HEADER SIGNALING PROTEIN 08-SEP-00 1FSH TITLE STRUCTURAL BASIS OF THE RECOGNITION OF THE DISHEVELLED DEP DOMAIN IN TITLE 2 THE WNT SIGNALING PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISHEVELLED-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEP DOMAIN (RESIDUES 391-495); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE31 KEYWDS THREE-HELIX BUNDLE, BETA-ARM, DISHEVELLED-1, SEGMENT POLARITY PROTEIN KEYWDS 2 DISHEVELLED HOMOLOG DVL-1, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.C.WONG,J.ZHENG REVDAT 5 29-MAY-24 1FSH 1 REMARK REVDAT 4 23-FEB-22 1FSH 1 REMARK REVDAT 3 24-FEB-09 1FSH 1 VERSN REVDAT 2 31-DEC-02 1FSH 1 REMARK REVDAT 1 08-MAR-01 1FSH 0 JRNL AUTH H.C.WONG,J.MAO,J.T.NGUYEN,S.SRINIVAS,W.ZHANG,B.LIU,L.LI, JRNL AUTH 2 D.WU,J.ZHENG JRNL TITL STRUCTURAL BASIS OF THE RECOGNITION OF THE DISHEVELLED DEP JRNL TITL 2 DOMAIN IN THE WNT SIGNALING PATHWAY. JRNL REF NAT.STRUCT.BIOL. V. 7 1178 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 11101902 JRNL DOI 10.1038/82047 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURAL CALCULATIONS ARE BASED REMARK 3 ON 2009 NOE DISTANCE RESTRAINTS, 54 HYDROGEN-BOND DISTANCE REMARK 3 RESTRAINTS, AND 40 DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 1FSH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000011863. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1.5MM DEP, 15N AND 13C REMARK 210 LABELED, 100MM PHOSPHATE BUFFER REMARK 210 (PH 6.8), 0.1MM NAN3, 3MM DTT; REMARK 210 0.8-1.5MM DEP, 15N LABELED, REMARK 210 100MM PHOSPHATE BUFFER (PH 6.8), REMARK 210 0.1MM NAN3, 3MM DTT; 0.8-1.5MM REMARK 210 DEP, VALINE SELECTIVE 15N REMARK 210 LABELED, 100MM PHOSPHATE BUFFER REMARK 210 (PH 6.8), 0.1MM NAN3, 3MM DTT; REMARK 210 0.8-1.5MM DEP, 15N LABELED, REMARK 210 100MM PHOSPHATE BUFFER (PH 6.8), REMARK 210 0.1MM NAN3, 3MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; HNHA; REMARK 210 3D_15N-SEPARATED_NOESY; 2D NOESY; REMARK 210 HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, XEASY 1.3.13, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 THR A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 GLN A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG22 VAL A 17 CE1 PHE A 67 0.73 REMARK 500 HG13 ILE A 24 HH TYR A 76 0.79 REMARK 500 HG22 VAL A 17 HE1 PHE A 67 0.88 REMARK 500 HG11 VAL A 27 HH2 TRP A 59 0.90 REMARK 500 HE1 MET A 28 HG13 VAL A 56 0.91 REMARK 500 HB1 ALA A 13 HG11 VAL A 64 0.98 REMARK 500 HB1 ALA A 13 HG13 VAL A 64 1.00 REMARK 500 HE2 MET A 21 HE1 TYR A 76 1.01 REMARK 500 HB1 ALA A 13 CG1 VAL A 64 1.04 REMARK 500 HG21 VAL A 17 HD1 PHE A 67 1.06 REMARK 500 HE1 MET A 28 CG1 VAL A 56 1.08 REMARK 500 HG21 VAL A 17 CD1 PHE A 67 1.13 REMARK 500 HE1 MET A 28 HG12 VAL A 56 1.16 REMARK 500 HB2 ALA A 13 HG12 VAL A 64 1.18 REMARK 500 HB3 MET A 21 HE2 PHE A 85 1.23 REMARK 500 HE2 GLU A 12 HG2 GLU A 65 1.24 REMARK 500 CB ALA A 13 HG13 VAL A 64 1.32 REMARK 500 OE2 GLU A 12 HG2 GLU A 65 1.34 REMARK 500 HG13 ILE A 24 OH TYR A 76 1.36 REMARK 500 CG1 VAL A 27 HH2 TRP A 59 1.40 REMARK 500 CG2 VAL A 17 CE1 PHE A 67 1.45 REMARK 500 CB ALA A 13 HG11 VAL A 64 1.53 REMARK 500 HB2 ALA