data_1FMS
#
_entry.id 1FMS
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.386
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1FMS pdb_00001fms 10.2210/pdb1fms/pdb
NDB DD0035 ? ?
RCSB RCSB011720 ? ?
WWPDB D_1000011720 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2000-09-11
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-04
5 'Structure model' 1 4 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' pdbx_struct_conn_angle
6 5 'Structure model' struct_conn
7 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
5 5 'Structure model' '_pdbx_struct_conn_angle.value'
6 5 'Structure model' '_struct_conn.pdbx_dist_value'
7 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
8 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
9 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
10 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1FMS
_pdbx_database_status.recvd_initial_deposition_date 2000-08-18
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry N
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name NDB
_pdbx_database_related.db_id DD0034
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Simpson, I.J.' 1
'Lee, M.' 2
'Kumar, A.' 3
'Boykin, D.W.' 4
'Neidle, S.' 5
#
_citation.id primary
_citation.title
'DNA minor groove interactions and the biological activity of 2,5-bis-[4-(N-alkylamidino)phenyl] furans'
_citation.journal_abbrev Bioorg.Med.Chem.Lett.
_citation.journal_volume 10
_citation.page_first 2593
_citation.page_last 2597
_citation.year 2000
_citation.journal_id_ASTM BMCLE8
_citation.country UK
_citation.journal_id_ISSN 0960-894X
_citation.journal_id_CSD 1127
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 11128631
_citation.pdbx_database_id_DOI '10.1016/S0960-894X(00)00511-4'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Simpson, I.J.' 1 ?
primary 'Lee, M.' 2 ?
primary 'Kumar, A.' 3 ?
primary 'Boykin, D.W.' 4 ?
primary 'Neidle, S.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3663.392 2 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
3 non-polymer syn '2,5-BIS{[4-(N-CYCLOHEXYLDIAMINOMETHYL)PHENYL]}FURAN' 472.665 1 ? ? ? ?
4 water nat water 18.015 187 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 '2,5-BIS{[4-(N-CYCLOHEXYLDIAMINOMETHYL)PHENYL]}FURAN' D35
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DA n
1 6 DA n
1 7 DT n
1 8 DT n
1 9 DC n
1 10 DG n
1 11 DC n
1 12 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
D35 non-polymer . '2,5-BIS{[4-(N-CYCLOHEXYLDIAMINOMETHYL)PHENYL]}FURAN' ? 'C30 H40 N4 O' 472.665
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DA 6 6 6 DA A A . n
A 1 7 DT 7 7 7 DT T A . n
A 1 8 DT 8 8 8 DT T A . n
A 1 9 DC 9 9 9 DC C A . n
A 1 10 DG 10 10 10 DG G A . n
A 1 11 DC 11 11 11 DC C A . n
A 1 12 DG 12 12 12 DG G A . n
B 1 1 DC 1 13 13 DC C B . n
B 1 2 DG 2 14 14 DG G B . n
B 1 3 DC 3 15 15 DC C B . n
B 1 4 DG 4 16 16 DG G B . n
B 1 5 DA 5 17 17 DA A B . n
B 1 6 DA 6 18 18 DA A B . n
B 1 7 DT 7 19 19 DT T B . n
B 1 8 DT 8 20 20 DT T B . n
B 1 9 DC 9 21 21 DC C B . n
B 1 10 DG 10 22 22 DG G B . n
B 1 11 DC 11 23 23 DC C B . n
B 1 12 DG 12 24 24 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG 1 26 26 MG MO6 A .
D 3 D35 1 25 25 D35 D35 A .
E 4 HOH 1 27 27 HOH HOH A .
E 4 HOH 2 28 28 HOH HOH A .
E 4 HOH 3 30 30 HOH HOH A .
E 4 HOH 4 32 32 HOH HOH A .
E 4 HOH 5 33 33 HOH HOH A .
E 4 HOH 6 34 34 HOH HOH A .
E 4 HOH 7 35 35 HOH HOH A .
E 4 HOH 8 38 38 HOH HOH A .
E 4 HOH 9 39 39 HOH HOH A .
E 4 HOH 10 40 40 HOH HOH A .
E 4 HOH 11 44 44 HOH HOH A .
E 4 HOH 12 46 46 HOH HOH A .
E 4 HOH 13 48 48 HOH HOH A .
E 4 HOH 14 49 49 HOH HOH A .
E 4 HOH 15 50 50 HOH HOH A .
E 4 HOH 16 51 51 HOH HOH A .
E 4 HOH 17 52 52 HOH HOH A .
E 4 HOH 18 53 53 HOH HOH A .
E 4 HOH 19 55 55 HOH HOH A .
E 4 HOH 20 56 56 HOH HOH A .
E 4 HOH 21 57 57 HOH HOH A .
E 4 HOH 22 59 59 HOH HOH A .
E 4 HOH 23 64 64 HOH HOH A .
E 4 HOH 24 68 68 HOH HOH A .
E 4 HOH 25 74 74 HOH HOH A .
E 4 HOH 26 75 75 HOH HOH A .
E 4 HOH 27 76 76 HOH HOH A .
E 4 HOH 28 78 78 HOH HOH A .
E 4 HOH 29 79 79 HOH HOH A .
E 4 HOH 30 80 80 HOH HOH A .
E 4 HOH 31 81 81 HOH HOH A .
