HEADER HYDROLASE/HYDROLASE INHIBITOR 16-OCT-94 1FPC
TITLE ACTIVE SITE MIMETIC INHIBITION OF THROMBIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: THROMBIN;
COMPND 3 CHAIN: L;
COMPND 4 SYNONYM: COAGULATION FACTOR II;
COMPND 5 EC: 3.4.21.5;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: THROMBIN;
COMPND 8 CHAIN: H;
COMPND 9 SYNONYM: COAGULATION FACTOR II;
COMPND 10 EC: 3.4.21.5;
COMPND 11 MOL_ID: 3;
COMPND 12 MOLECULE: HIRUDIN;
COMPND 13 CHAIN: I;
COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 ORGAN: BLOOD;
SOURCE 6 TISSUE: BLOOD;
SOURCE 7 MOL_ID: 2;
SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 9 ORGANISM_COMMON: HUMAN;
SOURCE 10 ORGANISM_TAXID: 9606;
SOURCE 11 ORGAN: BLOOD;
SOURCE 12 TISSUE: BLOOD;
SOURCE 13 MOL_ID: 3;
SOURCE 14 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS;
SOURCE 15 ORGANISM_COMMON: MEDICINAL LEECH;
SOURCE 16 ORGANISM_TAXID: 6421
KEYWDS SERINE PROTEASE-INHIBITOR COMPLEX, HYDROLASE-HYDROLASE INHIBITOR
KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.TULINSKY,I.I.MATHEWS
REVDAT 5 30-OCT-24 1FPC 1 REMARK
REVDAT 4 05-JUN-24 1FPC 1 REMARK SEQADV
REVDAT 3 13-JUL-11 1FPC 1 VERSN
REVDAT 2 24-FEB-09 1FPC 1 VERSN
REVDAT 1 27-FEB-95 1FPC 0
JRNL AUTH I.I.MATHEWS,A.TULINSKY
JRNL TITL ACTIVE-SITE MIMETIC INHIBITION OF THROMBIN.
JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 51 550 1995
JRNL REFN ISSN 0907-4449
JRNL PMID 15299843
JRNL DOI 10.1107/S0907444994013132
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH T.-P.WU,V.YEE,A.TULINSKY,R.A.CHRUSCIEL,H.NAKANISHI,R.SHEN,
REMARK 1 AUTH 2 C.PRIEBE,M.KAHN
REMARK 1 TITL THE STRUCTURE OF A DESIGNED PEPTIDOMIMETIC INHIBITOR COMPLEX
REMARK 1 TITL 2 OF ALPHA-THROMBIN
REMARK 1 REF PROTEIN ENG. V. 6 471 1993
REMARK 1 REFN ISSN 0269-2139
REMARK 1 REFERENCE 2
REMARK 1 AUTH A.TULINSKY,X.QIU
REMARK 1 TITL ACTIVE SITE AND EXOSITE BINDING OF ALPHA-THROMBIN
REMARK 1 REF BLOOD COAGULATION V. 4 305 1993
REMARK 1 REF 2 FIBRINOLYSIS
REMARK 1 REFN ISSN 0957-5235
REMARK 1 REFERENCE 3
REMARK 1 AUTH M.E.NESHEIM,F.G.PRENDERGAST,K.G.MANN
REMARK 1 TITL INTERACTIONS OF A FLUORESCENT ACTIVE-SITE-DIRECTED INHIBITOR
REMARK 1 TITL 2 OF THROMBIN: DANSYLARGININE N-(3-ETHYL-1,5-PENTANEDIYL)AMIDE
REMARK 1 REF BIOCHEMISTRY V. 18 996 1979
REMARK 1 REFN ISSN 0006-2960
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PROLSQ
REMARK 3 AUTHORS : KONNERT,HENDRICKSON
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : NULL
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : 0.147
REMARK 3 R VALUE (WORKING SET) : NULL
REMARK 3 FREE R VALUE : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : NULL
REMARK 3
REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA.
REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL
REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE (NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL
REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2291
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 35
REMARK 3 SOLVENT ATOMS : 201
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA
REMARK 3 BOND LENGTH (A) : 0.200 ; NULL
REMARK 3 ANGLE DISTANCE (A) : 5.700 ; NULL
REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL
REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL
REMARK 3
REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL
REMARK 3
REMARK 3 NON-BONDED CONTACT RESTRAINTS.
REMARK 3 SINGLE TORSION (A) : NULL ; NULL
REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL
REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL
REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL
REMARK 3
REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS.
REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL
REMARK 3 PLANAR (DEGREES) : NULL ; NULL
REMARK 3 STAGGERED (DEGREES) : NULL ; NULL
REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1FPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000173362.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : NULL
REMARK 200 RADIATION SOURCE : NULL
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL
REMARK 200 WAVELENGTH OR RANGE (A) : NULL
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : NULL
REMARK 200 DETECTOR MANUFACTURER : NULL
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL
REMARK 200 RESOLUTION RANGE HIGH (A) : NULL
REMARK 200 RESOLUTION RANGE LOW (A) : NULL
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : NULL
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: NULL
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.11
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.05000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.30000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.05000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.30000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12040 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH H 409 LIES ON A SPECIAL POSITION.
