HEADER TRANSFERASE 02-JUN-98 1FT2 TITLE CO-CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A TITLE 2 FARNESYL DIPHOSPHATE SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN FARNESYLTRANSFERASE; COMPND 8 CHAIN: B; COMPND 9 EC: 2.5.1.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 COLLECTION: ATCC 63134 FOR ALPHA SUBUNIT, ATCC 63127 FOR BETA SOURCE 6 SUBUNIT; SOURCE 7 ORGAN: BRAIN; SOURCE 8 CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 GENE: CDNA; SOURCE 10 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 11 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 15 EXPRESSION_SYSTEM_VECTOR: PACUW51 (PHARMINGEN); SOURCE 16 EXPRESSION_SYSTEM_PLASMID: BACULOVIRUS; SOURCE 17 MOL_ID: 2; SOURCE 18 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 19 ORGANISM_COMMON: NORWAY RAT; SOURCE 20 ORGANISM_TAXID: 10116; SOURCE 21 COLLECTION: ATCC 63134 FOR ALPHA SUBUNIT, ATCC 63127 FOR BETA SOURCE 22 SUBUNIT; SOURCE 23 ORGAN: BRAIN; SOURCE 24 CELLULAR_LOCATION: CYTOPLASM; SOURCE 25 GENE: CDNA; SOURCE 26 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 27 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 29 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 31 EXPRESSION_SYSTEM_VECTOR: PACUW51 (PHARMINGEN); SOURCE 32 EXPRESSION_SYSTEM_PLASMID: BACULOVIRUS KEYWDS PROTEIN FARNESYLTRANSFERASE, FARNESYL DIPHOSPHATE, CANCER KEYWDS 2 THERAPEUTICS, PRENYLTRANSFERASE, ISOPRENOID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.S.BEESE,P.J.CASEY,S.B.LONG REVDAT 5 22-MAY-24 1FT2 1 REMARK REVDAT 4 09-AUG-23 1FT2 1 REMARK LINK REVDAT 3 24-FEB-09 1FT2 1 VERSN REVDAT 2 18-NOV-98 1FT2 3 COMPND REMARK HETATM SOURCE REVDAT 2 2 3 JRNL KEYWDS REVDAT 1 04-NOV-98 1FT2 0 JRNL AUTH S.B.LONG,P.J.CASEY,L.S.BEESE JRNL TITL COCRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE COMPLEXED JRNL TITL 2 WITH A FARNESYL DIPHOSPHATE SUBSTRATE. JRNL REF BIOCHEMISTRY V. 37 9612 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9657673 JRNL DOI 10.1021/BI980708E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.W.PARK,S.R.BODULURI,J.F.MOOMAW,P.J.CASEY,L.S.BEESE REMARK 1 TITL CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE AT 2.25 REMARK 1 TITL 2 ANGSTROM RESOLUTION REMARK 1 REF SCIENCE V. 275 1800 1997 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.W.PARK,S.R.BODULURI,J.F.MOOMAW,P.J.CASEY,L.S.BEESE REMARK 1 TITL ERRATUM. CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE AT REMARK 1 TITL 2 2.25 ANGSTROM RESOLUTION REMARK 1 REF SCIENCE V. 276 21 1997 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH W.J.CHEN,J.F.MOOMAW,L.OVERTON,T.A.KOST,P.J.CASEY REMARK 1 TITL HIGH LEVEL EXPRESSION OF MAMMALIAN PROTEIN REMARK 1 TITL 2 FARNESYLTRANSFERASE IN A BACULOVIRUS SYSTEM. THE PURIFIED REMARK 1 TITL 3 PROTEIN CONTAINS ZINC REMARK 1 REF J.BIOL.CHEM. V. 268 9675 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.3 REMARK 3 NUMBER OF REFLECTIONS : 17125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SEE BELOW REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1460 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 78 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.360 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.140 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.620 