E 4 HOH 32 84 84 HOH HOH A .
E 4 HOH 33 89 89 HOH HOH A .
E 4 HOH 34 90 90 HOH HOH A .
E 4 HOH 35 91 91 HOH HOH A .
E 4 HOH 36 92 92 HOH HOH A .
E 4 HOH 37 93 93 HOH HOH A .
E 4 HOH 38 94 94 HOH HOH A .
E 4 HOH 39 95 95 HOH HOH A .
E 4 HOH 40 98 98 HOH HOH A .
E 4 HOH 41 103 103 HOH HOH A .
E 4 HOH 42 106 106 HOH HOH A .
E 4 HOH 43 108 108 HOH HOH A .
E 4 HOH 44 109 109 HOH HOH A .
E 4 HOH 45 110 110 HOH HOH A .
E 4 HOH 46 111 111 HOH HOH A .
E 4 HOH 47 113 113 HOH HOH A .
E 4 HOH 48 114 114 HOH HOH A .
E 4 HOH 49 117 117 HOH HOH A .
E 4 HOH 50 122 122 HOH HOH A .
E 4 HOH 51 124 124 HOH HOH A .
E 4 HOH 52 125 125 HOH HOH A .
E 4 HOH 53 126 126 HOH HOH A .
E 4 HOH 54 127 127 HOH HOH A .
E 4 HOH 55 129 129 HOH HOH A .
E 4 HOH 56 130 130 HOH HOH A .
E 4 HOH 57 133 133 HOH HOH A .
E 4 HOH 58 136 136 HOH HOH A .
E 4 HOH 59 139 139 HOH HOH A .
E 4 HOH 60 141 141 HOH HOH A .
E 4 HOH 61 143 143 HOH HOH A .
E 4 HOH 62 144 144 HOH HOH A .
E 4 HOH 63 146 146 HOH HOH A .
E 4 HOH 64 150 150 HOH HOH A .
E 4 HOH 65 153 153 HOH HOH A .
E 4 HOH 66 154 154 HOH HOH A .
E 4 HOH 67 157 157 HOH HOH A .
E 4 HOH 68 161 161 HOH HOH A .
E 4 HOH 69 162 162 HOH HOH A .
E 4 HOH 70 165 165 HOH HOH A .
E 4 HOH 71 166 166 HOH HOH A .
E 4 HOH 72 170 170 HOH HOH A .
E 4 HOH 73 173 173 HOH HOH A .
E 4 HOH 74 176 176 HOH HOH A .
E 4 HOH 75 177 177 HOH HOH A .
E 4 HOH 76 179 179 HOH HOH A .
E 4 HOH 77 181 181 HOH HOH A .
E 4 HOH 78 182 182 HOH HOH A .
E 4 HOH 79 183 183 HOH HOH A .
E 4 HOH 80 187 187 HOH HOH A .
E 4 HOH 81 190 190 HOH HOH A .
E 4 HOH 82 191 191 HOH HOH A .
E 4 HOH 83 192 192 HOH HOH A .
E 4 HOH 84 197 197 HOH HOH A .
E 4 HOH 85 200 200 HOH HOH A .
E 4 HOH 86 202 202 HOH HOH A .
E 4 HOH 87 203 203 HOH HOH A .
E 4 HOH 88 206 206 HOH HOH A .
E 4 HOH 89 207 207 HOH HOH A .
E 4 HOH 90 209 209 HOH HOH A .
E 4 HOH 91 212 212 HOH HOH A .
E 4 HOH 92 217 217 HOH HOH A .
E 4 HOH 93 221 26 HOH MO6 A .
E 4 HOH 94 222 26 HOH MO6 A .
E 4 HOH 95 223 26 HOH MO6 A .
E 4 HOH 96 224 26 HOH MO6 A .
E 4 HOH 97 225 26 HOH MO6 A .
E 4 HOH 98 226 26 HOH MO6 A .
F 4 HOH 1 29 29 HOH HOH B .
F 4 HOH 2 31 31 HOH HOH B .
F 4 HOH 3 36 36 HOH HOH B .
F 4 HOH 4 37 37 HOH HOH B .
F 4 HOH 5 41 41 HOH HOH B .
F 4 HOH 6 42 42 HOH HOH B .
F 4 HOH 7 43 43 HOH HOH B .
F 4 HOH 8 45 45 HOH HOH B .
F 4 HOH 9 47 47 HOH HOH B .
F 4 HOH 10 54 54 HOH HOH B .
F 4 HOH 11 58 58 HOH HOH B .
F 4 HOH 12 60 60 HOH HOH B .
F 4 HOH 13 61 61 HOH HOH B .
F 4 HOH 14 62 62 HOH HOH B .
F 4 HOH 15 63 63 HOH HOH B .
F 4 HOH 16 65 65 HOH HOH B .
F 4 HOH 17 66 66 HOH HOH B .
F 4 HOH 18 67 67 HOH HOH B .
F 4 HOH 19 69 69 HOH HOH B .
F 4 HOH 20 70 70 HOH HOH B .
F 4 HOH 21 71 71 HOH HOH B .
F 4 HOH 22 72 72 HOH HOH B .
F 4 HOH 23 73 73 HOH HOH B .
F 4 HOH 24 77 77 HOH HOH B .
