HEADER SIGNALING PROTEIN 11-SEP-00 1FT4 TITLE PHOTOCHEMICALLY-ENHANCED BINDING OF SMALL MOLECULES TO THE TUMOR TITLE 2 NECROSIS FACTOR RECEPTOR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE TUMOR NECROSIS FACTOR RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: 55 KD EXTRACELLULAR DOMAIN (MET PLUS RESIDUES 12-272); COMPND 5 SYNONYM: TUMOR NECROSIS FACTOR, BINDING PROTEIN 1, TBPI, P60, TNF-R1, COMPND 6 TNF-RI, P55; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N OF ALA 62, CHAIN A IS BOUND TO LIGAND 705 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINDING PROTEIN, CYTOKINE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.K.MUCKELBAUER,C.-H.CHANG REVDAT 4 04-OCT-17 1FT4 1 REMARK REVDAT 3 24-FEB-09 1FT4 1 VERSN REVDAT 2 30-SEP-03 1FT4 1 JRNL DBREF REVDAT 1 12-OCT-01 1FT4 0 JRNL AUTH P.H.CARTER,P.A.SCHERLE,J.K.MUCKELBAUER,M.E.VOSS,R.Q.LIU, JRNL AUTH 2 L.A.THOMPSON,A.J.TEBBEN,K.A.SOLOMON,Y.C.LO,Z.LI, JRNL AUTH 3 P.STRZEMIENSKI,G.YANG,N.FALAHATPISHEH,M.XU,Z.WU,N.A.FARROW, JRNL AUTH 4 K.RAMNARAYAN,J.WANG,D.RIDEOUT,V.YALAMOORI,P.DOMAILLE, JRNL AUTH 5 D.J.UNDERWOOD,J.M.TRZASKOS,S.M.FRIEDMAN,R.C.NEWTON, JRNL AUTH 6 C.P.DECICCO,J.A.MUCKELBAUER JRNL TITL PHOTOCHEMICALLY ENHANCED BINDING OF SMALL MOLECULES TO THE JRNL TITL 2 TUMOR NECROSIS FACTOR RECEPTOR-1 INHIBITS THE BINDING OF JRNL TITL 3 TNF-ALPHA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 11879 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11592999 JRNL DOI 10.1073/PNAS.211178398 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.H.NAISMITH,T.Q.DEVINE,B.J.BRANDHUBER,S.R.SPRANG REMARK 1 TITL CRYSTALLOGRAPHIC EVIDENCE FOR DIMERIZATION OF UNLIGANDED REMARK 1 TITL 2 TUMOR NECROSIS FACTOR RECEPTOR REMARK 1 REF J.BIOL.CHEM. V. 270 13303 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.270.22.13303 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.W.BANNER,A.D'ARCY,W.JANES,W.GENTZ,H.-J.SCHOENFELD, REMARK 1 AUTH 2 C.BROGER,H.LOETSCHER,W.LESSLAUER REMARK 1 TITL CRYSTAL STRUCTURE OF THE SOLUBLE HUMAN 55 KD TNF REMARK 1 TITL 2 RECEPTOR-HUMAN TNFB COMPLEX: IMPLICATION FOR TNF RECEPTOR REMARK 1 TITL 3 ACTIVATION REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 73 431 1993 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/0092-8674(93)90132-A REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, AMMONIUM ACETATE TRIS BUFFER, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP AT 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.90000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.50000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.90000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.50000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.90000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.90000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.50000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.90000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.90000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 