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.850 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.490 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM.ZNK REMARK 3 PARAMETER FILE 3 : FPP_043198.XPRM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOP.ZNK REMARK 3 TOPOLOGY FILE 3 : FPP_043198.XPSF REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE REMARK 3 WITHOUT SUBSTRATE BOUND WAS DETERMINED TO 2.25 ANGSTROM REMARK 3 RESOLUTION (APO FTASE, PDB ID CODE: 1FT1). PHASES FOR THE REMARK 3 CO-CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE WITH REMARK 3 FARNESYL DIPHOSPHATE BOUND WERE DERIVED FROM THIS HIGH REMARK 3 RESOLUTION APO FTASE CRYSTAL STRUCTURE. REMARK 4 REMARK 4 1FT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 96 REMARK 200 PH : 7.0-7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MSC DOUBLE-MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17125 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.19900 REMARK 200 R SYM FOR SHELL (I) : 0.19900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 USING 1FT1 COORDINATES REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1FT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP, PROTEIN CONCENTRATION OF REMARK 280 16MG/ML IN 20 MM KCL, 10UM ZNCL, 10MM DTT, 20MM TRIS PH 7.7, REMARK 280 0.12% OCTYL-BETA-D-GLUCOPYRANOSIDE, AND 1MM FARNESYL DIPHOSPHATE; REMARK 280 RESERVOIR SOLUTION OF 15% PEG 8000, 200MM AMMONIUM ACETATE, PH REMARK 280 7.0, VAPOR DIFFUSION - HANGING DROP, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.88000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.94000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.41000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.47000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS PDB ENTRY CONTAINS THE COORDINATES OF A 3.4 ANGSTROM REMARK 400 RESOLUTION CO-CRYSTAL STRUCTURE OF PROTEIN REMARK 400 FARNESYLTRANSFERASE COMPLEXED WITH ITS NATURAL SUBSTRATE REMARK 400 FARNESYL DIPHOSPHATE. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 77 155.92 -47.61 REMARK 500 PRO A 86 156.10 -48.29 REMARK 500 VAL A 88 44.82 39.50 REMARK 500 ASP A 110 29.81 49.96 REMARK 500 GLU A 111 107.62 -54.74 REMARK 500 ASN A 127 87.12 -171.98 REMARK 500 ASN A 130 93.88 -65.51 REMARK 500 GLN A 162 65.79 -118.59 REMARK 500 LYS A 180 17.15 59.24 REMARK 500 GLU A 185 -76.91 -39.49 REMARK 500 ASN A 199 104.55 -59.62 REMARK 500 ASP A 230 91.03 -164.43 REMARK 500 THR A 247 -100.98 -124.14 REMARK 500 PRO A 271 -16.11 -43.40 REMARK 500 PRO A 304 -91.82 -64.15 REMARK 500 HIS A 306 29.85 -144.78 REMARK 500 SER A 308 167.25 175.43 REMARK 500 ASN A 329 39.70 75.60 REMARK 500 GLU A 347 -69.23 -133.69 REMARK 500 ASP A 349 47.21 -154.39 REMARK 500 HIS A 367 16.14 -147.22 REMARK 500 HIS B 66 123.83 -179.66 REMARK 500 LEU B 67 -19.10 -144.55 REMARK 500 GLN B 74 57.13 -61.51 REMARK 500 SER B 99 30.45 -149.94 REMARK 500 ALA B 151 -70.48 -48.26 REMARK 500 ALA B 155 -70.40 -53.54 REMARK 500 ASP B 200 168.78 179.36 REMARK 500 ASN B 215 70.35 54.53 REMARK 500 PHE B 284 -72.15 -72.68 REMARK 500 PHE B 302 -63.07 -92.76 REMARK 500 SER B 326 -16.74 -145.27 REMARK 500 MET B 329 36.86 -76.16 REMARK 500 HIS B 331 75.20 -69.36 REMARK 500 ASP B 352 -86.96 -69.52 REMARK 500 PRO B 354 -69.51 -8.63 REMARK 500 HIS B 383 107.74 -166.65 REMARK 500 VAL B 400 -65.57 -95.