data_1FVM
#
_entry.id 1FVM
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.381
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1FVM pdb_00001fvm 10.2210/pdb1fvm/pdb
RCSB RCSB011937 ? ?
WWPDB D_1000011937 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1AA5 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN'
PDB 1C0Q unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH 2-ACETOXY-D-PROPANOIC ACID'
PDB 1C0R unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN WITH D-LACTIC ACID'
PDB 1GAC unspecified 'SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT'
PDB 1GHG unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON'
PDB 1PN3 unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN'
PDB 1PNV unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN'
PDB 1QD8 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN'
PDB 1RRV unspecified 'CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN.'
PDB 1SHO unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1FVM
_pdbx_database_status.recvd_initial_deposition_date 2000-09-20
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Nitanai, Y.' 1
'Kakoi, K.' 2
'Aoki, K.' 3
#
_citation.id primary
_citation.title 'Crystal Structures of the Complexes between Vancomycin and Cell-Wall Precursor Analogs.'
_citation.journal_abbrev J.Mol.Biol.
_citation.journal_volume 385
_citation.page_first 1422
_citation.page_last ?
_citation.year 2009
_citation.journal_id_ASTM JMOBAK
_citation.country UK
_citation.journal_id_ISSN 0022-2836
_citation.journal_id_CSD 0070
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 18976660
_citation.pdbx_database_id_DOI 10.1016/J.JMB.2008.10.026
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Nitanai, Y.' 1 ?
primary 'Kikuchi, T.' 2 ?
primary 'Kakoi, K.' 3 ?
primary 'Hanamaki, S.' 4 ?
primary 'Fujisawa, I.' 5 ?
primary 'Aoki, K.' 6 ?
#
_cell.entry_id 1FVM
_cell.length_a 35.637
_cell.length_b 36.425
_cell.length_c 65.728
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 24
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1FVM
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn VANCOMYCIN 1149.977 6 ? ? ? ?
2 polymer syn DI-ACETYL-LYS-D-ALA-D-ALA 372.417 6 ? ? ? ?
3 branched man 'vancosamine-(1-2)-beta-D-glucopyranose' 323.340 6 ? ? ? ?
4 water nat water 18.015 112 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no yes '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)' XXNGGYX A,B,C,D,E,F ?
2 'polypeptide(L)' no yes '(DLS)(DAL)(DAL)' KAA G,H,I,J,K,L ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MLU n
1 2 OMZ n
1 3 ASN n
1 4 GHP n
1 5 GHP n
1 6 OMY n
1 7 3FG n
2 1 DLS n
2 2 DAL n
2 3 DAL n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'AMYCOLATOPSIS ORIENTALIS'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 31958
_pdbx_entity_src_syn.details 'SEQUENCE OCCURS IN NOCARDIA ORIENTALIS'
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
1 NOR NOR00681 1 ? ? NOR00681 ?
2 PDB 1FVM 2 ? ? 1FVM ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1FVM A 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
2 1 1FVM B 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
3 1 1FVM C 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
4 1 1FVM D 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
5 1 1FVM E 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
6 1 1FVM F 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
7 2 1FVM G 1 ? 3 ? 1FVM 1 ? 3 ? 1 3
8 2 1FVM H 1 ? 3 ? 1FVM 1 ? 3 ? 1 3
9 2 1FVM I 1 ? 3 ? 1FVM 1 ? 3 ? 1 3
10 2 1FVM J 1 ? 3 ? 1FVM 1 ? 3 ? 1 3
11 2 1FVM K 1 ? 3 ? 1FVM 1 ? 3 ? 1 3
12 2 1FVM L 1 ? 3 ? 1FVM 1 ? 3 ? 1 3
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose'
'C6 H12 O6' 180.156
DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093
DLS 'L-peptide linking' n DI-ACETYL-LYSINE ? 'C10 H18 N2 O4' 230.261
GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162
HOH non-polymer . WATER ? 'H2 O' 18.015
MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199
OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633
OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633
RER 'L-saccharide, alpha linking' . vancosamine
'(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose' 'C7 H15 N O3' 161.199
#
_exptl.entry_id 1FVM
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.95
_exptl_crystal.density_percent_sol 37.10
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 8.5
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
;CRYSTALS WERE PREPARED AT 293K FROM A SOLUTION CONTAINING 6.6 MM VANCOMYCIN, 6.6 MM DI- ACETYL-LYS -D-ALA-D-ALA, 3.3 % (V/V) ETHANOL, AND 0.66 M TRIS BUFFER PH 8.5, BY EQUILIBRATING THE SOLUTION AGAINST A RESERVOIR SOLUTION CONTAINING 10 % (V/V) ETHANOL AND 0.2 M TRIS BUFFER PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K
;
#
_diffrn.id 1
_diffrn.ambient_temp 120
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUAMTUM 4R'
_diffrn_detector.pdbx_collection_date 2000-06-24
_diffrn_detector.details MIRRORS
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'FOCUSSING SILICON CRYSTAL'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A'
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
_diffrn_source.pdbx_synchrotron_beamline BL-6A
_diffrn_source.pdbx_wavelength 1.0000
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 1FVM
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 25.500
_reflns.d_resolution_high 1.800
_reflns.number_obs 8400
_reflns.number_all ?
