HEADER ELECTRON TRANSPORT 27-AUG-00 1FOC TITLE CYTOCHROME C557: IMPROPERLY FOLDED THERMUS THERMOPHILUS C552 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME RC557; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HEME INVERSION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS CYTOCHROME C, THERMUS THERMOPHILUS, HEME INVERSION, ELECTRON KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.E.MCREE,P.A.WILLIAMS,J.A.FEE,K.L.BREN REVDAT 7 03-MAR-21 1FOC 1 COMPND REMARK HET HETNAM REVDAT 7 2 1 HETSYN FORMUL LINK SITE REVDAT 7 3 1 ATOM REVDAT 6 31-JAN-18 1FOC 1 REMARK REVDAT 5 13-JUL-11 1FOC 1 VERSN REVDAT 4 24-FEB-09 1FOC 1 VERSN REVDAT 3 31-MAY-05 1FOC 1 JRNL REMARK REVDAT 2 09-OCT-02 1FOC 1 REMARK DBREF MASTER REVDAT 1 08-NOV-00 1FOC 0 JRNL AUTH D.E.MCREE,P.A.WILLIAMS,V.SRIDHAR,A.PASTUSZYN,K.L.BREN, JRNL AUTH 2 Y.CHEN,K.M.PATEL,T.R.TODARO,D.SANDERS,E.LUNA,J.A.FEE JRNL TITL RECOMBINANT CYTOCHROME RC557 OBTAINED FROM ESCHERICHIA COLI JRNL TITL 2 CELLS EXPRESSING A TRUNCATED THERMUS THERMOPHILUS CYCA GENE. JRNL TITL 3 HEME INVERSION IN AN IMPROPERLY MATURED PROTEIN JRNL REF J.BIOL.CHEM. V. 276 6537 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11069913 JRNL DOI 10.1074/JBC.M008421200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.SRIDHAR,A.PASTUSZYN,K.M.PATEL,Y.CHEN,T.R.TODARO REMARK 1 TITL INTEGRITY OF THERMUS THERMOPHILUS CYTOCHROME C552 REMARK 1 TITL 2 SYNTHESIZED BY ESCHERICHIA COLI CELLS EXPRESSING THE REMARK 1 TITL 3 HOST-SPECIFIC CYTOCHROME C MATURATION GENES, CCMABCDEFGH: REMARK 1 TITL 4 BIOCHEMICAL, SPECTRAL AND STRUCTURAL CHARACTERIZATION OF THE REMARK 1 TITL 5 RECOMBINANT PROTEIN REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 5278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.423 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1944 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 114.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-00; 10-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL9-2; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.7389; 1.4586 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5309 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42-46% MPEG 2K (W/V), 0.1M NA REMARK 280 CACODYLATE PH 7.0, 50MM NACL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 24K, TEMPERATURE 297.