142.50000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 151 REMARK 465 SER A 152 REMARK 465 CYS A 153 REMARK 465 SER A 154 REMARK 465 ASN A 155 REMARK 465 CYS A 156 REMARK 465 LYS A 157 REMARK 465 LYS A 158 REMARK 465 SER A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 CYS A 162 REMARK 465 THR A 163 REMARK 465 LYS A 164 REMARK 465 LEU A 165 REMARK 465 CYS A 166 REMARK 465 LEU A 167 REMARK 465 PRO A 168 REMARK 465 GLN A 169 REMARK 465 ILE A 170 REMARK 465 GLU A 171 REMARK 465 ASN A 172 REMARK 465 MET B 11 REMARK 465 ASP B 12 REMARK 465 SER B 13 REMARK 465 CYS B 156 REMARK 465 LYS B 157 REMARK 465 LYS B 158 REMARK 465 SER B 159 REMARK 465 LEU B 160 REMARK 465 GLU B 161 REMARK 465 CYS B 162 REMARK 465 THR B 163 REMARK 465 LYS B 164 REMARK 465 LEU B 165 REMARK 465 CYS B 166 REMARK 465 LEU B 167 REMARK 465 PRO B 168 REMARK 465 GLN B 169 REMARK 465 ILE B 170 REMARK 465 GLU B 171 REMARK 465 ASN B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 22 CG HIS A 22 CD2 0.055 REMARK 500 THR A 61 C ALA A 62 N 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 20 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 38 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PHE A 112 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PHE A 115 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASN A 116 C - N - CA ANGL. DEV. = -16.9 DEGREES REMARK 500 TYR B 40 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 CYS B 98 C - N - CA ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 103.04 68.20 REMARK 500 SER A 13 -165.52 -171.53 REMARK 500 VAL A 14 -109.26 -137.40 REMARK 500 CYS A 15 165.11 -49.28 REMARK 500 GLN A 17 108.47 -55.28 REMARK 500 GLN A 24 -81.54 -106.21 REMARK 500 ASN A 26 23.77 -73.03 REMARK 500 SER A 27 38.86 -145.09 REMARK 500 LEU A 39 95.94 -59.02 REMARK 500 PRO A 46 44.00 -57.68 REMARK 500 ALA A 62 -86.91 -34.54 REMARK 500 SER A 63 -139.72 -167.61 REMARK 500 GLU A 64 93.68 -39.16 REMARK 500 HIS A 66 74.67 -102.22 REMARK 500 CYS A 73 -177.62 -45.99 REMARK 500 GLU A 79 11.27 -63.12 REMARK 500 MET A 80 24.81 -158.88 REMARK 500 VAL A 90 -46.68 24.92 REMARK 500 CYS A 96 -168.37 -118.08 REMARK 500 TYR A 106 82.63 -60.63 REMARK 500 SER A 108 48.72 78.54 REMARK 500 GLU A 109 2.09 59.78 REMARK 500 ASN A 110 -42.44 -163.24 REMARK 500 CYS A 120 105.57 -51.51 REMARK 500 ASN A 122 -5.35 73.67 REMARK 500 HIS A 126 -78.67 -95.43 REMARK 500 SER A 128 155.31 -49.26 REMARK 500 GLU A 131 -50.50 -22.54 REMARK 500 HIS A 140 48.44 -82.84 REMARK 500 ALA A 141 75.67 171.95 REMARK 500 PHE A 143 -152.79 -86.37 REMARK 500 PHE A 144 66.57 -151.51 REMARK 500 LEU A 145 74.52 25.90 REMARK 500 GLU A 147 -76.58 63.57 REMARK 500 ASN A 148 69.16 -162.52 REMARK 500 GLU A 149 -108.67 -152.44 REMARK 500 PRO B 16 -165.67 -64.47 REMARK 500 ASN B 26 44.91 -60.74 REMARK 500 SER B 27 7.73 -153.16 REMARK 500 CYS B 33 -171.49 -57.12 