HEADER OXYGEN STORAGE/TRANSPORT 20-AUG-00 1FN3 TITLE CRYSTAL STRUCTURE OF NICKEL RECONSTITUTED HEMOGLOBIN-A CASE FOR TITLE 2 PERMANENT, T-STATE HEMOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEMOGLOBIN BETA CHAIN; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS PERMANENT T-STATE, METAL ION COORDINATION, SUBUNIT INEQUIVALENCE, KEYWDS 2 SPECTROSCOPY, CRYSTALLOGRAPHY., OXYGEN STORAGE-TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.VENKATESHRAO,S.DEEPTHI,V.PATTABHI,P.T.MANOHARAN REVDAT 4 09-AUG-23 1FN3 1 REMARK LINK REVDAT 3 04-OCT-17 1FN3 1 REMARK REVDAT 2 24-FEB-09 1FN3 1 VERSN REVDAT 1 07-OCT-03 1FN3 0 JRNL AUTH S.VENKATESHRAO,S.DEEPTHI,V.PATTABHI,P.T.MANOHARAN JRNL TITL CRYSTAL STRUCTURE OF NICKEL RECONSTITUTED HEMOGLOBIN - A JRNL TITL 2 CASE FOR PERMANENT, T-STATE HEMOGLOBIN JRNL REF CURR.SCI. V. 84 179 2003 JRNL REFN ISSN 0011-3891 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BRUNO,S.BETTATI,M.MANFREDINI,A.MOZZARELLI,M.BOLOGNESI, REMARK 1 AUTH 2 D.DERIU,C.ROSANO,A.TSUNESHIGE,T.YONETANI,E.HENRY REMARK 1 TITL OXYGEN BINDING BY ALPHA(FE2+)2BETA(NI2+)2 HEMOGLOBIN REMARK 1 TITL 2 CRYSTALS REMARK 1 REF PROTEIN SCI. V. 9 683 2000 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.LIDDINGTON,Z.DEREWENDA,E.DODSON,R.HUBBARD,G.DODSON REMARK 1 TITL HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF REMARK 1 TITL 2 T-STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE REMARK 1 TITL 3 HAEMOGLOBINS:T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN REMARK 1 REF J.MOL.BIOL. V. 228 551 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.LUISI,B.LIDDINGTON,G.FERMI,N.SHIBAYAMA REMARK 1 TITL STRUCTURE OF DEOXY QUATERNARY HEMOGLOBIN WITH LIGANDED BETA REMARK 1 TITL 2 SUBUNITS REMARK 1 REF J.MOL.BIOL. V. 214 7 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 2888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.098 REMARK 3 FREE R VALUE TEST SET COUNT : 118 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.242 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR, XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.15490 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.75520 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1THB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.76000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.06900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.76000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.06900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL D 126 O HOH D 151 1.65 REMARK 500 O PHE B 45 ND2 ASN B 57 1.72 REMARK 500 N GLY B 56 O HOH B 148 1.84 REMARK 500 OE2 GLU C 116 O HOH C 150 1.85 REMARK 500 O ASP B 47 OD1 ASN B 57 1.86 REMARK 500 CA LYS C 127 O HOH A 156 1.93 REMARK 500 OH TYR B 35 O HOH B 150 1.94 REMARK 500 CB ALA B 115 O HOH B 154 1.97 REMARK 500 OE1 GLN A 54 O HOH A 153 2.00 REMARK 500 CD2 PHE B 122 O HOH B 154 2.01 REMARK 500 CB ALA C 88 O HOH C 144 2.01 REMARK 500 N HIS A 20 O HOH A 147 2.03 REMARK 500 O VAL B 54 O HOH B 148 2.04 REMARK 500 O VAL A 17 O HOH A 147 2.04 REMARK 500 O ASP C 85 N HIS C 87 2.06 REMARK 500 O LEU A 48 O HOH A 149 2.06 REMARK 500 NE1 TRP A 14 O HOH A 144 2.08 REMARK 500 CG2 VAL D 137 O HOH D 150 2.10 REMARK 500 O ASN D 102 O HOH D 148 2.12 REMARK 500 NH1 ARG A 141 O HOH A 156 2.13 REMARK 500 OD2 ASP B 99 OH TYR C 42 2.14 REMARK 500 OE2 GLU A 27 NZ LYS A 56 2.16 REMARK 500 CA PHE A 46 O HOH A 153 2.16 REMARK 500 O VAL C 135 OG SER C 138 2.16 REMARK 500 C VAL A 17 O HOH A 147 2.17 REMARK 500 O VAL A 135 OG SER A 138 2.17 REMARK 500 CD1 PHE D 71 O HOH D 150 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 88 CA ALA A 88 CB 0.197 REMARK 500 LYS B 59 CE LYS B 59 NZ -0.198 REMARK 500 LEU C 86 CA LEU C 86 C 0.274 REMARK 500 ALA C 