F 4 HOH 25 82 82 HOH HOH B .
F 4 HOH 26 83 83 HOH HOH B .
F 4 HOH 27 85 85 HOH HOH B .
F 4 HOH 28 86 86 HOH HOH B .
F 4 HOH 29 87 87 HOH HOH B .
F 4 HOH 30 88 88 HOH HOH B .
F 4 HOH 31 96 96 HOH HOH B .
F 4 HOH 32 97 97 HOH HOH B .
F 4 HOH 33 99 99 HOH HOH B .
F 4 HOH 34 100 100 HOH HOH B .
F 4 HOH 35 101 101 HOH HOH B .
F 4 HOH 36 102 102 HOH HOH B .
F 4 HOH 37 104 104 HOH HOH B .
F 4 HOH 38 105 105 HOH HOH B .
F 4 HOH 39 107 107 HOH HOH B .
F 4 HOH 40 112 112 HOH HOH B .
F 4 HOH 41 115 115 HOH HOH B .
F 4 HOH 42 116 116 HOH HOH B .
F 4 HOH 43 118 118 HOH HOH B .
F 4 HOH 44 119 119 HOH HOH B .
F 4 HOH 45 120 120 HOH HOH B .
F 4 HOH 46 121 121 HOH HOH B .
F 4 HOH 47 123 123 HOH HOH B .
F 4 HOH 48 128 128 HOH HOH B .
F 4 HOH 49 131 131 HOH HOH B .
F 4 HOH 50 132 132 HOH HOH B .
F 4 HOH 51 134 134 HOH HOH B .
F 4 HOH 52 135 135 HOH HOH B .
F 4 HOH 53 137 137 HOH HOH B .
F 4 HOH 54 138 138 HOH HOH B .
F 4 HOH 55 140 140 HOH HOH B .
F 4 HOH 56 142 142 HOH HOH B .
F 4 HOH 57 145 145 HOH HOH B .
F 4 HOH 58 147 147 HOH HOH B .
F 4 HOH 59 148 148 HOH HOH B .
F 4 HOH 60 149 149 HOH HOH B .
F 4 HOH 61 151 151 HOH HOH B .
F 4 HOH 62 152 152 HOH HOH B .
F 4 HOH 63 155 155 HOH HOH B .
F 4 HOH 64 156 156 HOH HOH B .
F 4 HOH 65 158 158 HOH HOH B .
F 4 HOH 66 159 159 HOH HOH B .
F 4 HOH 67 160 160 HOH HOH B .
F 4 HOH 68 163 163 HOH HOH B .
F 4 HOH 69 164 164 HOH HOH B .
F 4 HOH 70 167 167 HOH HOH B .
F 4 HOH 71 168 168 HOH HOH B .
F 4 HOH 72 169 169 HOH HOH B .
F 4 HOH 73 172 172 HOH HOH B .
F 4 HOH 74 174 174 HOH HOH B .
F 4 HOH 75 175 175 HOH HOH B .
F 4 HOH 76 178 178 HOH HOH B .
F 4 HOH 77 180 180 HOH HOH B .
F 4 HOH 78 184 184 HOH HOH B .
F 4 HOH 79 185 185 HOH HOH B .
F 4 HOH 80 186 186 HOH HOH B .
F 4 HOH 81 188 188 HOH HOH B .
F 4 HOH 82 193 193 HOH HOH B .
F 4 HOH 83 196 196 HOH HOH B .
F 4 HOH 84 198 198 HOH HOH B .
F 4 HOH 85 204 204 HOH HOH B .
F 4 HOH 86 210 210 HOH HOH B .
F 4 HOH 87 218 218 HOH HOH B .
F 4 HOH 88 219 219 HOH HOH B .
F 4 HOH 89 220 220 HOH HOH B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SCALEPACK 'data scaling' . ? 1
X-PLOR 'model building' . ? 2
SHELXL-97 refinement . ? 3
X-PLOR phasing . ? 4
#
_cell.entry_id 1FMS
_cell.length_a 25.567
_cell.length_b 40.236
_cell.length_c 65.567
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1FMS
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting orthorhombic
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1FMS
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 44.22
_exptl_crystal.density_Matthews 2.21
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pH 7
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_details
;MgCl2 2ul 100mM, Spermine 1ul 10mM, Oligonucleotide 2ul 2mM, Drug 2ul 3mM,
MPD 3ul 30% v/v, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 291K
;
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.details
1 1 1 MgCl2 ? ? ?
1 2 1 Spermine ? ? ?
1 3 1 MPD ? ? ?
1 4 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IIC'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1FMS
_reflns.observed_criterion_sigma_I 1.0
_reflns.observed_criterion_sigma_F 2.0
_reflns.d_resolution_low 10.
_reflns.d_resolution_high 1.9
_reflns.number_obs 5492
_reflns.number_all 5750
_reflns.percent_possible_obs 95.5
_reflns.pdbx_Rmerge_I_obs 0.035
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 5
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1FMS
_refine.ls_number_reflns_obs 5492
_refine.ls_number_reflns_all 5750
_refine.pdbx_ls_sigma_I 1.0
_refine.pdbx_ls_sigma_F 2.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_d_res_low 10.