REMARK 500 HIS B 66 49.68 -147.36 REMARK 500 GLU B 79 -18.20 -49.24 REMARK 500 THR B 89 90.75 -163.53 REMARK 500 VAL B 90 -46.48 45.28 REMARK 500 ARG B 99 155.64 -48.27 REMARK 500 LYS B 100 80.25 -21.33 REMARK 500 TYR B 106 98.78 -68.93 REMARK 500 ASN B 122 74.14 46.61 REMARK 500 VAL B 125 120.66 -38.83 REMARK 500 HIS B 126 -87.03 -100.19 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 11 ASP A 12 -114.57 REMARK 500 ALA A 62 SER A 63 -145.10 REMARK 500 LEU A 119 CYS A 120 -145.73 REMARK 500 GLY A 142 PHE A 143 149.77 REMARK 500 PHE B 60 THR B 61 146.42 REMARK 500 ILE B 85 SER B 86 149.70 REMARK 500 TRP B 107 SER B 108 -34.10 REMARK 500 SER B 154 ASN B 155 117.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 20 0.14 SIDE CHAIN REMARK 500 TYR A 106 0.18 SIDE CHAIN REMARK 500 TYR B 38 0.09 SIDE CHAIN REMARK 500 TYR B 40 0.14 SIDE CHAIN REMARK 500 ARG B 99 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 703 A 962 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NCF RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED WITH PHOTOREACTIVE COMPOUND DBREF 1FT4 A 12 172 UNP P19438 TNR1A_HUMAN 41 201 DBREF 1FT4 B 12 172 UNP P19438 TNR1A_HUMAN 41 201 SEQADV 1FT4 MET A 11 UNP P19438 CLONING ARTIFACT SEQADV 1FT4 MET B 11 UNP P19438 CLONING ARTIFACT SEQRES 1 A 162 MET ASP SER VAL CYS PRO GLN GLY LYS TYR ILE HIS PRO SEQRES 2 A 162 GLN ASN ASN SER ILE CYS CYS THR LYS CYS HIS LYS GLY SEQRES 3 A 162 THR TYR LEU TYR ASN ASP CYS PRO GLY PRO GLY GLN ASP SEQRES 4 A 162 THR ASP CYS ARG GLU CYS GLU SER GLY SER PHE THR ALA SEQRES 5 A 162 SER GLU ASN HIS LEU ARG HIS CYS LEU SER CYS SER LYS SEQRES 6 A 162 CYS ARG LYS GLU MET GLY GLN VAL GLU ILE SER SER CYS SEQRES 7 A 162 THR VAL ASP ARG ASP THR VAL CYS GLY CYS ARG LYS ASN SEQRES 8 A 162 GLN TYR ARG HIS TYR TRP SER GLU ASN LEU PHE GLN CYS SEQRES 9 A 162 PHE ASN CYS SER LEU CYS LEU ASN GLY THR VAL HIS LEU SEQRES 10 A 162 SER CYS GLN GLU LYS GLN ASN THR VAL CYS THR CYS HIS SEQRES 11 A 162 ALA GLY PHE PHE LEU ARG GLU ASN GLU CYS VAL SER CYS SEQRES 12 A 162 SER ASN CYS LYS LYS SER LEU GLU CYS THR LYS LEU CYS SEQRES 13 A 162 LEU PRO GLN ILE GLU ASN SEQRES 1 B 162 MET ASP SER VAL CYS PRO GLN GLY LYS TYR ILE HIS PRO SEQRES 2 B 162 GLN ASN ASN SER ILE CYS CYS THR LYS CYS HIS LYS GLY SEQRES 3 B 162 THR TYR LEU TYR ASN ASP CYS PRO GLY PRO GLY GLN ASP SEQRES 4 B 162 THR ASP CYS ARG GLU CYS GLU SER GLY SER PHE THR ALA SEQRES 5 B 162 SER GLU ASN HIS LEU ARG HIS CYS LEU SER CYS SER LYS SEQRES 6 B 162 CYS ARG LYS GLU MET GLY GLN VAL GLU ILE SER SER CYS SEQRES 7 B 162 THR VAL ASP ARG ASP THR VAL CYS GLY CYS ARG LYS ASN SEQRES 8 B 162 GLN TYR ARG HIS TYR TRP SER GLU ASN LEU PHE GLN CYS SEQRES 9 B 162 PHE ASN CYS SER LEU CYS LEU ASN GLY THR VAL HIS LEU SEQRES 10 B 162 SER CYS GLN GLU LYS GLN ASN THR VAL CYS THR CYS HIS SEQRES 11 B 162 ALA GLY PHE PHE LEU ARG GLU ASN GLU CYS VAL SER CYS SEQRES 12 B 162 SER ASN CYS LYS LYS SER LEU GLU CYS THR LYS LEU CYS SEQRES 