data_1FN1 # _entry.id 1FN1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FN1 pdb_00001fn1 10.2210/pdb1fn1/pdb NDB DD0032 ? ? RCSB RCSB011728 ? ? WWPDB D_1000011728 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-10-30 2 'Structure model' 1 1 2007-10-16 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_special_symmetry 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 5 'Structure model' struct_conn 10 5 'Structure model' struct_conn_type 11 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.conn_type_id' 6 5 'Structure model' '_struct_conn.id' 7 5 'Structure model' '_struct_conn.pdbx_dist_value' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 10 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 5 'Structure model' '_struct_conn_type.id' 24 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FN1 _pdbx_database_status.recvd_initial_deposition_date 2000-08-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB DD0033 '9-amino-(N-(2-dimethylamino)butyl)acridine-4-carboxamide bound to d(CGTACG)2' unspecified NDB DD0023 '5-F-9-amino-(N-(2-dimethylamino)ethyl-acridine-4-carboxamide bound to d(CGTACG)2' unspecified NDB DD0015 '9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamide bound to d(CGTACG)2' unspecified NDB DDB074 '6-Br-9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamide bound to d(CG(Br)ACG)2' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Adams, A.' 1 'Guss, J.M.' 2 'Collyer, C.A.' 3 'Denny, W.A.' 4 'Wakelin, L.P.G.' 5 # _citation.id primary _citation.title 'A novel form of intercalation involving four DNA duplexes in an acridine-4-carboxamide complex of d(CGTACG)(2).' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 28 _citation.page_first 4244 _citation.page_last 4253 _citation.year 2000 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11058124 _citation.pdbx_database_id_DOI 10.1093/nar/28.21.4244 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Adams, A.' 1 ? primary 'Guss, J.M.' 2 ? primary 'Collyer, C.A.' 3 ? primary 'Denny, W.A.' 4 ? primary 'Wakelin, L.P.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*GP*(BRO)UP*AP*CP*G)-3') ; 1584.906 1 ? ? ? 'KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION' 2 polymer syn ;DNA (5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3') ; 1874.087 1 ? ? ? 'KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION' 3 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 4 non-polymer syn '9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE' 336.431 1 ? ? ? ? 5 water nat water 18.015 19 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(BRU)(DA)(DC)(DG)' GUACG A ? 2 polydeoxyribonucleotide no yes '(DC)(DG)(BRU)(DA)(DC)(DG)' CGUACG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT (II) ION' CO 4 '9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE' 8AD 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 BRU n 1 3 DA n 1 4 DC n 1 5 DG n 2 1 DC n 2 2 DG n 2 3 BRU n 2 4 DA n 2 5 DC n 2 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8AD non-polymer . '9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE' ? 