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTED FROM CHAINS REMARK 300 A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ALA B 0 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 40 CD OE1 OE2 REMARK 480 GLN A 57 CD OE1 NE2 REMARK 480 LYS A 64 CD CE NZ REMARK 480 GLU A 78 CD OE1 OE2 REMARK 480 LYS A 95 CE NZ REMARK 480 GLU A 106 CG CD OE1 OE2 REMARK 480 LYS A 110 CE NZ REMARK 480 LYS A 131 N CA C O CB CG CD REMARK 480 LYS A 131 CE NZ REMARK 480 GLU B 40 CD OE1 OE2 REMARK 480 GLN B 57 CD OE1 NE2 REMARK 480 LYS B 64 CD CE NZ REMARK 480 GLU B 78 CD OE1 OE2 REMARK 480 LYS B 95 CE NZ REMARK 480 GLU B 106 CG CD OE1 OE2 REMARK 480 LYS B 110 CE NZ REMARK 480 LYS B 131 N CA C O CB CG CD REMARK 480 LYS B 131 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 80 N ALA A 82 1.85 REMARK 500 O PRO B 23 N ALA B 25 1.90 REMARK 500 O THR B 104 N GLU B 106 1.96 REMARK 500 O TYR B 45 N LEU B 48 1.99 REMARK 500 O ALA B 82 N ASN B 85 2.00 REMARK 500 O ALA A 34 N LEU A 37 2.00 REMARK 500 O ALA B 113 N LYS B 115 2.09 REMARK 500 O LYS A 95 O VAL A 97 2.09 REMARK 500 O GLY B 41 N ARG B 43 2.11 REMARK 500 O LEU A 51 OG SER A 71 2.11 REMARK 500 O GLU B 44 N ILE B 47 2.12 REMARK 500 O THR A 117 N GLN A 120 2.12 REMARK 500 O ALA A 82 N LEU A 84 2.12 REMARK 500 O CYS B 11 O GLY B 13 2.13 REMARK 500 O ASP A 93 N LYS A 95 2.14 REMARK 500 O THR A 117 N GLN A 119 2.18 REMARK 500 O LYS B 127 N GLY B 129 2.19 REMARK 500 O LYS A 98 N PHE A 100 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 44 C TYR A 45 N 0.214 REMARK 500 MET A 63 SD MET A 63 CE 0.437 REMARK 500 PHE A 72 CZ PHE A 72 CE2 0.122 REMARK 500 VAL A 108 CA VAL A 108 CB -0.128 REMARK 500 VAL A 121 CA VAL A 121 CB -0.132 REMARK 500 VAL A 121 CB VAL A 121 CG1 -0.213 REMARK 500 GLY B 4 N GLY B 4 CA 0.093 REMARK 500 ASN B 66 CB ASN B 66 CG 0.158 REMARK 500 VAL B 68 CB VAL B 68 CG1 -0.145 REMARK 500 MET B 69 SD MET B 69 CE -0.350 REMARK 500 ALA B 88 CA ALA B 88 CB 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 37 CA - CB - CG ANGL. DEV. = -17.9 DEGREES REMARK 500 GLU A 44 C - N - CA ANGL. DEV. = 20.1 DEGREES REMARK 500 PRO A 118 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 GLY B 13 N - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 ASN B 18 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO B 28 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 LEU B 37 CA - CB - CG ANGL. DEV. = -18.3 DEGREES REMARK 500 LEU B 50 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 VAL B 68 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 LEU B 122 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 125 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 125 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 -22.46 -173.12 REMARK 500 CYS A 14 -99.12 51.62 REMARK 500 GLN A 16 150.59 52.41 REMARK 500 ILE A 22 59.33 -162.30 REMARK 500 PRO A 23 131.06 -23.02 REMARK 500 ALA A 30 104.61 -38.37 REMARK 500 GLU A 35 -14.89 -43.85 REMARK 500 ALA A 38 -105.89 -67.36 REMARK 500 LYS A 39 107.16 -14.85 REMARK 500 ILE A 47 -46.91 -26.06 REMARK 500 LEU A 48 -79.04 -54.43 REMARK 