REMARK 400
REMARK 400 COMPOUND
REMARK 400 THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN
REMARK 400 IDENTIFIER *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN
REMARK 400 IDENTIFIER *H* IS USED FOR RESIDUES 16 - 247. CHAIN
REMARK 400 IDENTIFIER *I* IS USED FOR HIRUGEN, THE CARBOXYL TERMINUS
REMARK 400 OF HIRUDIN, WHICH OCCUPIES THE EXOSITE.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 THR L 1H
REMARK 465 PHE L 1G
REMARK 465 GLY L 1F
REMARK 465 SER L 1E
REMARK 465 GLY L 1D
REMARK 465 GLU L 1C
REMARK 465 ALA L 1B
REMARK 465 ASP L 14L
REMARK 465 GLY L 14M
REMARK 465 ARG L 14N
REMARK 465 THR H 146A
REMARK 465 TRP H 146B
REMARK 465 THR H 146C
REMARK 465 ALA H 146D
REMARK 465 ASN H 146E
REMARK 465 VAL H 146F
REMARK 465 GLY H 146G
REMARK 465 LYS H 146H
REMARK 465 PHE H 245
REMARK 465 GLY H 246
REMARK 465 GLU H 247
REMARK 465 ASN I 53
REMARK 465 GLY I 54
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG L 14D CD NE CZ NH1 NH2
REMARK 470 LYS H 110 CG CD CE NZ
REMARK 470 LYS H 145 CG CD CE NZ
REMARK 470 LYS H 240 CD CE NZ
REMARK 470 ASP H 243 CG OD1 OD2
REMARK 470 GLU I 61 CB CG CD OE1 OE2
REMARK 470 GLU I 62 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 NH1 ARG H 50 OE1 GLU H 86 2.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG L 4 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES
REMARK 500 ASP H 21 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES
REMARK 500 ALA H 22 N - CA - CB ANGL. DEV. = -8.7 DEGREES
REMARK 500 ARG H 35 NH1 - CZ - NH2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 ARG H 35 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES
REMARK 500 CYS H 42 CA - CB - SG ANGL. DEV. = 8.9 DEGREES
REMARK 500 ASP H 49 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 ARG H 50 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES
REMARK 500 TYR H 60A CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES
REMARK 500 TYR H 60A CB - CG - CD1 ANGL. DEV. = -7.7 DEGREES
REMARK 500 ARG H 67 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES
REMARK 500 ARG H 73 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES
REMARK 500 THR H 74 N - CA - CB ANGL. DEV. = -12.6 DEGREES
REMARK 500 ARG H 77A N - CA - CB ANGL. DEV. = 12.4 DEGREES
REMARK 500 ARG H 77A NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES
REMARK 500 ARG H 77A CA - C - O ANGL. DEV. = -19.0 DEGREES
REMARK 500 ARG H 77A CA - C - N ANGL. DEV. = 20.8 DEGREES
REMARK 500 TYR H 94 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES
REMARK 500 ARG H 97 CD - NE - CZ ANGL. DEV. = -9.2 DEGREES
REMARK 500 ARG H 97 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES
REMARK 500 ARG H 101 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES
REMARK 500 ARG H 101 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES
REMARK 500 ASP H 102 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES
REMARK 500 ASP H 116 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES
REMARK 500 ASP H 125 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES
REMARK 500 ASP H 125 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES
REMARK 500 ARG H 126 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES
REMARK 500 ALA H 129A N - CA - CB ANGL. DEV. = 10.2 DEGREES
REMARK 500 ARG H 165 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 ARG H 165 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES
REMARK 500 ARG H 173 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES
REMARK 500 ARG H 173 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES
REMARK 500 ARG H 175 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES
REMARK 500 ILE H 176 CA - CB - CG2 ANGL. DEV. = 12.7 DEGREES
REMARK 500 TYR H 184A CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES
REMARK 500 ARG H 187 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES
REMARK 500 ARG H 187 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES
REMARK 500 GLU H 192 CA - CB - CG ANGL. DEV. = 15.0 DEGREES
REMARK 500 ARG H 206 CD - NE - CZ ANGL. DEV. = 56.3 DEGREES
REMARK 500 TYR H 208 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES
REMARK 500 ARG H 221A CD - NE - CZ ANGL. DEV. = -11.1 DEGREES
REMARK 500 ARG H 221A NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES
REMARK 500 ARG H 221A NE - CZ - NH1 ANGL. DEV. = -10.2 DEGREES
REMARK 500 ARG H 221A NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES
REMARK 500 ARG H 233 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES
REMARK 500 ARG H 233 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE L 7 -76.28 -138.83