'C20 H24 N4 O' 336.431 BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1002 1002 DG G A . n A 1 2 BRU 2 1003 1003 BRU U A . n A 1 3 DA 3 1004 1004 DA A A . n A 1 4 DC 4 1005 1005 DC C A . n A 1 5 DG 5 1006 1006 DG G A . n B 2 1 DC 1 2001 2001 DC C B . n B 2 2 DG 2 2002 2002 DG G B . n B 2 3 BRU 3 2003 2003 BRU U B . n B 2 4 DA 4 2004 2004 DA A B . n B 2 5 DC 5 2005 2005 DC C B . n B 2 6 DG 6 2006 2006 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CO 1 4002 4002 CO CO A . D 4 8AD 1 3014 3014 8AD 8AD A . E 3 CO 1 4001 4001 CO CO B . F 5 HOH 1 4006 4006 HOH HOH A . F 5 HOH 2 4010 4010 HOH HOH A . F 5 HOH 3 4016 4016 HOH HOH A . F 5 HOH 4 4017 4017 HOH HOH A . F 5 HOH 5 4018 4018 HOH HOH A . G 5 HOH 1 4003 4003 HOH HOH B . G 5 HOH 2 4004 4004 HOH HOH B . G 5 HOH 3 4005 4005 HOH HOH B . G 5 HOH 4 4007 4007 HOH HOH B . G 5 HOH 5 4008 4008 HOH HOH B . G 5 HOH 6 4009 4009 HOH HOH B . G 5 HOH 7 4011 4011 HOH HOH B . G 5 HOH 8 4012 4012 HOH HOH B . G 5 HOH 9 4013 4013 HOH HOH B . G 5 HOH 10 4014 4014 HOH HOH B . G 5 HOH 11 4015 4015 HOH HOH B . G 5 HOH 12 4019 4019 HOH HOH B . G 5 HOH 13 4020 4020 HOH HOH B . G 5 HOH 14 4021 4021 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 B DC 2001 ? "O5'" ? B DC 1 "O5'" 2 1 N 1 A 8AD 3014 ? CD1 ? D 8AD 1 CD1 3 1 N 1 A 8AD 3014 ? OD1 ? D 8AD 1 OD1 4 1 N 1 A 8AD 3014 ? ND1 ? D 8AD 1 ND1 5 1 N 1 A 8AD 3014 ? ND2 ? D 8AD 1 ND2 6 1 N 1 A 8AD 3014 ? CD2 ? D 8AD 1 CD2 7 1 N 1 A 8AD 3014 ? CD3 ? D 8AD 1 CD3 8 1 N 1 A 8AD 3014 ? CD4 ? D 8AD 1 CD4 9 1 N 1 A 8AD 3014 ? CD5 ? D 8AD 1 CD5 10 1 N 1 A 8AD 3014 ? CD7 ? D 8AD 1 CD7 11 1 N 1 A 8AD 3014 ? CD8 ? D 8AD 1 CD8 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 1FN1 _cell.length_a 28.880 _cell.length_b 53.168 _cell.length_c 40.416 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FN1 _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 21 # _exptl.entry_id 1FN1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.0 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'MPD, sodium cacodylate, magnesium acetate, cobalt(II) chloride, spermine, pH 6.5, VAPOR DIFFUSION, temperature 285K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 'magnesium acetate' ? ? ? 1 3 1 CoCl2 ? ? ? 1 4 1 spermine ? ? ? 1 5 1 MPD ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 1' _diffrn_detector.pdbx_collection_date 1999-04-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_wavelength 0.8920 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FN1 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.60 _reflns.number_obs 4345 _reflns.number_all 4345 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.029 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37.0 _reflns.B_iso_Wilson_estimate 20.3 _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.0 _reflns_shell.Rmerge_I_obs 0.075 _reflns_shell.meanI_over_sigI_obs 9.