13 B 162 LEU PRO GLN ILE GLU ASN HET 703 A 962 31 HETNAM 703 5-(3-MORPHOLIN-4-YL-PROPYL)-2-(3-NITRO-PHENYL)-4- HETNAM 2 703 THIOXO-4,5-DIHYDRO-1-THIA-3B,5-DIAZA- HETNAM 3 703 CYCLOPENTA[A]PENTALEN-6-ONE HETSYN 703 6-[3-(4-MORPHOLINYL)PROPYL]-2-(3-NITROPHENYL)-5-THIOXO- HETSYN 2 703 5,6,-DIHYDRO-7H-THIENOL[2',3':4,5]PYRROLO[1,2-C] HETSYN 3 703 IMIDAZOL-7-ONE FORMUL 3 703 C21 H20 N4 O4 S2 HELIX 1 1 ARG A 77 MET A 80 5 4 HELIX 2 2 ARG B 77 GLY B 81 5 5 HELIX 3 3 CYS B 98 GLN B 102 5 5 HELIX 4 4 ALA B 141 PHE B 143 5 3 SHEET 1 A 2 LYS A 19 ILE A 21 0 SHEET 2 A 2 CYS A 29 THR A 31 -1 O CYS A 30 N TYR A 20 SHEET 1 B 2 THR A 37 ASN A 41 0 SHEET 2 B 2 ASP A 51 GLU A 54 -1 O ASP A 51 N TYR A 40 SHEET 1 C 2 SER A 59 PHE A 60 0 SHEET 2 C 2 LEU A 71 SER A 72 -1 O LEU A 71 N PHE A 60 SHEET 1 D 2 GLN A 82 SER A 86 0 SHEET 2 D 2 VAL A 95 CYS A 98 -1 O VAL A 95 N SER A 86 SHEET 1 E 2 GLN A 102 HIS A 105 0 SHEET 2 E 2 GLN A 113 ASN A 116 -1 O GLN A 113 N HIS A 105 SHEET 1 F 2 GLY A 123 LEU A 127 0 SHEET 2 F 2 VAL A 136 CYS A 139 -1 O VAL A 136 N HIS A 126 SHEET 1 G 2 LYS B 19 ILE B 21 0 SHEET 2 G 2 CYS B 29 THR B 31 -1 O CYS B 30 N TYR B 20 SHEET 1 H 2 THR B 37 LEU B 39 0 SHEET 2 H 2 CYS B 52 GLU B 54 -1 O ARG B 53 N TYR B 38 SHEET 1 I 2 SER B 59 PHE B 60 0 SHEET 2 I 2 LEU B 71 SER B 72 -1 N LEU B 71 O PHE B 60 SHEET 1 J 2 VAL B 83 SER B 86 0 SHEET 2 J 2 VAL B 95 GLY B 97 -1 O VAL B 95 N ILE B 85 SHEET 1 K 2 TYR B 103 HIS B 105 0 SHEET 2 K 2 GLN B 113 PHE B 115 -1 O GLN B 113 N HIS B 105 SHEET 1 L 2 GLY B 123 VAL B 125 0 SHEET 2 L 2 CYS B 137 CYS B 139 -1 N THR B 138 O THR B 124 SHEET 1 M 2 PHE B 144 ARG B 146 0 SHEET 2 M 2 GLU B 149 VAL B 151 -1 N GLU B 149 O ARG B 146 SSBOND 1 CYS A 15 CYS A 29 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 43 1555 1555 2.03 SSBOND 3 CYS A 33 CYS A 52 1555 1555 2.03 SSBOND 4 CYS A 55 CYS A 70 1555 1555 2.03 SSBOND 5 CYS A 73 CYS A 88 1555 1555 2.03 SSBOND 6 CYS A 76 CYS A 96 1555 1555 2.03 SSBOND 7 CYS A 98 CYS A 114 1555 1555 2.03 SSBOND 8 CYS A 117 CYS A 129 1555 1555 2.03 SSBOND 9 CYS A 120 CYS A 137 1555 1555 2.03 SSBOND 10 CYS A 139 CYS A 150 1555 1555 2.03 SSBOND 11 CYS B 15 CYS B 29 1555 1555 2.03 SSBOND 12 CYS B 30 CYS B 43 1555 1555 2.03 SSBOND 13 CYS B 33 CYS B 52 1555 1555 2.03 SSBOND 14 CYS B 55 CYS B 70 1555 1555 2.03 SSBOND 15 CYS B 73 CYS B 88 1555 1555 2.03 SSBOND 16 CYS B 76 CYS B 96 1555 1555 2.03 SSBOND 17 CYS B 98 CYS B 114 1555 1555 2.03 SSBOND 18 CYS B 117 CYS B 129 1555 1555 2.03 SSBOND 19 CYS B 120 CYS B 137 1555 1555 2.03 SSBOND 20 CYS B 139 CYS B 150 1555 1555 2.03 LINK C1 703 A 962 N ALA A 62 1555 1555 1.50 CISPEP 1 LYS A 100 ASN A 101 0 -17.07 CISPEP 2 SER B 57 GLY B 58 0 1.68 CISPEP 3 GLU B 109 ASN B 110 0 13.54 SITE 1 AC1 5 THR A 61 ALA A 62 LEU A 67 LEU A 71 SITE 2 AC1 5 LEU B 71 CRYST1 67.800 67.800 190.000 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014749 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005263 0.00000