_refine.ls_d_res_high 1.9
_refine.ls_percent_reflns_obs 95.5
_refine.ls_R_factor_obs 0.217
_refine.ls_R_factor_all 0.208
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free 0.28
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.0
_refine.ls_number_reflns_R_free 275
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'Parkinson et al.'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details random
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 486
_refine_hist.pdbx_number_atoms_ligand 42
_refine_hist.number_atoms_solvent 181
_refine_hist.number_atoms_total 709
_refine_hist.d_res_high 1.9
_refine_hist.d_res_low 10.
#
_database_PDB_matrix.entry_id 1FMS
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1FMS
_struct.title 'Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1FMS
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DNA-drug minor groove complex, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 4 ?
F N N 4 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1FMS
_struct_ref.pdbx_db_accession 1FMS
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1FMS A 1 ? 12 ? 1FMS 1 ? 12 ? 1 12
2 1 1FMS B 1 ? 12 ? 1FMS 13 ? 24 ? 13 24
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 221 1_555 ? ? ? ? ? ? ? 2.015 ? ?
metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 222 1_555 ? ? ? ? ? ? ? 2.021 ? ?
metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 223 1_555 ? ? ? ? ? ? ? 2.009 ? ?
metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 224 1_555 ? ? ? ? ? ? ? 2.005 ? ?
metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 225 1_555 ? ? ? ? ? ? ? 2.032 ? ?
metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 226 1_555 ? ? ? ? ? ? ? 2.029 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 222 ? 1_555 90.0 ?
2 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 223 ? 1_555 179.2 ?
3 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 223 ? 1_555 89.4 ?
4 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 224 ? 1_555 90.3 ?
5 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 224 ? 1_555 178.5 ?
6 O ? E HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 224 ? 1_555 90.4 ?
7 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 89.8 ?
8 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 87.6 ?
9 O ? E HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 90.6 ?
10 O ? E HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 225 ? 1_555 90.9 ?
11 O ? E HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 89.5 ?
12 O ? E HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 90.2 ?
13 O ? E HOH . ? A HOH 223 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 90.1 ?
14 O ? E HOH . ? A HOH 224 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 91.2 ?
15 O ? E HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 226 ? 1_555 177.7 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26'
AC2 Software A D35 25 ? 13 'BINDING SITE FOR RESIDUE D35 A 25'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 HOH E . ? HOH A 221 . ? 1_555 ?
2 AC1 6 HOH E . ? HOH A 222 . ? 1_555 ?
3 AC1 6 HOH E . ? HOH A 223 . ? 1_555 ?
4 AC1 6 HOH E . ? HOH A 224 . ? 1_555 ?
5 AC1 6 HOH E . ? HOH A 225 . ? 1_555 ?
6 AC1 6 HOH E . ? HOH A 226 . ? 1_555 ?
7 AC2 13 DA A 6 ? DA A 6 . ? 1_555 ?
8 AC2 13 DT A 7 ? DT A 7 . ? 1_555 ?
9 AC2 13 DT A 8 ? DT A 8 . ? 1_555 ?
10 AC2 13 DC A 9 ? DC A 9 . ? 1_555 ?
11 AC2 13 DG A 10 ? DG A 10 . ? 1_555 ?
12 AC2 13 HOH E . ? HOH A 44 . ? 1_555 ?
13 AC2 13 HOH E . ? HOH A 80 . ? 1_555 ?
14 AC2 13 HOH E . ? HOH A 209 . ? 1_555 ?
15 AC2 13 DA B 6 ? DA B 18 . ? 1_555 ?
16 AC2 13 DT B 7 ? DT B 19 . ? 1_555 ?
17 AC2 13 DT B 8 ? DT B 20 . ? 1_555 ?
18 AC2 13 DC B 9 ? DC B 21 . ? 1_555 ?
19 AC2 13 HOH F . ? HOH B 71 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 101.22 108.00 -6.78 0.70 N
2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 102.11 108.00 -5.89 0.70 N
3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 99.58 108.00 -8.42 0.70 N
4 1 C6 A DC 3 ? ? N1 A DC 3 ? ? "C1'" A DC 3 ? ? 128.79 120.80 7.99 1.20 N
5 1 C2 A DC 3 ? ? N1 A DC 3 ? ? "C1'" A DC 3 ? ? 111.05 118.80 -7.75 1.10 N
6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 101.02 108.00 -6.98 0.70 N
7 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 101.00 108.00 -7.00 0.70 N
8 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 96.36 108.00 -11.64 0.70 N
9 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 97.30 108.00 -10.70 0.70 N
10 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 97.94 108.00 -10.06 0.70 N
11 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.56 119.90 3.66 0.60 N
12 1 N1 A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 124.01 114.30 9.71 1.40 N
13 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 98.76 108.00 -9.24 0.70 N
14 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 100.98 108.00 -7.02 0.70 N
15 1 C5 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 125.00 128.60 -3.60 0.60 N
16 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 84.00 109.40 -25.40 0.80 N
17 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 98.87 108.00 -9.13 0.70 N
18 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 102.18 108.00 -5.82 0.70 N
19 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 98.04 108.00 -9.96 0.70 N
20 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 101.84 108.00 -6.16 0.70 N
21 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 100.89 108.00 -7.11 0.70 N
22 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 97.65 108.00 -10.35 0.70 N
23 1 N1 B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 122.93 114.30 8.63 1.40 N
24 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 95.38 108.00 -12.62 0.70 N
25 1 N1 B DC 21 ? ? "C1'" B DC 21 ? ? "C2'" B DC 21 ? ? 123.67 114.30 9.37 1.40 N
26 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 97.68 108.00 -10.32 0.70 N
27 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 124.73 128.60 -3.87 0.60 N
28 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 97.42 108.00 -10.58 0.70 N
29 1 C2 B DC 23 ? ? N1 B DC 23 ? ? "C1'" B DC 23 ? ? 112.18 118.80 -6.62 1.10 N
#
loop_
_pdbx_validate_chiral.id
_pdbx_validate_chiral.PDB_model_num
_pdbx_validate_chiral.auth_atom_id
_pdbx_validate_chiral.label_alt_id
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_comp_id
_pdbx_validate_chiral.auth_seq_id
_pdbx_validate_chiral.PDB_ins_code
_pdbx_validate_chiral.details
_pdbx_validate_chiral.omega
1 1 C7 ? A D35 25 ? PLANAR .