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.number_unique_all 739 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1FN1 _refine.ls_number_reflns_obs 7785 _refine.ls_number_reflns_all 7785 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 40.0 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.23 _refine.ls_R_factor_all 0.23 _refine.ls_R_factor_R_work 0.23 _refine.ls_R_factor_R_free 0.24 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.8 _refine.ls_number_reflns_R_free 608 _refine.ls_number_parameters 1123 _refine.ls_number_restraints 2727 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Shelx 2000' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1FN1 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen 0 _refine_analyze.occupancy_sum_non_hydrogen 251.75 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 222 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 275 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 40.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_angle_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0145 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.075 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1FN1 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.218 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff 0.238 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 7.9 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 568 _pdbx_refine.number_reflns_obs_4sig_cutoff 7161 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1FN1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 1FN1 _struct.title 'CRYSTAL STRUCTURE OF 9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CG(5BR)UACG)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FN1 _struct_keywords.pdbx_keywords DNA _struct_keywords.text '9-aminoacridine-4-carboamide, hexanucleotide, intercalation, quadruplex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1FN1 1FN1 ? ? ? 2 2 PDB 1FN1 1FN1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FN1 A 1 ? 5 ? 1FN1 1002 ? 1006 ? 1002 1006 2 2 1FN1 B 1 ? 6 ? 1FN1 2001 ? 2006 ? 2001 2006 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A BRU 2 P ? ? A DG 1002 A BRU 1003 1_555 ? ? ? ? ? ? ? 1.688 ? ? covale2 covale both ? A BRU 2 "O3'" ? ? ? 1_555 A DA 3 P ? ? A BRU 1003 A DA 1004 1_555 ? ? ? ? ? ? ? 1.643 ? ? covale3 covale both ? B DG 2 "O3'" ? ? ? 1_555 B BRU 3 P ? ? B DG 2002 B BRU 2003 1_555 ? ? ? ? ? ? ? 1.663 ? ? covale4 covale both ? B BRU 3 "O3'" ? ? ? 1_555 B DA 4 P ? ? B BRU 2003 B DA 2004 1_555 ? ? ? ? ? ? ? 1.690 ? ? metalc1 metalc ? ? A DG 1 N7 ? ? ? 1_555 C CO . CO ? ? A DG 1002 A CO 4002 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc2 metalc ? ? B DG 6 N7 ? ? ? 1_555 E CO . CO ? ? B DG 2006 B CO 4001 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc3 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? B CO 4001 B HOH 4007 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc4 metalc ? ? E CO . CO ? ? ? 1_555 G HOH . O ? ? B CO 4001 B HOH 4009 1_555 ? ? ? ? ? ? ? 1.809 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 1002 B DC 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 1002 B DC 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 1002 B DC 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A BRU 2 N3 ? ? ? 1_555 B DA 4 N1 ? ? A BRU 1003 B DA 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A BRU 2 O4 ? ? ? 