A 13 CG1 VAL A 64 1.55 REMARK 500 CB ALA A 13 CG1 VAL A 64 1.57 REMARK 500 CG1 ILE A 24 HH TYR A 76 1.59 REMARK 500 O SER A 33 NE2 HIS A 63 1.65 REMARK 500 CG2 VAL A 17 CD1 PHE A 67 1.77 REMARK 500 OE2 GLU A 12 CG GLU A 65 1.91 REMARK 500 CE MET A 28 CG1 VAL A 56 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 13 171.56 -46.10 REMARK 500 1 THR A 16 -48.12 -141.78 REMARK 500 1 VAL A 17 -32.93 167.91 REMARK 500 1 ASP A 20 111.91 -39.39 REMARK 500 1 LEU A 30 135.65 -38.66 REMARK 500 1 GLU A 36 114.17 65.31 REMARK 500 1 ARG A 38 -34.98 178.90 REMARK 500 1 LYS A 44 17.31 83.36 REMARK 500 1 ALA A 48 48.70 -101.76 REMARK 500 1 ASN A 49 93.77 151.58 REMARK 500 1 VAL A 51 -55.36 174.40 REMARK 500 1 ILE A 52 171.94 57.01 REMARK 500 1 ASP A 58 -31.90 -37.71 REMARK 500 1 THR A 62 -72.86 -72.31 REMARK 500 1 VAL A 64 -157.31 -124.48 REMARK 500 1 ARG A 71 -71.16 -71.26 REMARK 500 1 VAL A 90 -168.13 -121.74 REMARK 500 1 LYS A 92 -68.63 -131.18 REMARK 500 1 ILE A 93 -70.35 -149.95 REMARK 500 1 THR A 94 93.66 40.35 REMARK 500 1 PHE A 95 163.40 -41.52 REMARK 500 1 SER A 96 -49.95 -160.72 REMARK 500 1 TYR A 100 121.96 -31.69 REMARK 500 1 PHE A 103 163.82 -39.71 REMARK 500 2 ALA A 13 -51.67 162.37 REMARK 500 2 THR A 16 -43.62 -153.41 REMARK 500 2 VAL A 17 -31.94 167.85 REMARK 500 2 ASP A 20 106.05 56.59 REMARK 500 2 GLU A 36 100.17 71.90 REMARK 500 2 ARG A 38 -36.12 178.98 REMARK 500 2 LYS A 44 17.59 80.99 REMARK 500 2 ALA A 48 47.83 -95.63 REMARK 500 2 ASN A 49 94.85 153.36 REMARK 500 2 VAL A 51 -55.60 174.66 REMARK 500 2 ILE A 52 173.23 54.57 REMARK 500 2 HIS A 63 -75.22 -101.06 REMARK 500 2 VAL A 64 -166.71 -117.26 REMARK 500 2 GLU A 69 -150.63 -159.62 REMARK 500 2 HIS A 88 -98.73 -118.46 REMARK 500 2 THR A 89 -36.05 -156.40 REMARK 500 2 LYS A 92 -111.24 -104.86 REMARK 500 2 ILE A 93 -72.10 -140.54 REMARK 500 2 THR A 94 110.99 55.42 REMARK 500 2 SER A 96 -53.23 -164.28 REMARK 500 2 GLU A 97 41.25 75.71 REMARK 500 2 GLN A 98 -45.19 -132.52 REMARK 500 2 CYS A 99 -144.12 -83.91 REMARK 500 2 PHE A 103 155.60 -35.41 REMARK 500 3 ALA A 13 166.84 -43.28 REMARK 500 3 THR A 16 -49.75 -150.57 REMARK 500 REMARK 500 THIS ENTRY HAS 491 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1FSH A 1 105 UNP P51141 DVL1_MOUSE 391 495 SEQRES 1 A 105 THR SER SER VAL PRO GLY ALA PRO GLN LEU GLU GLU ALA SEQRES 2 A 105 PRO LEU THR VAL LYS SER ASP MET SER ALA ILE VAL ARG SEQRES 3 A 105 VAL MET GLN LEU PRO ASP SER GLY LEU GLU ILE ARG ASP SEQRES 4 A 105 ARG MET TRP LEU LYS ILE THR ILE ALA ASN ALA VAL ILE SEQRES 5 A 105 GLY ALA ASP VAL VAL ASP TRP LEU TYR THR HIS VAL GLU SEQRES 6 A 105 GLY PHE LYS GLU ARG ARG GLU ALA ARG LYS TYR ALA SER SEQRES 7 A 105 SER MET LEU LYS HIS GLY PHE LEU ARG HIS THR VAL ASN SEQRES 8 A 105 LYS ILE THR PHE SER GLU GLN CYS TYR TYR VAL PHE GLY SEQRES 9 A 105 ASP HELIX 1 1 ASP A 20 LEU A 30 1 11 HELIX 2 2 VAL A 51 VAL A 64 1 14 HELIX 3 3 GLU A 69 HIS A 83 1 15 SHEET 1 A 2 ARG A 40 TRP A 42 0 SHEET 2 A 2 ILE A 45 ILE A 47 -1 N ILE A 45 O TRP A 42 SHEET 1 B 2 LEU A 86 ARG A 87 0 SHEET 2 B 2 VAL A 102 PHE A 103 -1 N VAL A 102 O ARG A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1