2 1 "C7'" ? A D35 25 ? PLANAR .
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text 'MINOR GROOVE BINDER'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
D35 C7 C N S 1
D35 N2 N N N 2
D35 N1 N N N 3
D35 C8 C N N 4
D35 C9 C N N 5
D35 C10 C N N 6
D35 C11 C N N 7
D35 C12 C N N 8
D35 C13 C N N 9
D35 C1 C Y N 10
D35 C2 C Y N 11
D35 C3 C Y N 12
D35 C4 C Y N 13
D35 C5 C Y N 14
D35 C6 C Y N 15
D35 CA C Y N 16
D35 O1 O Y N 17
D35 CB C Y N 18
D35 "CB'" C Y N 19
D35 "CA'" C Y N 20
D35 "C1'" C Y N 21
D35 "C2'" C Y N 22
D35 "C3'" C Y N 23
D35 "C4'" C Y N 24
D35 "C5'" C Y N 25
D35 "C6'" C Y N 26
D35 "C7'" C N R 27
D35 "N2'" N N N 28
D35 "N1'" N N N 29
D35 "C8'" C N N 30
D35 "C9'" C N N 31
D35 CAX C N N 32
D35 CBX C N N 33
D35 CCX C N N 34
D35 CDX C N N 35
D35 H77 H N N 36
D35 HN2 H N N 37
D35 HN1 H N N 38
D35 HN2A H N N 39
D35 H8 H N N 40
D35 H91 H N N 41
D35 H92 H N N 42
D35 H01 H N N 43
D35 H02 H N N 44
D35 H11 H N N 45
D35 H12 H N N 46
D35 H21 H N N 47
D35 H22 H N N 48
D35 H31 H N N 49
D35 H32 H N N 50
D35 H2 H N N 51
D35 H3 H N N 52
D35 H5 H N N 53
D35 H6 H N N 54
D35 HB H N N 55
D35 "HB'" H N N 56
D35 "H2'" H N N 57
D35 "H3'" H N N 58
D35 "H5'" H N N 59
D35 "H6'" H N N 60
D35 H7B H N N 61
D35 "HN2'" H N N 62
D35 "HN'1" H N N 63
D35 "HN'2" H N N 64
D35 "H8'" H N N 65
D35 "H9'1" H N N 66
D35 "H9'2" H N N 67
D35 "H0'1" H N N 68
D35 "H0'2" H N N 69
D35 "H1'1" H N N 70
D35 "H1'2" H N N 71
D35 "H2'1" H N N 72
D35 "H2'2" H N N 73
D35 "H3'1" H N N 74
D35 "H3'2" H N N 75
DA OP3 O N N 76
DA P P N N 77
DA OP1 O N N 78
DA OP2 O N N 79
DA "O5'" O N N 80
DA "C5'" C N N 81
DA "C4'" C N R 82
DA "O4'" O N N 83
DA "C3'" C N S 84
DA "O3'" O N N 85
DA "C2'" C N N 86
DA "C1'" C N R 87
DA N9 N Y N 88
DA C8 C Y N 89
DA N7 N Y N 90
DA C5 C Y N 91
DA C6 C Y N 92
DA N6 N N N 93
DA N1 N Y N 94
DA C2 C Y N 95
DA N3 N Y N 96
DA C4 C Y N 97
DA HOP3 H N N 98
DA HOP2 H N N 99
DA "H5'" H N N 100
DA "H5''" H N N 101
DA "H4'" H N N 102
DA "H3'" H N N 103
DA "HO3'" H N N 104
DA "H2'" H N N 105
DA "H2''" H N N 106
DA "H1'" H N N 107
DA H8 H N N 108
DA H61 H N N 109
DA H62 H N N 110
DA H2 H N N 111
DC OP3 O N N 112
DC P P N N 113
DC OP1 O N N 114
DC OP2 O N N 115
DC "O5'" O N N 116
DC "C5'" C N N 117
DC "C4'" C N R 118
DC "O4'" O N N 119
DC "C3'" C N S 120
DC "O3'" O N N 121
DC "C2'" C N N 122
DC "C1'" C N R 123
DC N1 N N N 124
DC C2 C N N 125
DC O2 O N N 126
DC N3 N N N 127
DC C4 C N N 128
DC N4 N N N 129
DC C5 C N N 130
DC C6 C N N 131
DC HOP3 H N N 132
DC HOP2 H N N 133
DC "H5'" H N N 134
DC "H5''" H N N 135
DC "H4'" H N N 136
DC "H3'" H N N 137
DC "HO3'" H N N 138
DC "H2'" H N N 139
DC "H2''" H N N 140
DC "H1'" H N N 141
DC H41 H N N 142
DC H42 H N N 143
DC H5 H N N 144
DC H6 H N N 145
DG OP3 O N N 146
DG P P N N 147
DG OP1 O N N 148
DG OP2 O N N 149
DG "O5'" O N N 150
DG "C5'" C N N 151
DG "C4'" C N R 152
DG "O4'" O N N 153
DG "C3'" C N S 154
DG "O3'" O N N 155
DG "C2'" C N N 156
DG "C1'" C N R 157
DG N9 N Y N 158
DG C8 C Y N 159
DG N7 N Y N 160
DG C5 C Y N 161
DG C6 C N N 162
DG O6 O N N 163
DG N1 N N N 164
DG C2 C N N 165
DG N2 N N N 166
DG N3 N N N 167
DG C4 C Y N 168
DG HOP3 H N N 169
DG HOP2 H N N 170
DG "H5'" H N N 171
DG "H5''" H N N 172
DG "H4'" H N N 173
DG "H3'" H N N 174
DG "HO3'" H N N 175
DG "H2'" H N N 176
DG "H2''" H N N 177
DG "H1'" H N N 178
DG H8 H N N 179
DG H1 H N N 180
DG H21 H N N 181
DG H22 H N N 182
DT OP3 O N N 183
DT P P N N 184
DT OP1 O N N 185