1_555 B DA 4 N6 ? ? A BRU 1003 B DA 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B BRU 3 N3 ? ? A DA 1004 B BRU 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B BRU 3 O4 ? ? A DA 1004 B BRU 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 1005 B DG 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 1005 B DG 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 1005 B DG 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? B DG 6 ? B DG 2006 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? G HOH . ? B HOH 4007 ? 1_555 85.9 ? 2 N7 ? B DG 6 ? B DG 2006 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? G HOH . ? B HOH 4009 ? 1_555 93.3 ? 3 O ? G HOH . ? B HOH 4007 ? 1_555 CO ? E CO . ? B CO 4001 ? 1_555 O ? G HOH . ? B HOH 4009 ? 1_555 75.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CO 4001 ? 6 'BINDING SITE FOR RESIDUE CO B 4001' AC2 Software A CO 4002 ? 1 'BINDING SITE FOR RESIDUE CO A 4002' AC3 Software A 8AD 3014 ? 5 'BINDING SITE FOR RESIDUE 8AD A 3014' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG B 6 ? DG B 2006 . ? 1_555 ? 2 AC1 6 DG B 6 ? DG B 2006 . ? 3_756 ? 3 AC1 6 HOH G . ? HOH B 4007 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH B 4007 . ? 3_756 ? 5 AC1 6 HOH G . ? HOH B 4009 . ? 3_756 ? 6 AC1 6 HOH G . ? HOH B 4009 . ? 1_555 ? 7 AC2 1 DG A 1 ? DG A 1002 . ? 1_555 ? 8 AC3 5 DC A 4 ? DC A 1005 . ? 1_555 ? 9 AC3 5 DG A 5 ? DG A 1006 . ? 1_555 ? 10 AC3 5 DC B 1 ? DC B 2001 . ? 3_655 ? 11 AC3 5 DG B 2 ? DG B 2002 . ? 2_665 ? 12 AC3 5 DG B 2 ? DG B 2002 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 1.575 1.512 0.063 0.007 N 2 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.491 1.420 0.071 0.011 N 3 1 "O3'" A DG 1002 ? ? "C3'" A DG 1002 ? ? 1.335 1.419 -0.084 0.006 N 4 1 "O3'" A DG 1002 ? ? P A BRU 1003 ? ? 1.688 1.607 0.081 0.012 Y 5 1 "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 1.572 1.512 0.060 0.007 N 6 1 "O3'" A DA 1004 ? ? "C3'" A DA 1004 ? ? 1.320 1.419 -0.099 0.006 N 7 1 "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? 1.585 1.512 0.073 0.007 N 8 1 "O3'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 1.310 1.419 -0.109 0.006 N 9 1 "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 1.579 1.512 0.067 0.007 N 10 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 1.487 1.420 0.067 0.011 N 11 1 "O3'" A DG 1006 ? ? "C3'" A DG 1006 ? ? 1.330 1.419 -0.089 0.006 N 12 1 "C5'" B DC 2001 ? ? "C4'" B DC 2001 ? ? 1.582 1.512 0.070 0.007 N 13 1 "O4'" B DC 2001 ? ? "C1'" B DC 2001 ? ? 1.496 1.420 0.076 0.011 N 14 1 "O3'" B DC 2001 ? ? "C3'" B DC 2001 ? ? 1.321 1.419 -0.098 0.006 N 15 1 "C5'" B DG 2002 ? ? "C4'" B DG 2002 ? ? 1.575 1.512 0.063 0.007 N 16 1 "O4'" B DG 2002 ? ? "C1'" B DG 2002 ? ? 1.498 1.420 0.078 0.011 N 17 1 "O3'" B DG 2002 ? ? "C3'" B DG 2002 ? ? 1.296 1.419 -0.123 0.006 N 18 1 "O3'" B BRU 2003 ? ? P B DA 2004 ? ? 1.690 1.607 0.083 0.012 Y 19 1 "C5'" B DA 2004 ? ? "C4'" B DA 2004 ? ? 1.579 1.512 0.067 0.007 N 20 1 "O3'" B DA 2004 ? ? "C3'" B DA 2004 ? ? 1.341 1.419 -0.078 0.006 N 21 1 P B DC 2005 ? ? OP2 B DC 2005 ? ? 1.377 1.485 -0.108 0.017 N 22 1 "C5'" B DC 2005 ? ? "C4'" B DC 2005 ? ? 1.578 1.512 0.066 0.007 N 23 1 "O3'" B DC 2005 ? ? "C3'" B DC 2005 ? ? 1.354 1.419 -0.065 0.006 N 24 1 "C5'" B DG 2006 ? ? "C4'" B DG 2006 ? ? 1.586 1.512 0.074 0.007 N 25 1 "O4'" B DG 2006 ? ? "C1'" B DG 2006 ? ? 