8.090 -14.879 2.520 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.158 -0.129 -0.064 3.328 -13.208 3.883 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.033 -0.131 0.106 -2.435 -13.340 2.463 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.201 -0.073 -0.096 -2.318 -10.330 4.107 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.266 -0.100 -0.354 -8.377 -13.723 0.005 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.044 -0.229 0.095 4.921 -7.334 2.033 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.110 -0.264 0.232 1.789 -14.210 -3.527 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.188 -0.184 -0.077 2.217 -5.743 -5.763 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.042 -0.039 3.168 -0.380 4.613 34.982 -0.726 -0.124 3.137 7.633 0.628 35.277 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.715 0.596 3.583 4.783 -8.009 43.755 1.584 -0.463 3.482 -10.604 -6.333 44.690 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.419 0.594 3.024 2.032 12.383 25.555 -1.531 1.303 2.949 26.083 -4.280 28.424 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.098 0.076 3.348 -0.460 1.477 37.594 -0.079 -0.213 3.347 2.290 0.713 37.625 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.101 -0.391 3.338 1.077 3.929 35.393 -1.218 -0.006 3.279 6.436 -1.764 35.619 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.020 -0.705 3.321 0.018 0.369 32.991 -1.305 0.039 3.313 0.650 -0.032 32.993 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.059 -0.354 3.220 1.494 -0.591 32.686 -0.528 0.359 3.220 -1.050 -2.653 32.725 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.070 0.037 3.362 4.387 0.363 42.049 0.014 0.558 3.339 0.504 -6.093 42.268 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.537 1.044 3.111 -5.522 7.911 27.374 0.373 -2.268 3.120 16.096 11.235 28.994 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.118 0.722 3.421 -5.167 -11.246 41.962 2.093 0.987 3.242 -15.308 7.033 43.670 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.080 0.499 3.401 2.033 3.602 36.334 0.277 0.420 3.424 5.754 -3.247 36.561 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1FMS _atom_sites.fract_transf_matrix[1][1] 0.039113 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024853 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015252 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_