REMARK 500 SER H 36A 107.49 -166.65
REMARK 500 TYR H 60A 78.83 -153.28
REMARK 500 ASN H 60G 79.67 -169.75
REMARK 500 HIS H 71 -50.42 -130.79
REMARK 500 GLU H 97A -51.82 -131.77
REMARK 500 SER H 115 -177.69 -173.29
REMARK 500 SER H 195 136.74 -31.19
REMARK 500 SER H 214 -96.29 -85.93
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 TYR H 94 0.07 SIDE CHAIN
REMARK 500 ARG H 165 0.12 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 ARG H 233 10.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 630
REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR
REMARK 630 MOLECULE NAME: AMINO{[(4S)-4-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]
REMARK 630 SULFONYL}AMINO)-5-(4-ETHYLPIPERIDIN-1-YL)-5-OXOPENTYL]AMINO}
REMARK 630 METHANIMINIUM
REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 630
REMARK 630 M RES C SSSEQI
REMARK 630 0ZI H 371
REMARK 630 SOURCE: NULL
REMARK 630 TAXONOMY: NULL
REMARK 630 SUBCOMP: ANS ARG EPI
REMARK 630 DETAILS: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0ZI H 371
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN I OF HIRUDIN
DBREF 1FPC L 1H 14N UNP P00734 THRB_HUMAN 328 363
DBREF 1FPC H 16 247 UNP P00734 THRB_HUMAN 364 622
DBREF 1FPC I 53 64 UNP P28504 HIR2_HIRME 53 64
SEQADV 1FPC ASN I 53 UNP P28504 ASP 53 CONFLICT
SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO
SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG
SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG
SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO
SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU
SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU
SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS
SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS
SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE
SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN
SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS
SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO
SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU
SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN
SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN
SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU
SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR
SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY
SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO
SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN
SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP
SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS
SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU
SEQRES 1 I 12 ASN GLY ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU
MODRES 1FPC TYS I 63 TYR O-SULFO-L-TYROSINE
HET TYS I 63 16
HET 0ZI H 371 35
HETNAM TYS O-SULFO-L-TYROSINE
HETNAM 0ZI AMINO{[(4S)-4-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-
HETNAM 2 0ZI YL]SULFONYL}AMINO)-5-(4-ETHYLPIPERIDIN-1-YL)-5-
HETNAM 3 0ZI OXOPENTYL]AMINO}METHANIMINIUM
HETSYN 0ZI DAPA
FORMUL 3 TYS C9 H11 N O6 S
FORMUL 4 0ZI C25 H39 N6 O3 S 1+
FORMUL 5 HOH *201(H2 O)
HELIX 1 H1 ALA H 55 LEU H 60 1 6
HELIX 2 H2 GLU H 164 SER H 171 1 8
HELIX 3 H3 ASP H 125 LEU H 129C 1 8
HELIX 4 H4 VAL H 231 GLN H 244 1 14
SHEET 1 B1 7 PRO H 28 ARG H 35 0
SHEET 2 B1 7 CYS H 42 ASP H 49 -1
SHEET 3 B1 7 ARG H 50 ALA H 56 -1
SHEET 4 B1 7 ARG H 101 LYS H 110 -1
SHEET 5 B1 7 LYS H 81 PRO H 92 -1
SHEET 6 B1 7 ASP H 63 GLY H 69 -1
SHEET 7 B1 7 PRO H 28 ARG H 35 -1
SHEET 1 B2 7 GLY H 133 TRP H 141 0
SHEET 2 B2 7 LEU H 155 ILE H 162 -1
SHEET 3 B2 7 ASN H 179 PRO H 186 -1
SHEET 4 B2 7 GLY H 223 THR H 229 -1
SHEET 5 B2 7 ILE H 212 GLU H 217 -1
SHEET 6 B2 7 GLY H 193 MET H 201 -1
SHEET 7 B2 7 GLY H 133 TRP H 141 -1
SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.04
SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.04
SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.04
SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.14
CISPEP 1 SER H 36A PRO H 37 0 -1.61
SITE 1 AC1 16 HIS H 57 TYR H 60A LYS H 60F GLU H 97A
SITE 2 AC1 16 LEU H 99 ASP H 189 ALA H 190 CYS H 191
SITE 3 AC1 16 GLU H 192 TRP H 215 GLY H 216 GLY H 219
SITE 4 AC1 16 CYS H 220 HOH H 454 HOH H 476 HOH H 564
SITE 1 AC2 16 PHE H 34 LYS H 36 GLN H 38 ARG H 73
SITE 2 AC2 16 THR H 74 ARG H 75 TYR H 76 GLU H 80
SITE 3 AC2 16 LYS H 81 ILE H 82 MET H 84 SER H 153
SITE 4 AC2 16 HOH H 462 HOH H 488 HOH I 487 HOH I 526
CRYST1 72.100 72.600 73.800 90.00 101.00 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013870 0.000000 0.002696 0.00000
SCALE2 0.000000 0.013774 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013804 0.00000