1.500 1.420 0.080 0.011 N 26 1 "O3'" B DG 2006 ? ? "C3'" B DG 2006 ? ? 1.355 1.419 -0.064 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 101.67 109.40 -7.73 0.80 N 2 1 N9 A DG 1002 ? ? "C1'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 125.55 114.30 11.25 1.40 N 3 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? N9 A DG 1002 ? ? 98.88 108.00 -9.12 0.70 N 4 1 "C3'" A BRU 1003 ? ? "O3'" A BRU 1003 ? ? P A DA 1004 ? ? 128.31 119.70 8.61 1.20 Y 5 1 OP1 A DA 1004 ? ? P A DA 1004 ? ? OP2 A DA 1004 ? ? 128.88 119.60 9.28 1.50 N 6 1 "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 102.65 109.40 -6.75 0.80 N 7 1 P A DA 1004 ? ? "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? 108.92 120.90 -11.98 1.60 N 8 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? N9 A DA 1004 ? ? 102.94 108.00 -5.06 0.70 N 9 1 OP1 A DC 1005 ? ? P A DC 1005 ? ? OP2 A DC 1005 ? ? 130.15 119.60 10.55 1.50 N 10 1 "O5'" A DC 1005 ? ? "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? 97.25 109.40 -12.15 0.80 N 11 1 "C1'" A DC 1005 ? ? "O4'" A DC 1005 ? ? "C4'" A DC 1005 ? ? 103.36 110.10 -6.74 1.00 N 12 1 "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 103.31 109.40 -6.09 0.80 N 13 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? N9 A DG 1006 ? ? 101.96 108.00 -6.04 0.70 N 14 1 C8 A DG 1006 ? ? N9 A DG 1006 ? ? C4 A DG 1006 ? ? 103.66 106.40 -2.74 0.40 N 15 1 N3 A DG 1006 ? ? C4 A DG 1006 ? ? N9 A DG 1006 ? ? 121.95 126.00 -4.05 0.60 N 16 1 N3 A DG 1006 ? ? C2 A DG 1006 ? ? N2 A DG 1006 ? ? 115.29 119.90 -4.61 0.70 N 17 1 "O5'" B DC 2001 ? ? "C5'" B DC 2001 ? ? "C4'" B DC 2001 ? ? 101.95 109.40 -7.45 0.80 N 18 1 C6 B DC 2001 ? ? N1 B DC 2001 ? ? C2 B DC 2001 ? ? 117.68 120.30 -2.62 0.40 N 19 1 N1 B DC 2001 ? ? C2 B DC 2001 ? ? O2 B DC 2001 ? ? 114.80 118.90 -4.10 0.60 N 20 1 "C3'" B DC 2001 ? ? "O3'" B DC 2001 ? ? P B DG 2002 ? ? 106.75 119.70 -12.95 1.20 Y 21 1 P B DG 2002 ? ? "O5'" B DG 2002 ? ? "C5'" B DG 2002 ? ? 100.41 120.90 -20.49 1.60 N 22 1 N9 B DG 2002 ? ? "C1'" B DG 2002 ? ? "C2'" B DG 2002 ? ? 122.72 114.30 8.42 1.40 N 23 1 "O4'" B DG 2002 ? ? "C1'" B DG 2002 ? ? N9 B DG 2002 ? ? 101.88 108.00 -6.12 0.70 N 24 1 N3 B DG 2002 ? ? C4 B DG 2002 ? ? N9 B DG 2002 ? ? 122.16 126.00 -3.84 0.60 N 25 1 OP1 B DA 2004 ? ? P B DA 2004 ? ? OP2 B DA 2004 ? ? 131.66 119.60 12.06 1.50 N 26 1 "O5'" B DA 2004 ? ? "C5'" B DA 2004 ? ? "C4'" B DA 2004 ? ? 102.77 109.40 -6.63 0.80 N 27 1 "O5'" B DC 2005 ? ? "C5'" B DC 2005 ? ? "C4'" B DC 2005 ? ? 103.07 109.40 -6.33 0.80 N 28 1 "O5'" B DG 2006 ? ? "C5'" B DG 2006 ? ? "C4'" B DG 2006 ? ? 102.74 109.40 -6.66 0.80 N 29 1 N9 B DG 2006 ? ? "C1'" B DG 2006 ? ? "C2'" B DG 2006 ? ? 124.15 114.30 9.85 1.40 N 30 1 "O4'" B DG 2006 ? ? "C1'" B DG 2006 ? ? N9 B DG 2006 ? ? 101.55 108.00 -6.45 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 2 A BRU 1003 ? DU ? 2 B BRU 3 B BRU 2003 ? DU ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A 8AD 3014 ? D 8AD . 2 1 B CO 4001 ? E CO . 3 1 A HOH 4016 ? F HOH . 4 1 A HOH 4018 ? F HOH . 