DT OP2 O N N 186
DT "O5'" O N N 187
DT "C5'" C N N 188
DT "C4'" C N R 189
DT "O4'" O N N 190
DT "C3'" C N S 191
DT "O3'" O N N 192
DT "C2'" C N N 193
DT "C1'" C N R 194
DT N1 N N N 195
DT C2 C N N 196
DT O2 O N N 197
DT N3 N N N 198
DT C4 C N N 199
DT O4 O N N 200
DT C5 C N N 201
DT C7 C N N 202
DT C6 C N N 203
DT HOP3 H N N 204
DT HOP2 H N N 205
DT "H5'" H N N 206
DT "H5''" H N N 207
DT "H4'" H N N 208
DT "H3'" H N N 209
DT "HO3'" H N N 210
DT "H2'" H N N 211
DT "H2''" H N N 212
DT "H1'" H N N 213
DT H3 H N N 214
DT H71 H N N 215
DT H72 H N N 216
DT H73 H N N 217
DT H6 H N N 218
HOH O O N N 219
HOH H1 H N N 220
HOH H2 H N N 221
MG MG MG N N 222
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D35 C7 N2 sing N N 1
D35 C7 N1 sing N N 2
D35 C7 C4 sing N N 3
D35 C7 H77 sing N N 4
D35 N2 C8 sing N N 5
D35 N2 HN2 sing N N 6
D35 N1 HN1 sing N N 7
D35 N1 HN2A sing N N 8
D35 C8 C9 sing N N 9
D35 C8 C13 sing N N 10
D35 C8 H8 sing N N 11
D35 C9 C10 sing N N 12
D35 C9 H91 sing N N 13
D35 C9 H92 sing N N 14
D35 C10 C11 sing N N 15
D35 C10 H01 sing N N 16
D35 C10 H02 sing N N 17
D35 C11 C12 sing N N 18
D35 C11 H11 sing N N 19
D35 C11 H12 sing N N 20
D35 C12 C13 sing N N 21
D35 C12 H21 sing N N 22
D35 C12 H22 sing N N 23
D35 C13 H31 sing N N 24
D35 C13 H32 sing N N 25
D35 C1 C2 doub Y N 26
D35 C1 C6 sing Y N 27
D35 C1 CA sing Y N 28
D35 C2 C3 sing Y N 29
D35 C2 H2 sing N N 30
D35 C3 C4 doub Y N 31
D35 C3 H3 sing N N 32
D35 C4 C5 sing Y N 33
D35 C5 C6 doub Y N 34
D35 C5 H5 sing N N 35
D35 C6 H6 sing N N 36
D35 CA O1 sing Y N 37
D35 CA CB doub Y N 38
D35 O1 "CA'" sing Y N 39
D35 CB "CB'" sing Y N 40
D35 CB HB sing N N 41
D35 "CB'" "CA'" doub Y N 42
D35 "CB'" "HB'" sing N N 43
D35 "CA'" "C1'" sing Y N 44
D35 "C1'" "C2'" doub Y N 45
D35 "C1'" "C6'" sing Y N 46
D35 "C2'" "C3'" sing Y N 47
D35 "C2'" "H2'" sing N N 48
D35 "C3'" "C4'" doub Y N 49
D35 "C3'" "H3'" sing N N 50
D35 "C4'" "C5'" sing Y N 51
D35 "C4'" "C7'" sing N N 52
D35 "C5'" "C6'" doub Y N 53
D35 "C5'" "H5'" sing N N 54
D35 "C6'" "H6'" sing N N 55
D35 "C7'" "N2'" sing N N 56
D35 "C7'" "N1'" sing N N 57
D35 "C7'" H7B sing N N 58
D35 "N2'" "C8'" sing N N 59
D35 "N2'" "HN2'" sing N N 60
D35 "N1'" "HN'1" sing N N 61
D35 "N1'" "HN'2" sing N N 62
D35 "C8'" "C9'" sing N N 63
D35 "C8'" CDX sing N N 64
D35 "C8'" "H8'" sing N N 65
D35 "C9'" CAX sing N N 66
D35 "C9'" "H9'1" sing N N 67
D35 "C9'" "H9'2" sing N N 68
D35 CAX CBX sing N N 69
D35 CAX "H0'1" sing N N 70
D35 CAX "H0'2" sing N N 71
D35 CBX CCX sing N N 72
D35 CBX "H1'1" sing N N 73
D35 CBX "H1'2" sing N N 74
D35 CCX CDX sing N N 75
D35 CCX "H2'1" sing N N 76
D35 CCX "H2'2" sing N N 77
D35 CDX "H3'1" sing N N 78
D35 CDX "H3'2" sing N N 79
DA OP3 P sing N N 80
DA OP3 HOP3 sing N N 81
DA P OP1 doub N N 82
DA P OP2 sing N N 83
DA P "O5'" sing N N 84
DA OP2 HOP2 sing N N 85
DA "O5'" "C5'" sing N N 86
DA "C5'" "C4'" sing N N 87
DA "C5'" "H5'" sing N N 88
DA "C5'" "H5''" sing N N 89
DA "C4'" "O4'" sing N N 90
DA "C4'" "C3'" sing N N 91
DA "C4'" "H4'" sing N N 92
DA "O4'" "C1'" sing N N 93
DA "C3'" "O3'" sing N N 94
DA "C3'" "C2'" sing N N 95
DA "C3'" "H3'" sing N N 96
DA "O3'" "HO3'" sing N N 97
DA "C2'" "C1'" sing N N 98
DA "C2'" "H2'" sing N N 99
DA "C2'" "H2''" sing N N 100
DA "C1'" N9 sing N N 101
DA "C1'" "H1'" sing N N 102
DA N9 C8 sing Y N 103
DA N9 C4 sing Y N 104
DA C8 N7 doub Y N 105
DA C8 H8 sing N N 106
DA N7 C5 sing Y N 107
DA C5 C6 sing Y N 108