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 180 0.07 SIDE CHAIN REMARK 500 TYR B 365 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD2 REMARK 620 2 CYS B 299 SG 85.9 REMARK 620 3 HIS B 362 NE2 96.5 101.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP B 1 DBREF 1FT2 A 55 369 UNP Q04631 PFTA_RAT 55 369 DBREF 1FT2 B 22 422 UNP Q02293 PFTB_RAT 22 422 SEQRES 1 A 315 PHE LEU SER LEU ASP SER PRO THR TYR VAL LEU TYR ARG SEQRES 2 A 315 ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL PRO GLN SEQRES 3 A 315 ASN ASP GLY PRO SER PRO VAL VAL GLN ILE ILE TYR SER SEQRES 4 A 315 GLU LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG ALA VAL SEQRES 5 A 315 LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE LYS LEU SEQRES 6 A 315 THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN TYR THR SEQRES 7 A 315 VAL TRP HIS PHE ARG ARG VAL LEU LEU ARG SER LEU GLN SEQRES 8 A 315 LYS ASP LEU GLN GLU GLU MET ASN TYR ILE ILE ALA ILE SEQRES 9 A 315 ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP HIS HIS SEQRES 10 A 315 ARG ARG VAL LEU VAL GLU TRP LEU LYS ASP PRO SER GLN SEQRES 11 A 315 GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN ASP ALA SEQRES 12 A 315 LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP VAL ILE SEQRES 13 A 315 GLN GLU PHE ARG LEU TRP ASP ASN GLU LEU GLN TYR VAL SEQRES 14 A 315 ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN SER VAL SEQRES 15 A 315 TRP ASN GLN ARG HIS PHE VAL ILE SER ASN THR THR GLY SEQRES 16 A 315 TYR SER ASP ARG ALA VAL LEU GLU ARG GLU VAL GLN TYR SEQRES 17 A 315 THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN GLU SER SEQRES 18 A 315 ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP ARG GLY SEQRES 19 A 315 LEU SER ARG TYR PRO ASN LEU LEU ASN GLN LEU LEU ASP SEQRES 20 A 315 LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE ALA PHE SEQRES 21 A 315 LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN GLN CYS SEQRES 22 A 315 ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU GLU LEU SEQRES 23 A 315 CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE ARG LYS SEQRES 24 A 315 GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN SER LYS SEQRES 25 A 315 HIS SER ARG SEQRES 1 B 401 PRO LEU TYR SER LEU ARG PRO GLU HIS ALA ARG GLU ARG SEQRES 2 B 401 LEU GLN ASP ASP SER VAL GLU THR VAL THR SER ILE GLU SEQRES 3 B 401 GLN ALA LYS VAL GLU GLU LYS ILE GLN GLU VAL PHE SER SEQRES 4 B 401 SER TYR LYS PHE ASN HIS LEU VAL PRO ARG LEU VAL LEU SEQRES 5 B 401 GLN ARG GLU LYS HIS PHE HIS TYR LEU LYS ARG GLY LEU SEQRES 6 B 401 ARG GLN LEU THR ASP ALA TYR GLU CYS LEU ASP ALA SER SEQRES 7 B 401 ARG PRO TRP LEU CYS TYR TRP ILE LEU HIS SER LEU GLU SEQRES 8 B 401 LEU LEU ASP GLU PRO ILE PRO GLN ILE VAL ALA THR ASP SEQRES 9 B 401 VAL CYS GLN PHE LEU GLU LEU CYS GLN SER PRO ASP GLY SEQRES 10 B 401 GLY PHE GLY GLY GLY PRO GLY GLN TYR PRO HIS LEU ALA SEQRES 11 B 401 PRO THR TYR ALA ALA VAL ASN ALA LEU CYS ILE ILE GLY SEQRES 12 B 401 THR GLU GLU ALA TYR ASN VAL ILE ASN ARG GLU LYS LEU SEQRES 13 B 401 LEU GLN TYR LEU TYR SER LEU LYS GLN PRO ASP GLY SER SEQRES 14 B 401 PHE LEU MET HIS VAL GLY