5 1 B HOH 4003 ? G HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8AD C1 C Y N 1 8AD C2 C Y N 2 8AD C3 C Y N 3 8AD C4 C Y N 4 8AD C5 C Y N 5 8AD C6 C Y N 6 8AD C7 C Y N 7 8AD C8 C Y N 8 8AD C9 C Y N 9 8AD N10 N Y N 10 8AD C11 C Y N 11 8AD C12 C Y N 12 8AD C13 C Y N 13 8AD C14 C Y N 14 8AD N9 N N N 15 8AD CD1 C N N 16 8AD OD1 O N N 17 8AD ND1 N N N 18 8AD ND2 N N N 19 8AD CD2 C N N 20 8AD CD3 C N N 21 8AD CD4 C N N 22 8AD CD5 C N N 23 8AD CD7 C N N 24 8AD CD8 C N N 25 8AD H1 H N N 26 8AD H2 H N N 27 8AD H3 H N N 28 8AD H5 H N N 29 8AD H6 H N N 30 8AD H7 H N N 31 8AD H8 H N N 32 8AD H9A H N N 33 8AD H9B H N N 34 8AD HD1 H N N 35 8AD HD21 H N N 36 8AD HD22 H N N 37 8AD HD31 H N N 38 8AD HD32 H N N 39 8AD HD41 H N N 40 8AD HD42 H N N 41 8AD HD51 H N N 42 8AD HD52 H N N 43 8AD HD71 H N N 44 8AD HD72 H N N 45 8AD HD73 H N N 46 8AD HD81 H N N 47 8AD HD82 H N N 48 8AD HD83 H N N 49 BRU N1 N N N 50 BRU C2 C N N 51 BRU N3 N N N 52 BRU C4 C N N 53 BRU C5 C N N 54 BRU C6 C N N 55 BRU O2 O N N 56 BRU O4 O N N 57 BRU BR BR N N 58 BRU "C1'" C N R 59 BRU "C2'" C N N 60 BRU "C3'" C N S 61 BRU "C4'" C N R 62 BRU "O3'" O N N 63 BRU "O4'" O N N 64 BRU "C5'" C N N 65 BRU "O5'" O N N 66 BRU P P N N 67 BRU OP1 O N N 68 BRU OP2 O N N 69 BRU OP3 O N N 70 BRU HN3 H N N 71 BRU H6 H N N 72 BRU "H1'" H N N 73 BRU "H2'" H N N 74 BRU "H2''" H N N 75 BRU "H3'" H N N 76 BRU "H4'" H N N 77 BRU "HO3'" H N N 78 BRU "H5'" H N N 79 BRU "H5''" H N N 80 BRU HOP2 H N N 81 BRU HOP3 H N N 82 CO CO CO N N 83 DA OP3 O N N 84 DA P P N N 85 DA OP1 O N N 86 DA OP2 O N N 87 DA "O5'" O N N 88 DA "C5'" C N N 89 DA "C4'" C N R 90 DA "O4'" O N N 91 DA "C3'" C N S 92 DA "O3'" O N N 93 DA "C2'" C N N 94 DA "C1'" C N R 95 DA N9 N Y N 96 DA C8 C Y N 97 DA N7 N Y N 98 DA C5 C Y N 99 DA C6 C Y N 100 DA N6 N N N 101 DA N1 N Y N 102 DA C2 C Y N 103 DA N3 N Y N 104 DA C4 C Y N 105 DA HOP3 H N N 106 DA HOP2 H N N 107 DA "H5'" H N N 108 DA "H5''" H N N 109 DA "H4'" H N N 110 DA "H3'" H N N 111 DA "HO3'" H N N 112 DA "H2'" H N N 113 DA "H2''" H N N 114 DA "H1'" H N N 115 DA H8 H N N 116 DA H61 H N N 117 DA H62 H N N 118 DA H2 H N N 119 DC OP3 O N N 120 DC P P N N 121 DC OP1 O N N 122 DC OP2 O N N 123 DC "O5'" O N N 124 DC "C5'" C N N 125 DC "C4'" C N R 126 DC "O4'" O N N 127 DC "C3'" C N S 128 DC "O3'" O N N 129 DC "C2'" C N N 130 DC "C1'" C N R 131 DC N1 N N N 132 DC C2 C N N 133 DC O2 O N N 134 DC N3 N N N 135 DC C4 C N N 136 DC N4 N N N 137 DC C5 C N N 138 DC C6 C N N 139 DC HOP3 H N N 140 DC HOP2 H N N 141 DC "H5'" H N N 142 DC "H5''" H N N 143 DC "H4'" H N N 144 DC "H3'" H N N 145 DC "HO3'" H N N 146 DC "H2'" H N N 147 DC "H2''" H N N 148 DC "H1'" H N N 149 DC H41 H N N 150 DC H42 H N N 151 DC H5 H N N 152 DC H6 H N N 153 DG OP3 O N N 154 DG P P N N 155 DG OP1 O N N 156 DG OP2 O N N 157 DG "O5'" O N N 158 DG "C5'" C N N 159 DG "C4'" C N R 160 DG "O4'" O N N 161 DG "C3'" C N S 162 DG "O3'" O N N 163 DG "C2'" C N N 164 DG "C1'" C N R 165 DG N9 N Y N 166 DG C8 C Y N 167 DG N7 N Y N 168 DG C5 C Y N 169 DG C6 C N N 170 DG O6 O N N 171 DG N1 N N N 172 DG C2 C N N 173 DG N2 N N N 174 DG N3 N N N 175 DG C4 C Y N 176 DG HOP3 H N N 177 DG HOP2 H N N 178 DG "H5'" H N N 179 DG "H5''" H N N 180 DG "H4'" H N N 181 DG "H3'" H N N 182 DG "HO3'" H N N 183 DG "H2'" H N N 184 DG "H2''" H N N 185 DG "H1'" H N N 186 DG H8 H N N 187 DG H1 H