500 VAL A 49 -55.45 -20.58 REMARK 500 GLN A 57 135.02 -19.97 REMARK 500 ASN A 66 -12.30 -148.68 REMARK 500 ALA A 73 34.18 31.28 REMARK 500 ASP A 77 -37.62 -29.45 REMARK 500 GLU A 78 -107.08 -62.54 REMARK 500 GLU A 79 -63.61 4.43 REMARK 500 ILE A 80 -110.08 -60.47 REMARK 500 ALA A 81 -43.10 30.55 REMARK 500 ALA A 82 -69.58 -90.60 REMARK 500 VAL A 83 27.53 -48.23 REMARK 500 LEU A 84 -61.70 -131.91 REMARK 500 ALA A 90 36.81 -54.31 REMARK 500 TRP A 91 12.87 -173.54 REMARK 500 ASP A 93 -52.57 -159.98 REMARK 500 ALA A 94 -11.91 -46.16 REMARK 500 LYS A 95 -123.74 -75.62 REMARK 500 LYS A 96 -57.82 0.09 REMARK 500 PRO A 102 -157.22 -59.65 REMARK 500 LYS A 114 -39.05 -25.49 REMARK 500 LYS A 115 75.34 22.88 REMARK 500 LEU A 116 -165.44 -101.76 REMARK 500 PRO A 118 -17.83 -26.38 REMARK 500 LYS A 127 -37.49 -34.02 REMARK 500 LEU A 130 -154.40 -178.98 REMARK 500 ALA B 5 -13.44 176.17 REMARK 500 GLN B 10 2.26 -42.57 REMARK 500 CYS B 14 -133.47 84.41 REMARK 500 GLN B 16 -172.90 74.09 REMARK 500 ILE B 22 81.78 -166.40 REMARK 500 PRO B 23 157.62 31.87 REMARK 500 ALA B 25 -90.65 -90.78 REMARK 500 HIS B 32 -8.94 -23.05 REMARK 500 ALA B 38 43.50 -70.37 REMARK 500 GLU B 44 -85.63 -81.01 REMARK 500 TYR B 45 -57.89 0.86 REMARK 500 VAL B 60 71.57 -113.50 REMARK 500 LYS B 61 23.79 45.48 REMARK 500 SER B 70 161.05 -34.75 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 65 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HEC A 200 NA 82.4 REMARK 620 3 HEC A 200 NB 88.9 90.4 REMARK 620 4 HEC A 200 NC 88.0 170.5 89.3 REMARK 620 5 HEC A 200 ND 81.9 91.1 170.4 87.7 REMARK 620 6 MET A 69 SD 176.6 100.1 93.3 89.4 95.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 HEC B 200 NA 80.7 REMARK 620 3 HEC B 200 NB 95.9 91.0 REMARK 620 4 HEC B 200 NC 89.9 170.4 92.3 REMARK 620 5 HEC B 200 ND 76.4 90.8 171.7 84.7 REMARK 620 6 MET B 69 SD 161.6 91.4 100.8 96.9 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DT1 RELATED DB: PDB REMARK 900 THE STRUCTURE OF CYTOCHROME C552 FROM RECOMBINANT SOURCES REMARK 900 RELATED ID: 1C52 RELATED DB: PDB REMARK 900 THE STRUCTURE OF NATIVE CYTOCHROME C552 FROM THERMUS THERMOPHILUS DBREF 1FOC A 0 131 UNP P04164 CY552_THETH 17 148 DBREF 1FOC B 0 131 UNP P04164 CY552_THETH 17 148 SEQRES 1 A 132 ALA GLN ALA ASP GLY ALA LYS ILE TYR ALA GLN CYS ALA SEQRES 2 A 132 GLY CYS HIS GLN GLN ASN GLY GLN GLY ILE PRO GLY ALA SEQRES 3 A 132 PHE PRO PRO LEU ALA GLY HIS VAL ALA GLU ILE LEU ALA SEQRES 4 A 132 LYS GLU GLY GLY ARG GLU TYR LEU ILE LEU VAL LEU LEU SEQRES 5 A 132 TYR GLY LEU GLN GLY GLN ILE GLU VAL LYS GLY MET LYS SEQRES 6 A 132 TYR ASN GLY VAL MET SER SER PHE ALA GLN LEU LYS ASP SEQRES 7 A 132 GLU GLU ILE ALA ALA VAL LEU ASN HIS ILE ALA THR ALA SEQRES 8 A 