DA C5 C4 doub Y N 109
DA C6 N6 sing N N 110
DA C6 N1 doub Y N 111
DA N6 H61 sing N N 112
DA N6 H62 sing N N 113
DA N1 C2 sing Y N 114
DA C2 N3 doub Y N 115
DA C2 H2 sing N N 116
DA N3 C4 sing Y N 117
DC OP3 P sing N N 118
DC OP3 HOP3 sing N N 119
DC P OP1 doub N N 120
DC P OP2 sing N N 121
DC P "O5'" sing N N 122
DC OP2 HOP2 sing N N 123
DC "O5'" "C5'" sing N N 124
DC "C5'" "C4'" sing N N 125
DC "C5'" "H5'" sing N N 126
DC "C5'" "H5''" sing N N 127
DC "C4'" "O4'" sing N N 128
DC "C4'" "C3'" sing N N 129
DC "C4'" "H4'" sing N N 130
DC "O4'" "C1'" sing N N 131
DC "C3'" "O3'" sing N N 132
DC "C3'" "C2'" sing N N 133
DC "C3'" "H3'" sing N N 134
DC "O3'" "HO3'" sing N N 135
DC "C2'" "C1'" sing N N 136
DC "C2'" "H2'" sing N N 137
DC "C2'" "H2''" sing N N 138
DC "C1'" N1 sing N N 139
DC "C1'" "H1'" sing N N 140
DC N1 C2 sing N N 141
DC N1 C6 sing N N 142
DC C2 O2 doub N N 143
DC C2 N3 sing N N 144
DC N3 C4 doub N N 145
DC C4 N4 sing N N 146
DC C4 C5 sing N N 147
DC N4 H41 sing N N 148
DC N4 H42 sing N N 149
DC C5 C6 doub N N 150
DC C5 H5 sing N N 151
DC C6 H6 sing N N 152
DG OP3 P sing N N 153
DG OP3 HOP3 sing N N 154
DG P OP1 doub N N 155
DG P OP2 sing N N 156
DG P "O5'" sing N N 157
DG OP2 HOP2 sing N N 158
DG "O5'" "C5'" sing N N 159
DG "C5'" "C4'" sing N N 160
DG "C5'" "H5'" sing N N 161
DG "C5'" "H5''" sing N N 162
DG "C4'" "O4'" sing N N 163
DG "C4'" "C3'" sing N N 164
DG "C4'" "H4'" sing N N 165
DG "O4'" "C1'" sing N N 166
DG "C3'" "O3'" sing N N 167
DG "C3'" "C2'" sing N N 168
DG "C3'" "H3'" sing N N 169
DG "O3'" "HO3'" sing N N 170
DG "C2'" "C1'" sing N N 171
DG "C2'" "H2'" sing N N 172
DG "C2'" "H2''" sing N N 173
DG "C1'" N9 sing N N 174
DG "C1'" "H1'" sing N N 175
DG N9 C8 sing Y N 176
DG N9 C4 sing Y N 177
DG C8 N7 doub Y N 178
DG C8 H8 sing N N 179
DG N7 C5 sing Y N 180
DG C5 C6 sing N N 181
DG C5 C4 doub Y N 182
DG C6 O6 doub N N 183
DG C6 N1 sing N N 184
DG N1 C2 sing N N 185
DG N1 H1 sing N N 186
DG C2 N2 sing N N 187
DG C2 N3 doub N N 188
DG N2 H21 sing N N 189
DG N2 H22 sing N N 190
DG N3 C4 sing N N 191
DT OP3 P sing N N 192
DT OP3 HOP3 sing N N 193
DT P OP1 doub N N 194
DT P OP2 sing N N 195
DT P "O5'" sing N N 196
DT OP2 HOP2 sing N N 197
DT "O5'" "C5'" sing N N 198
DT "C5'" "C4'" sing N N 199
DT "C5'" "H5'" sing N N 200
DT "C5'" "H5''" sing N N 201
DT "C4'" "O4'" sing N N 202
DT "C4'" "C3'" sing N N 203
DT "C4'" "H4'" sing N N 204
DT "O4'" "C1'" sing N N 205
DT "C3'" "O3'" sing N N 206
DT "C3'" "C2'" sing N N 207
DT "C3'" "H3'" sing N N 208
DT "O3'" "HO3'" sing N N 209
DT "C2'" "C1'" sing N N 210
DT "C2'" "H2'" sing N N 211
DT "C2'" "H2''" sing N N 212
DT "C1'" N1 sing N N 213
DT "C1'" "H1'" sing N N 214
DT N1 C2 sing N N 215
DT N1 C6 sing N N 216
DT C2 O2 doub N N 217
DT C2 N3 sing N N 218
DT N3 C4 sing N N 219
DT N3 H3 sing N N 220
DT C4 O4 doub N N 221
DT C4 C5 sing N N 222
DT C5 C7 sing N N 223
DT C5 C6 doub N N 224
DT C7 H71 sing N N 225
DT C7 H72 sing N N 226
DT C7 H73 sing N N 227
DT C6 H6 sing N N 228
HOH O H1 sing N N 229
HOH O H2 sing N N 230
#
_ndb_struct_conf_na.entry_id 1FMS
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 12 1_555 0.117 -0.265 0.429 3.674 -15.908 -4.169 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1
1 A DG 2 1_555 B DC 11 1_555 -0.299 -0.263 0.432 8.507 -13.841 -2.363 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1
1 A DC 3 1_555 B DG 10 1_555 0.327 -0.179 0.059 -2.423 -5.492 -0.811 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1