N N 188 DG H21 H N N 189 DG H22 H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8AD C1 C2 doub Y N 1 8AD C1 C11 sing Y N 2 8AD C1 H1 sing N N 3 8AD C2 C3 sing Y N 4 8AD C2 H2 sing N N 5 8AD C3 C4 doub Y N 6 8AD C3 H3 sing N N 7 8AD C4 C12 sing Y N 8 8AD C4 CD1 sing N N 9 8AD C5 C6 doub Y N 10 8AD C5 C14 sing Y N 11 8AD C5 H5 sing N N 12 8AD C6 C7 sing Y N 13 8AD C6 H6 sing N N 14 8AD C7 C8 doub Y N 15 8AD C7 H7 sing N N 16 8AD C8 C13 sing Y N 17 8AD C8 H8 sing N N 18 8AD C9 C11 doub Y N 19 8AD C9 C13 sing Y N 20 8AD C9 N9 sing N N 21 8AD N10 C12 doub Y N 22 8AD N10 C14 sing Y N 23 8AD C11 C12 sing Y N 24 8AD C13 C14 doub Y N 25 8AD N9 H9A sing N N 26 8AD N9 H9B sing N N 27 8AD CD1 OD1 doub N N 28 8AD CD1 ND1 sing N N 29 8AD ND1 CD2 sing N N 30 8AD ND1 HD1 sing N N 31 8AD ND2 CD5 sing N N 32 8AD ND2 CD7 sing N N 33 8AD ND2 CD8 sing N N 34 8AD CD2 CD3 sing N N 35 8AD CD2 HD21 sing N N 36 8AD CD2 HD22 sing N N 37 8AD CD3 CD4 sing N N 38 8AD CD3 HD31 sing N N 39 8AD CD3 HD32 sing N N 40 8AD CD4 CD5 sing N N 41 8AD CD4 HD41 sing N N 42 8AD CD4 HD42 sing N N 43 8AD CD5 HD51 sing N N 44 8AD CD5 HD52 sing N N 45 8AD CD7 HD71 sing N N 46 8AD CD7 HD72 sing N N 47 8AD CD7 HD73 sing N N 48 8AD CD8 HD81 sing N N 49 8AD CD8 HD82 sing N N 50 8AD CD8 HD83 sing N N 51 BRU N1 C2 sing N N 52 BRU N1 C6 sing N N 53 BRU N1 "C1'" sing N N 54 BRU C2 N3 sing N N 55 BRU C2 O2 doub N N 56 BRU N3 C4 sing N N 57 BRU N3 HN3 sing N N 58 BRU C4 C5 sing N N 59 BRU C4 O4 doub N N 60 BRU C5 C6 doub N N 61 BRU C5 BR sing N N 62 BRU C6 H6 sing N N 63 BRU "C1'" "C2'" sing N N 64 BRU "C1'" "O4'" sing N N 65 BRU "C1'" "H1'" sing N N 66 BRU "C2'" "C3'" sing N N 67 BRU "C2'" "H2'" sing N N 68 BRU "C2'" "H2''" sing N N 69 BRU "C3'" "C4'" sing N N 70 BRU "C3'" "O3'" sing N N 71 BRU "C3'" "H3'" sing N N 72 BRU "C4'" "O4'" sing N N 73 BRU "C4'" "C5'" sing N N 74 BRU "C4'" "H4'" sing N N 75 BRU "O3'" "HO3'" sing N N 76 BRU "C5'" "O5'" sing N N 77 BRU "C5'" "H5'" sing N N 78 BRU "C5'" "H5''" sing N N 79 BRU "O5'" P sing N N 80 BRU P OP1 doub N N 81 BRU P OP2 sing N N 82 BRU P OP3 sing N N 83 BRU OP2 HOP2 sing N N 84 BRU OP3 HOP3 sing N N 85 DA OP3 P sing N N 86 DA OP3 HOP3 sing N N 87 DA P OP1 doub N N 88 DA P OP2 sing N N 89 DA P "O5'" sing N N 90 DA OP2 HOP2 sing N N 91 DA "O5'" "C5'" sing N N 92 DA "C5'" "C4'" sing N N 93 DA "C5'" "H5'" sing N N 94 DA "C5'" "H5''" sing N N 95 DA "C4'" "O4'" sing N N 96 DA "C4'" "C3'" sing N N 97 DA "C4'" "H4'" sing N N 98 DA "O4'" "C1'" sing N N 99 DA "C3'" "O3'" sing N N 100 DA "C3'" "C2'" sing N N 101 DA "C3'" "H3'" sing N N 102 DA "O3'" "HO3'" sing N N 103 DA "C2'" "C1'" sing N N 104 DA "C2'" "H2'" sing N N 105 DA "C2'" "H2''" sing N N 106 DA "C1'" N9 sing N N 107 DA "C1'" "H1'" sing N N 108 DA N9 C8 sing Y N 109 DA N9 C4 sing Y N 110 DA C8 N7 doub Y N 111 DA C8 H8 sing N N 112 DA N7 C5 sing Y N 113 DA C5 C6 sing Y N 114 DA C5 C4 doub Y N 115 DA C6 N6 sing N N 116 DA C6 N1 doub Y N 117 DA N6 H61 sing N N 118 DA N6 H62 sing N N 119 DA N1 C2 sing Y N 120 DA C2 N3 doub Y N 121 DA C2 H2 sing N N 122 DA N3 C4 sing Y N 123 DC OP3 P sing N N 124 DC OP3 HOP3 sing N N 125 DC P OP1 doub N N 126 DC P OP2 sing N N 127 DC P "O5'" sing N N 128 