88 CA ALA C 88 C -0.185 REMARK 500 LYS D 59 CE LYS D 59 NZ -0.207 REMARK 500 LYS D 95 CA LYS D 95 CB 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 25 N - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 PRO A 37 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 LEU A 86 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = 8.1 DEGREES REMARK 500 MET B 55 CB - CA - C ANGL. DEV. = 13.9 DEGREES REMARK 500 GLY B 56 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 ASN B 57 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 PRO B 58 C - N - CA ANGL. DEV. = -25.5 DEGREES REMARK 500 LYS B 82 CD - CE - NZ ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 104 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 GLY C 25 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 ASN C 68 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 HIS C 72 CA - CB - CG ANGL. DEV. = -10.7 DEGREES REMARK 500 SER C 84 CB - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 SER C 84 N - CA - CB ANGL. DEV. = -20.4 DEGREES REMARK 500 ASP C 85 N - CA - CB ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP C 85 OD1 - CG - OD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP C 85 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 85 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU C 86 CD1 - CG - CD2 ANGL. DEV. = -24.3 DEGREES REMARK 500 HIS C 87 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 HIS C 87 CB - CG - CD2 ANGL. DEV. = 9.7 DEGREES REMARK 500 HIS C 87 CB - CG - ND1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG D 40 CD - NE - CZ ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG D 40 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG D 40 NE - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG D 104 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG D 104 NE - CZ - NH1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG D 104 NE - CZ - NH2 ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 24 16.08 -65.28 REMARK 500 SER A 35 -69.58 -91.69 REMARK 500 PRO A 37 34.37 -99.51 REMARK 500 PHE A 46 -158.88 -57.32 REMARK 500 ALA A 53 2.61 -43.97 REMARK 500 LYS A 61 -61.94 -98.70 REMARK 500 HIS A 72 33.40 -94.14 REMARK 500 ASP A 75 63.68 -159.30 REMARK 500 LEU A 80 68.70 -155.38 REMARK 500 ASP A 85 -70.74 -78.27 REMARK 500 LEU A 86 -29.01 -26.50 REMARK 500 HIS A 89 -24.60 -146.17 REMARK 500 LYS A 90 -81.44 -114.35 REMARK 500 ASP A 94 105.75 59.49 REMARK 500 PRO A 95 -58.16 -26.16 REMARK 500 LEU A 100 7.63 -61.83 REMARK 500 LEU A 101 -3.33 -146.30 REMARK 500 PRO A 114 -77.45 -58.28 REMARK 500 GLU B 6 -80.15 -100.65 REMARK 500 GLU B 7 2.53 -55.91 REMARK 500 ALA B 13 72.51 -103.36 REMARK 500 LEU B 14 -13.05 179.62 REMARK 500 VAL B 20 -19.57 -43.29 REMARK 500 VAL B 34 -71.47 -74.35 REMARK 500 PRO B 36 27.98 -78.51 REMARK 500 PHE B 42 56.89 -112.06 REMARK 500 SER B 49 -99.53 -68.21 REMARK 500 ALA B 76 26.45 -142.15 REMARK 500 ASN B 80 29.06 -140.66 REMARK 500 HIS B 97 46.12 77.28 REMARK 500 LEU B 110 -5.53 -58.41 REMARK 500 PHE B 122 92.95 -60.80 REMARK 500 PRO B 125 2.05 -60.68 REMARK 500 LYS B 144 31.24 -89.84 REMARK 500 TYR C 24 20.62 -66.82 REMARK 500 SER C 35 -68.30 -90.76 REMARK 500 PRO C 37 33.38 -99.41 REMARK 500 PHE C 46 -158.20 -58.68 REMARK 500 ALA C 53 3.00 -44.91 REMARK 500 LYS C 56 -19.07 -48.13 REMARK 500 LYS C 61 -63.75 -98.75 REMARK 500 HIS C 72 34.54 -94.49 REMARK 500 ASP C 75 63.11 -159.04 REMARK 500 LEU C 80 68.14 -154.84 REMARK 500 ASP C 85 -69.63 -108.94 REMARK 500 LEU C 86 3.94 -40.77 REMARK 500 HIS C 89 -21.34 -145.27 REMARK 500 LYS C 90 -80.80 -115.13 REMARK 500 ASP C 94 109.15 60.61 REMARK 500 PRO C 95 -58.46 -29.59 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU C 86 HIS C 87 149.