_reflns.percent_possible_obs 100.0
_reflns.pdbx_Rmerge_I_obs 0.04600
_reflns.pdbx_Rsym_value 0.04300
_reflns.pdbx_netI_over_sigmaI 11.7000
_reflns.B_iso_Wilson_estimate 6.80
_reflns.pdbx_redundancy 6.800
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.90
_reflns_shell.percent_possible_all 99.9
_reflns_shell.Rmerge_I_obs 0.07200
_reflns_shell.pdbx_Rsym_value 0.06600
_reflns_shell.meanI_over_sigI_obs 8.500
_reflns_shell.pdbx_redundancy 6.30
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 1FVM
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 7864
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 4.000
_refine.pdbx_data_cutoff_high_absF 1000000.000
_refine.pdbx_data_cutoff_low_absF 0.0010
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 5.00
_refine.ls_d_res_high 1.80
_refine.ls_percent_reflns_obs 99.0
_refine.ls_R_factor_obs 0.144
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.144
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 8.50
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model 'PDB ENTRY 1AA5'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model RESTRAINED
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.entry_id 1FVM
_refine_analyze.Luzzati_coordinate_error_obs 0.13
_refine_analyze.Luzzati_sigma_a_obs 0.07
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 636
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 126
_refine_hist.number_atoms_solvent 112
_refine_hist.number_atoms_total 874
_refine_hist.d_res_high 1.80
_refine_hist.d_res_low 5.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 1.05 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d 1.34 ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? 1.500 ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? 2.000 ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it 1.350 2.000 ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it 1.970 2.500 ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.80
_refine_ls_shell.d_res_low 1.83
_refine_ls_shell.number_reflns_R_work 382
_refine_ls_shell.R_factor_R_work 0.1480
_refine_ls_shell.percent_reflns_obs 95.70
_refine_ls_shell.R_factor_R_free ?
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_xplor_file.serial_no 1
_pdbx_xplor_file.param_file PARAM19X.SOL
_pdbx_xplor_file.topol_file TOPH19.SOL
#
_struct.entry_id 1FVM
_struct.title 'Complex of vancomycin with DI-acetyl-LYS-D-ALA-D-ALA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1FVM
_struct_keywords.pdbx_keywords PEPTIDE/ANTIBIOTIC
_struct_keywords.text
'PEPTIDE-ANTIBIOTIC COMPLEX, GLYCOPEPTIDE, ANTIBIOTIC, VANCOMYCIN, CELL WALL PRECURSOR, STRUCTURAL PROTEIN-ANTIBIOTIC COMPLEX'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 1 ?
D N N 1 ?
E N N 1 ?
F N N 1 ?
G N N 2 ?
H N N 2 ?
I N N 2 ?
J N N 2 ?
K N N 2 ?
L N N 2 ?
M N N 3 ?
N N N 3 ?
O N N 3 ?
P N N 3 ?
Q N N 3 ?
R N N 3 ?
S N N 4 ?
T N N 4 ?
U N N 4 ?
V N N 4 ?
W N N 4 ?