1 A DG 4 1_555 B DC 9 1_555 -0.422 -0.107 -0.085 12.344 -10.092 -1.951 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1
1 A DA 5 1_555 B DT 8 1_555 0.097 -0.094 -0.025 8.090 -14.879 2.520 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1
1 A DA 6 1_555 B DT 7 1_555 0.158 -0.129 -0.064 3.328 -13.208 3.883 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1
1 A DT 7 1_555 B DA 6 1_555 0.033 -0.131 0.106 -2.435 -13.340 2.463 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1
1 A DT 8 1_555 B DA 5 1_555 -0.201 -0.073 -0.096 -2.318 -10.330 4.107 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1
1 A DC 9 1_555 B DG 4 1_555 0.266 -0.100 -0.354 -8.377 -13.723 0.005 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1
1 A DG 10 1_555 B DC 3 1_555 -0.044 -0.229 0.095 4.921 -7.334 2.033 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1
1 A DC 11 1_555 B DG 2 1_555 0.110 -0.264 0.232 1.789 -14.210 -3.527 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1
1 A DG 12 1_555 B DC 1 1_555 -0.188 -0.184 -0.077 2.217 -5.743 -5.763 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.042 -0.039 3.168 -0.380 4.613 34.982 -0.726 -0.124 3.137 7.633
0.628 35.277 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ?
1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.715 0.596 3.583 4.783 -8.009 43.755 1.584 -0.463 3.482 -10.604
-6.333 44.690 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ?
1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.419 0.594 3.024 2.032 12.383 25.555 -1.531 1.303 2.949 26.083
-4.280 28.424 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ?
1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.098 0.076 3.348 -0.460 1.477 37.594 -0.079 -0.213 3.347 2.290
0.713 37.625 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ?
1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.101 -0.391 3.338 1.077 3.929 35.393 -1.218 -0.006 3.279 6.436
-1.764 35.619 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ?
1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.020 -0.705 3.321 0.018 0.369 32.991 -1.305 0.039 3.313 0.650
-0.032 32.993 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ?
1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.059 -0.354 3.220 1.494 -0.591 32.686 -0.528 0.359 3.220 -1.050
-2.653 32.725 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ?
1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.070 0.037 3.362 4.387 0.363 42.049 0.014 0.558 3.339 0.504
-6.093 42.268 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ?
1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.537 1.044 3.111 -5.522 7.911 27.374 0.373 -2.268 3.120 16.096
11.235 28.994 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ?
1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.118 0.722 3.421 -5.167 -11.246 41.962 2.093 0.987 3.242 -15.308
7.033 43.670 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ?
1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.080 0.499 3.401 2.033 3.602 36.334 0.277 0.420 3.424 5.754
-3.247 36.561 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ?
#
_atom_sites.entry_id 1FMS
_atom_sites.fract_transf_matrix[1][1] 0.039113
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024853
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015252
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_