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS B 63 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNI D 147 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HNI D 147 NA 64.7 REMARK 620 3 HNI D 147 NB 72.6 86.0 REMARK 620 4 HNI D 147 NC 115.9 173.2 87.8 REMARK 620 5 HNI D 147 ND 109.5 96.3 177.4 89.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HNI A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HNI B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HNI C 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HNI D 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKE RELATED DB: PDB REMARK 900 1DKE CONTAINS THE SAME PROTEIN WITH CARBONMONOXY FE(II)AT THE ALPHA REMARK 900 CHAINS, AND NI(II) RECONSTITUTED AT THE TWO BETA CHAINS REMARK 900 RELATED ID: 1HGA RELATED DB: PDB REMARK 900 1HGA CONTAINS THE SAME PROTEIN WITH ALL FOUR DEOXY FE(II)HEME REMARK 900 SUBUNITS. REMARK 900 RELATED ID: 1NIH RELATED DB: PDB REMARK 900 1NIH CONTAINS THE SAME PROTEIN WITH NI(II) RECONSTITUTED AT THE REMARK 900 ALPHA SUBUNITS AND FE(II) AT THE BETA SUBUNITS. DBREF 1FN3 A 1 141 UNP P69905 HBA_HUMAN 1 141 DBREF 1FN3 B 1 146 UNP P68871 HBB_HUMAN 1 146 DBREF 1FN3 C 1 141 UNP P69905 HBA_HUMAN 1 141 DBREF 1FN3 D 1 146 UNP P68871 HBB_HUMAN 1 146 SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS HET HNI A 142 43 HET HNI B 147 43 HET HNI C 142 43 HET HNI D 147 43 HETNAM HNI PROTOPORPHYRIN IX CONTAINING NI(II) FORMUL 5 HNI 4(C34 H32 N4 NI O4) FORMUL 9 HOH *38(H2 O) HELIX 1 1 SER A 3 TRP A 14 1 12 HELIX 2 2 GLY A 15 ALA A 21 5 7 HELIX 3 3 GLY A 22 PHE A 36 1 15 HELIX 4 4 GLN A 54 ALA A 63 1 10 HELIX 5 5 ALA A 63 HIS A 72 1 10 HELIX 6 6 VAL A 73 ALA A 79 5 7 HELIX 7 7 LEU A 80 HIS A 87 1 8 HELIX 8 8 ASP A 94 LEU A 100 1 7 HELIX 9 9 LEU A 106 ALA A 111 1 6 HELIX 10 10 THR A 118 LEU A 136 1 19 HELIX 11 11 THR A 137 TYR A 140 5 4 HELIX 12 12 VAL B 23 LEU B 32 1 10 HELIX 13 13 ASN B 57 VAL B 67 1 11 HELIX 14 14 LEU B 68 ASP B 73 1 6 HELIX 15 15 ASN B 80 PHE B 85 1 6 HELIX 16 16 GLU B 101 VAL B 113 1 13 HELIX 17 17 VAL B 113 GLY B 119 1 7 HELIX 18 18 LYS B 120 PHE B 122 5 3 HELIX 19 19 THR B 123 ALA B 135 1 13 HELIX 20 20 GLY B 136 LEU B 141 1 6 HELIX 21 21 SER C 3 TRP C 14 1 12 HELIX 22 22 GLY C 15 ALA C 21 5 7 HELIX 23 23 GLY C 22 PHE C 36 1 15 HELIX 24 24 GLN C 54 ALA C 63 1 10 HELIX 25 25 ALA C 63 HIS C 72 1 10 HELIX 26 26 VAL C 73 ALA C 79 5 7 HELIX 27 27 LEU C 80 LEU C 86 1 7 HELIX 28 28 ASP C 94 LEU C 100 1 7 HELIX 29 29 LEU C 106 ALA C 111 1 6 HELIX 30 30 THR C 118 LEU C 136 1 19 HELIX 31 31 THR C 137 TYR C 140 5 4 HELIX 32 32 VAL D 23 LEU D 32 1 10 HELIX 33 33 ASN D 57 VAL D 67 1 11 HELIX 34 34 LEU D 68 ASP D 73 1 6 HELIX 35 35 ASN D 80 PHE D 85 1 6 HELIX 36 36 GLU D 101 VAL D 113 1 13 HELIX 37 37 VAL D 113 GLY D 119 1 7 HELIX 38 38 LYS D 120 PHE D 122 5 3 HELIX 39 39 THR D 123 ALA D 135 1 13 HELIX 40 40 GLY D 136 LEU D 141 1 6 LINK NE2 HIS D 92 NI HNI D 147 1555 1555 3.07 SITE 1 AC1 14 THR A 39 TYR A 42 PHE A 43 HIS A 45 SITE 2 AC1 14 PHE A 46 HIS A 58 LYS A 61 LEU A 83 SITE 3 AC1 14 LEU A 86 ASN A 97 PHE A 98 SER A 133 SITE 4 AC1 14 HOH A 151 HOH A 152 SITE 1 AC2 12 HIS A 72 ASP A 74 THR B 38 PHE B 41 SITE 2 AC2 12 PHE B 42 HIS B 63 VAL B 67 LEU B 88 SITE 3 AC2 12 HIS B 92 LEU B 96 ASN B 102 LEU B 106 SITE 1 AC3 13 LYS B 17 GLU B 121 THR C 39 HIS C 45 SITE 2 AC3 13 PHE C 46 HIS C 58 LYS C 61 LEU C 83 SITE 3 AC3 13 LEU C 91 VAL C 93 ASN C 97 PHE C 98 SITE 4 AC3 13 SER C 133 SITE 1 AC4 14 LYS C 56 THR D 38 PHE D 41 PHE D 42 SITE 2 AC4 14 HIS D 63 LEU D 88 LEU D 91 HIS D 92 SITE 3 AC4 14 LEU D 96 ASN D 102 PHE D 103 LEU D 106 SITE 4 AC4 14 VAL D 137 LEU D 141 CRYST1 95.520 96.138 65.190 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010469 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015340 0.00000