GLY GLU VAL ASP VAL ARG SER SEQRES 15 B 401 ALA TYR CYS ALA ALA SER VAL ALA SER LEU THR ASN ILE SEQRES 16 B 401 ILE THR PRO ASP LEU PHE GLU GLY THR ALA GLU TRP ILE SEQRES 17 B 401 ALA ARG CYS GLN ASN TRP GLU GLY GLY ILE GLY GLY VAL SEQRES 18 B 401 PRO GLY MET GLU ALA HIS GLY GLY TYR THR PHE CYS GLY SEQRES 19 B 401 LEU ALA ALA LEU VAL ILE LEU LYS LYS GLU ARG SER LEU SEQRES 20 B 401 ASN LEU LYS SER LEU LEU GLN TRP VAL THR SER ARG GLN SEQRES 21 B 401 MET ARG PHE GLU GLY GLY PHE GLN GLY ARG CYS ASN LYS SEQRES 22 B 401 LEU VAL ASP GLY CYS TYR SER PHE TRP GLN ALA GLY LEU SEQRES 23 B 401 LEU PRO LEU LEU HIS ARG ALA LEU HIS ALA GLN GLY ASP SEQRES 24 B 401 PRO ALA LEU SER MET SER HIS TRP MET PHE HIS GLN GLN SEQRES 25 B 401 ALA LEU GLN GLU TYR ILE LEU MET CYS CYS GLN CYS PRO SEQRES 26 B 401 ALA GLY GLY LEU LEU ASP LYS PRO GLY LYS SER ARG ASP SEQRES 27 B 401 PHE TYR HIS THR CYS TYR CYS LEU SER GLY LEU SER ILE SEQRES 28 B 401 ALA GLN HIS PHE GLY SER GLY ALA MET LEU HIS ASP VAL SEQRES 29 B 401 VAL MET GLY VAL PRO GLU ASN VAL LEU GLN PRO THR HIS SEQRES 30 B 401 PRO VAL TYR ASN ILE GLY PRO ASP LYS VAL ILE GLN ALA SEQRES 31 B 401 THR THR HIS PHE LEU GLN LYS PRO VAL PRO GLY HET ZN B1001 1 HET FPP B 1 24 HETNAM ZN ZINC ION HETNAM FPP FARNESYL DIPHOSPHATE FORMUL 3 ZN ZN 2+ FORMUL 4 FPP C15 H28 O7 P2 HELIX 1 1 TYR A 66 ASP A 68 5 3 HELIX 2 2 ALA A 70 TRP A 72 5 3 HELIX 3 3 GLU A 94 GLN A 108 1 15 HELIX 4 4 GLU A 114 LEU A 126 1 13 HELIX 5 5 TYR A 131 SER A 143 1 13 HELIX 6 6 LEU A 148 GLU A 161 1 14 HELIX 7 7 TYR A 166 LEU A 179 1 14 HELIX 8 8 GLU A 185 GLN A 195 1 11 HELIX 9 9 TYR A 200 GLU A 212 1 13 HELIX 10 10 GLU A 219 GLU A 229 1 11 HELIX 11 11 ASN A 234 ASN A 246 1 13 HELIX 12 12 ARG A 253 LEU A 269 1 17 HELIX 13 13 GLU A 274 ARG A 287 1 14 HELIX 14 14 LEU A 289 ARG A 291 5 3 HELIX 15 15 PRO A 293 LEU A 300 1 8 HELIX 16 16 PRO A 309 GLU A 324 1 16 HELIX 17 17 LYS A 330 LYS A 346 1 17 HELIX 18 18 THR A 350 HIS A 367 5 18 HELIX 19 19 PRO B 28 GLU B 33 5 6 HELIX 20 20 VAL B 43 PHE B 64 1 22 HELIX 21 21 ARG B 75 GLY B 85 1 11 HELIX 22 22 ASP B 91 LEU B 96 5 6 HELIX 23 23 ARG B 100 LEU B 113 1 14 HELIX 24 24 GLN B 120 CYS B 133 1 14 HELIX 25 25 LEU B 150 ILE B 163 1 14 HELIX 26 26 GLU B 166 VAL B 171 1 6 HELIX 27 27 ARG B 174 LEU B 184 1 11 HELIX 28 28 VAL B 201 THR B 214 1 14 HELIX 29 29 THR B 225 CYS B 232 1 8 HELIX 30 30 GLY B 249 ILE B 261 1 13 HELIX 31 31 GLU B 265 SER B 267 5 3 HELIX 32 32 LEU B 270 ARG B 280 1 11 HELIX 33 33 GLY B 298 TRP B 303 5 6 HELIX 34 34 ALA B 305 ALA B 317 1 13 HELIX 35 35 GLN B 332 CYS B 342 1 11 HELIX 36 36 PHE B 360 GLN B 374 1 15 HELIX 37 37 PRO B 390 ASN B 392 5 3 HELIX 38 38 PRO B 405 GLN B 417 1 13 SHEET 1 A 2 HIS B 375 SER B 378 0 SHEET 2 A 2 MET B 381 ASP B 384 -1 N HIS B 383 O PHE B 376 LINK OD2 ASP B 297 ZN ZN B1001 1555 1555 2.38 LINK SG CYS B 299 ZN ZN B1001 1555 1555 2.42 LINK NE2 HIS B 362 ZN ZN B1001 1555 1555 2.64 SITE 1 AC1 4 ASP B 297 CYS B 299 TYR B 361 HIS B 362 SITE 1 AC2 7 LYS A 164 HIS B 248 GLY B 250 CYS B 254 SITE 2 AC2 7 ARG B 291 LYS B 294 TYR B 300 CRYST1 166.660 166.660 98.820 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006000 0.003464 0.000000 0.00000 SCALE2 0.000000 0.006928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010119 0.00000