DC OP2 HOP2 sing N N 129 DC "O5'" "C5'" sing N N 130 DC "C5'" "C4'" sing N N 131 DC "C5'" "H5'" sing N N 132 DC "C5'" "H5''" sing N N 133 DC "C4'" "O4'" sing N N 134 DC "C4'" "C3'" sing N N 135 DC "C4'" "H4'" sing N N 136 DC "O4'" "C1'" sing N N 137 DC "C3'" "O3'" sing N N 138 DC "C3'" "C2'" sing N N 139 DC "C3'" "H3'" sing N N 140 DC "O3'" "HO3'" sing N N 141 DC "C2'" "C1'" sing N N 142 DC "C2'" "H2'" sing N N 143 DC "C2'" "H2''" sing N N 144 DC "C1'" N1 sing N N 145 DC "C1'" "H1'" sing N N 146 DC N1 C2 sing N N 147 DC N1 C6 sing N N 148 DC C2 O2 doub N N 149 DC C2 N3 sing N N 150 DC N3 C4 doub N N 151 DC C4 N4 sing N N 152 DC C4 C5 sing N N 153 DC N4 H41 sing N N 154 DC N4 H42 sing N N 155 DC C5 C6 doub N N 156 DC C5 H5 sing N N 157 DC C6 H6 sing N N 158 DG OP3 P sing N N 159 DG OP3 HOP3 sing N N 160 DG P OP1 doub N N 161 DG P OP2 sing N N 162 DG P "O5'" sing N N 163 DG OP2 HOP2 sing N N 164 DG "O5'" "C5'" sing N N 165 DG "C5'" "C4'" sing N N 166 DG "C5'" "H5'" sing N N 167 DG "C5'" "H5''" sing N N 168 DG "C4'" "O4'" sing N N 169 DG "C4'" "C3'" sing N N 170 DG "C4'" "H4'" sing N N 171 DG "O4'" "C1'" sing N N 172 DG "C3'" "O3'" sing N N 173 DG "C3'" "C2'" sing N N 174 DG "C3'" "H3'" sing N N 175 DG "O3'" "HO3'" sing N N 176 DG "C2'" "C1'" sing N N 177 DG "C2'" "H2'" sing N N 178 DG "C2'" "H2''" sing N N 179 DG "C1'" N9 sing N N 180 DG "C1'" "H1'" sing N N 181 DG N9 C8 sing Y N 182 DG N9 C4 sing Y N 183 DG C8 N7 doub Y N 184 DG C8 H8 sing N N 185 DG N7 C5 sing Y N 186 DG C5 C6 sing N N 187 DG C5 C4 doub Y N 188 DG C6 O6 doub N N 189 DG C6 N1 sing N N 190 DG N1 C2 sing N N 191 DG N1 H1 sing N N 192 DG C2 N2 sing N N 193 DG C2 N3 doub N N 194 DG N2 H21 sing N N 195 DG N2 H22 sing N N 196 DG N3 C4 sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1FN1 'double helix' 1FN1 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 5 1_555 -0.422 -0.104 0.011 -8.993 5.109 1.438 1 A_DG1002:DC2005_B A 1002 ? B 2005 ? 19 1 1 A BRU 2 1_555 B DA 4 1_555 0.023 -0.122 0.225 1.924 -3.072 2.651 2 A_BRU1003:DA2004_B A 1003 ? B 2004 ? 20 1 1 A DA 3 1_555 B BRU 3 1_555 0.159 -0.139 -0.111 2.674 3.639 -4.728 3 A_DA1004:BRU2003_B A 1004 ? B 2003 ? 20 1 1 A DC 4 1_555 B DG 2 1_555 0.355 -0.071 -0.166 13.466 -1.144 3.992 4 A_DC1005:DG2002_B A 1005 ? B 2002 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 5 1_555 A BRU 2 1_555 B DA 4 1_555 -0.148 -0.313 3.128 -1.201 3.330 27.278 -1.437 0.031 3.072 7.023 2.533 27.502 1 AA_DG1002BRU1003:DA2004DC2005_BB A 1002 ? B 2005 ? A 1003 ? B 2004 ? 1 A BRU 2 1_555 B DA 4 1_555 A DA 3 1_555 B BRU 3 1_555 -0.066 -0.502 3.160 3.535 1.648 37.609 -0.980 0.540 3.117 2.547 -5.464 37.804 2 AA_BRU1003DA1004:BRU2003DA2004_BB A 1003 ? B 2004 ? A 1004 ? B 2003 ? 1 A DA 3 1_555 B BRU 3 1_555 A DC 4 1_555 B DG 2 1_555 1.099 -0.692 3.156 -2.260 5.173 29.599 -2.320 -2.546 2.906 10.011 4.374 30.121 3 AA_DA1004DC1005:DG2002BRU2003_BB A 1004 ? B 2003 ? A 1005 ? B 2002 ? # _atom_sites.entry_id 1FN1 _atom_sites.fract_transf_matrix[1][1] 0.034626 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018808 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024743 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C CO N O P # loop_