X N N 4 ?
Y N N 4 ?
Z N N 4 ?
AA N N 4 ?
BA N N 4 ?
CA N N 4 ?
DA N N 4 ?
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.349 ? ?
covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.357 ? ?
covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.411 ? ?
covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.343 ? ?
covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.399 ? ?
covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 M BGC . C1 ? ? A GHP 4 M BGC 1 1_555 ? ? ? ? ? ? ? 1.391 ? ?
covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.350 ? ?
covale9 covale one ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.501 ? ?
covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.338 ? ?
covale11 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.347 ? ?
covale12 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.351 ? ?
covale13 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.400 ? ?
covale14 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.314 ? ?
covale15 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.358 ? ?
covale16 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.398 ? ?
covale17 covale one ? B GHP 4 O4 ? ? ? 1_555 N BGC . C1 ? ? B GHP 4 N BGC 1 1_555 ? ? ? ? ? ? ? 1.410 ? ?
covale18 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.341 ? ?
covale19 covale one ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.513 ? ?
covale20 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale21 covale both ? C MLU 1 C ? ? ? 1_555 C OMZ 2 N ? ? C MLU 1 C OMZ 2 1_555 ? ? ? ? ? ? ? 1.358 ? ?
covale22 covale both ? C OMZ 2 C ? ? ? 1_555 C ASN 3 N ? ? C OMZ 2 C ASN 3 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale23 covale none ? C OMZ 2 OH ? ? ? 1_555 C GHP 4 C5 ? ? C OMZ 2 C GHP 4 1_555 ? ? ? ? ? ? ? 1.413 ? ?
covale24 covale both ? C ASN 3 C ? ? ? 1_555 C GHP 4 N ? ? C ASN 3 C GHP 4 1_555 ? ? ? ? ? ? ? 1.320 ? ?
covale25 covale both ? C GHP 4 C ? ? ? 1_555 C GHP 5 N ? ? C GHP 4 C GHP 5 1_555 ? ? ? ? ? ? ? 1.352 ? ?
covale26 covale none ? C GHP 4 C3 ? ? ? 1_555 C OMY 6 OCZ ? ? C GHP 4 C OMY 6 1_555 ? ? ? ? ? ? ? 1.413 ? ?
covale27 covale one ? C GHP 4 O4 ? ? ? 1_555 O BGC . C1 ? ? C GHP 4 O BGC 1 1_555 ? ? ? ? ? ? ? 1.401 ? ?
covale28 covale both ? C GHP 5 C ? ? ? 1_555 C OMY 6 N ? ? C GHP 5 C OMY 6 1_555 ? ? ? ? ? ? ? 1.335 ? ?
covale29 covale one ? C GHP 5 C3 ? ? ? 1_555 C 3FG 7 CG1 ? ? C GHP 5 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.492 ? ?
covale30 covale both ? C OMY 6 C ? ? ? 1_555 C 3FG 7 N ? ? C OMY 6 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.344 ? ?
covale31 covale both ? D MLU 1 C ? ? ? 1_555 D OMZ 2 N ? ? D MLU 1 D OMZ 2 1_555 ? ? ? ? ? ? ? 1.353 ? ?
covale32 covale both ? D OMZ 2 C ? ? ? 1_555 D ASN 3 N ? ? D OMZ 2 D ASN 3 1_555 ? ? ? ? ? ? ? 1.352 ? ?
covale33 covale none ? D OMZ 2 OH ? ? ? 1_555 D GHP 4 C5 ? ? D OMZ 2 D GHP 4 1_555 ? ? ? ? ? ? ? 1.411 ? ?
covale34 covale both ? D ASN 3 C ? ? ? 1_555 D GHP 4 N ? ? D ASN 3 D GHP 4 1_555 ? ? ? ? ? ? ? 1.315 ? ?
covale35 covale both ? D GHP 4 C ? ? ? 1_555 D GHP 5 N ? ? D GHP 4 D GHP 5 1_555 ? ? ? ? ? ? ? 1.353 ? ?
covale36 covale none ? D GHP 4 C3 ? ? ? 1_555 D OMY 6 OCZ ? ? D GHP 4 D OMY 6 1_555 ? ? ? ? ? ? ? 1.397 ? ?