132 TRP GLY ASP ALA LYS LYS VAL LYS GLY PHE LYS PRO PHE SEQRES 9 A 132 THR ALA GLU GLU VAL LYS LYS LEU ARG ALA LYS LYS LEU SEQRES 10 A 132 THR PRO GLN GLN VAL LEU ALA GLU ARG LYS LYS LEU GLY SEQRES 11 A 132 LEU LYS SEQRES 1 B 132 ALA GLN ALA ASP GLY ALA LYS ILE TYR ALA GLN CYS ALA SEQRES 2 B 132 GLY CYS HIS GLN GLN ASN GLY GLN GLY ILE PRO GLY ALA SEQRES 3 B 132 PHE PRO PRO LEU ALA GLY HIS VAL ALA GLU ILE LEU ALA SEQRES 4 B 132 LYS GLU GLY GLY ARG GLU TYR LEU ILE LEU VAL LEU LEU SEQRES 5 B 132 TYR GLY LEU GLN GLY GLN ILE GLU VAL LYS GLY MET LYS SEQRES 6 B 132 TYR ASN GLY VAL MET SER SER PHE ALA GLN LEU LYS ASP SEQRES 7 B 132 GLU GLU ILE ALA ALA VAL LEU ASN HIS ILE ALA THR ALA SEQRES 8 B 132 TRP GLY ASP ALA LYS LYS VAL LYS GLY PHE LYS PRO PHE SEQRES 9 B 132 THR ALA GLU GLU VAL LYS LYS LEU ARG ALA LYS LYS LEU SEQRES 10 B 132 THR PRO GLN GLN VAL LEU ALA GLU ARG LYS LYS LEU GLY SEQRES 11 B 132 LEU LYS HET HEC A 200 43 HET HEC B 200 43 HETNAM HEC HEME C FORMUL 3 HEC 2(C34 H34 FE N4 O4) HELIX 1 1 LYS A 6 CYS A 11 1 6 HELIX 2 2 GLY A 31 ALA A 38 1 8 HELIX 3 3 GLY A 41 GLY A 53 1 13 HELIX 4 4 ALA A 81 ALA A 90 1 10 HELIX 5 5 THR A 104 ALA A 113 1 10 HELIX 6 6 GLN A 119 GLY A 129 1 11 HELIX 7 7 LYS B 6 CYS B 11 5 6 HELIX 8 8 HIS B 32 ALA B 38 1 7 HELIX 9 9 TYR B 45 GLY B 53 1 9 HELIX 10 10 GLU B 78 TRP B 91 1 14 HELIX 11 11 THR B 104 LYS B 110 1 7 HELIX 12 12 THR B 117 GLY B 129 1 13 SHEET 1 A 2 ILE A 58 GLU A 59 0 SHEET 2 A 2 LYS A 64 TYR A 65 -1 N TYR A 65 O ILE A 58 SHEET 1 B 2 LEU B 54 GLN B 55 0 SHEET 2 B 2 VAL B 68 MET B 69 -1 N MET B 69 O LEU B 54 SHEET 1 C 2 ILE B 58 VAL B 60 0 SHEET 2 C 2 MET B 63 TYR B 65 -1 O MET B 63 N VAL B 60 SSBOND 1 CYS A 11 CYS B 11 1555 1555 2.05 LINK SG CYS A 14 CBB HEC A 200 1555 1555 1.70 LINK SG CYS A 14 CAB HEC A 200 1555 1555 1.89 LINK SG CYS B 14 CAB HEC B 200 1555 1555 1.87 LINK NE2 HIS A 15 FE HEC A 200 1555 1555 2.13 LINK SD MET A 69 FE HEC A 200 1555 1555 2.34 LINK NE2 HIS B 15 FE HEC B 200 1555 1555 2.01 LINK SD MET B 69 FE HEC B 200 1555 1555 2.16 SITE 1 AC1 20 CYS A 11 CYS A 14 HIS A 15 PHE A 26 SITE 2 AC1 20 HIS A 32 TYR A 45 LEU A 46 LEU A 50 SITE 3 AC1 20 GLN A 55 GLY A 56 ILE A 58 VAL A 60 SITE 4 AC1 20 ASN A 66 GLY A 67 VAL A 68 MET A 69 SITE 5 AC1 20 VAL A 83 ILE A 87 ARG A 125 HEC B 200 SITE 1 AC2 21 CYS A 11 HEC A 200 CYS B 14 HIS B 15 SITE 2 AC2 21 ALA B 25 PHE B 26 PRO B 27 LEU B 29 SITE 3 AC2 21 HIS B 32 TYR B 45 LEU B 50 LEU B 54 SITE 4 AC2 21 GLN B 55 GLY B 56 GLY B 67 VAL B 68 SITE 5 AC2 21 MET B 69 PHE B 72 VAL B 83 ILE B 87 SITE 6 AC2 21 ARG B 125 CRYST1 98.720 69.050 36.582 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010130 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027336 0.00000