covale37 covale one ? D GHP 4 O4 ? ? ? 1_555 P BGC . C1 ? ? D GHP 4 P BGC 1 1_555 ? ? ? ? ? ? ? 1.408 ? ?
covale38 covale both ? D GHP 5 C ? ? ? 1_555 D OMY 6 N ? ? D GHP 5 D OMY 6 1_555 ? ? ? ? ? ? ? 1.348 ? ?
covale39 covale one ? D GHP 5 C3 ? ? ? 1_555 D 3FG 7 CG1 ? ? D GHP 5 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.510 ? ?
covale40 covale both ? D OMY 6 C ? ? ? 1_555 D 3FG 7 N ? ? D OMY 6 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.339 ? ?
covale41 covale both ? E MLU 1 C ? ? ? 1_555 E OMZ 2 N ? ? E MLU 1 E OMZ 2 1_555 ? ? ? ? ? ? ? 1.350 ? ?
covale42 covale both ? E OMZ 2 C ? ? ? 1_555 E ASN 3 N ? ? E OMZ 2 E ASN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ?
covale43 covale none ? E OMZ 2 OH ? ? ? 1_555 E GHP 4 C5 ? ? E OMZ 2 E GHP 4 1_555 ? ? ? ? ? ? ? 1.409 ? ?
covale44 covale both ? E ASN 3 C ? ? ? 1_555 E GHP 4 N ? ? E ASN 3 E GHP 4 1_555 ? ? ? ? ? ? ? 1.315 ? ?
covale45 covale both ? E GHP 4 C ? ? ? 1_555 E GHP 5 N ? ? E GHP 4 E GHP 5 1_555 ? ? ? ? ? ? ? 1.350 ? ?
covale46 covale none ? E GHP 4 C3 ? ? ? 1_555 E OMY 6 OCZ ? ? E GHP 4 E OMY 6 1_555 ? ? ? ? ? ? ? 1.404 ? ?
covale47 covale one ? E GHP 4 O4 ? ? ? 1_555 Q BGC . C1 ? ? E GHP 4 Q BGC 1 1_555 ? ? ? ? ? ? ? 1.391 ? ?
covale48 covale both ? E GHP 5 C ? ? ? 1_555 E OMY 6 N ? ? E GHP 5 E OMY 6 1_555 ? ? ? ? ? ? ? 1.339 ? ?
covale49 covale one ? E GHP 5 C3 ? ? ? 1_555 E 3FG 7 CG1 ? ? E GHP 5 E 3FG 7 1_555 ? ? ? ? ? ? ? 1.509 ? ?
covale50 covale both ? E OMY 6 C ? ? ? 1_555 E 3FG 7 N ? ? E OMY 6 E 3FG 7 1_555 ? ? ? ? ? ? ? 1.337 ? ?
covale51 covale both ? F MLU 1 C ? ? ? 1_555 F OMZ 2 N ? ? F MLU 1 F OMZ 2 1_555 ? ? ? ? ? ? ? 1.358 ? ?
covale52 covale both ? F OMZ 2 C ? ? ? 1_555 F ASN 3 N ? ? F OMZ 2 F ASN 3 1_555 ? ? ? ? ? ? ? 1.351 ? ?
covale53 covale none ? F OMZ 2 OH ? ? ? 1_555 F GHP 4 C5 ? ? F OMZ 2 F GHP 4 1_555 ? ? ? ? ? ? ? 1.409 ? ?
covale54 covale both ? F ASN 3 C ? ? ? 1_555 F GHP 4 N ? ? F ASN 3 F GHP 4 1_555 ? ? ? ? ? ? ? 1.316 ? ?
covale55 covale both ? F GHP 4 C ? ? ? 1_555 F GHP 5 N ? ? F GHP 4 F GHP 5 1_555 ? ? ? ? ? ? ? 1.345 ? ?
covale56 covale none ? F GHP 4 C3 ? ? ? 1_555 F OMY 6 OCZ ? ? F GHP 4 F OMY 6 1_555 ? ? ? ? ? ? ? 1.402 ? ?
covale57 covale one ? F GHP 4 O4 ? ? ? 1_555 R BGC . C1 ? ? F GHP 4 R BGC 1 1_555 ? ? ? ? ? ? ? 1.403 ? ?
covale58 covale both ? F GHP 5 C ? ? ? 1_555 F OMY 6 N ? ? F GHP 5 F OMY 6 1_555 ? ? ? ? ? ? ? 1.350 ? ?
covale59 covale one ? F GHP 5 C3 ? ? ? 1_555 F 3FG 7 CG1 ? ? F GHP 5 F 3FG 7 1_555 ? ? ? ? ? ? ? 1.498 ? ?
covale60 covale both ? F OMY 6 C ? ? ? 1_555 F 3FG 7 N ? ? F OMY 6 F 3FG 7 1_555 ? ? ? ? ? ? ? 1.356 ? ?
covale61 covale both ? G DLS 1 C ? ? ? 1_555 G DAL 2 N ? ? G DLS 1 G DAL 2 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale62 covale both ? G DAL 2 C ? ? ? 1_555 G DAL 3 N ? ? G DAL 2 G DAL 3 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale63 covale both ? H DLS 1 C ? ? ? 1_555 H DAL 2 N ? ? H DLS 1 H DAL 2 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale64 covale both ? H DAL 2 C ? ? ? 1_555 H DAL 3 N ? ? H DAL 2 H DAL 3 1_555 ? ? ? ? ? ? ? 1.331 ? ?
covale65 covale both ? I DLS 1 C ? ? ? 1_555 I DAL 2 N ? ? I DLS 1 I DAL 2 1_555 ? ? ? ? ? ? ? 1.341 ? ?
covale66 covale both ? I DAL 2 C ? ? ? 1_555 I DAL 3 N ? ? I DAL 2 I DAL 3 1_555 ? ? ? ? ? ? ? 1.340 ? ?
covale67 covale both ? J DLS 1 C ? ? ? 1_555 J DAL 2 N ? ? J DLS 1 J DAL 2 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale68 covale both ? J DAL 2 C ? ? ? 1_555 J DAL 3 N ? ? J DAL 2 J DAL 3 1_555 ? ? ? ? ? ? ? 1.340 ? ?
covale69 covale both ? K DLS 1 C ? ? ? 1_555 K DAL 2 N ? ? K DLS 1 K DAL 2 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale70 covale both ? K DAL 2 C ? ? ? 1_555 K DAL 3 N ? ? K DAL 2 K DAL 3 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale71 covale both ? L DLS 1 C ? ? ? 1_555 L DAL 2 N ? ? L DLS 1 L DAL 2 1_555 ? ? ? ? ? ? ? 1.335 ? ?
covale72 covale both ? L DAL 2 C ? ? ? 1_555 L DAL 3 N ? ? L DAL 2 L DAL 3 1_555 ? ? ? ? ? ? ? 1.338 ? ?
covale73 covale both ? M BGC . O2 ? ? ? 1_555 M RER . C1 ? ? M BGC 1 M RER 2 1_555 ? ? ? ? ? ? ? 1.419 ? ?
covale74 covale both ? N BGC . O2 ? ? ? 1_555 N RER . C1 ? ? N BGC 1 N RER 2 1_555 ? ? ? ? ? ? ? 1.418 ? ?
covale75 covale both ? O BGC . O2 ? ? ? 1_555 O RER . C1 ? ? O BGC 1 O RER 2 1_555 ? ? ? ? ? ? ? 1.418 ? ?
covale76 covale both ? P BGC . O2 ? ? ? 1_555 P RER . C1 ? ? P BGC 1 P RER 2 1_555 ? ? ? ? ? ? ? 1.419 ? ?
covale77 covale both ? Q BGC . O2 ? ? ? 1_555 Q RER . C1 ? ? Q BGC 1 Q RER 2 1_555 ? ? ? ? ? ? ? 1.422 ? ?
covale78 covale both ? R BGC . O2 ? ? ? 1_555 R RER . C1 ? ? R BGC 1 R RER 2 1_555 ? ? ? ? ? ? ? 1.419 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 1.25
2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 1.30
3 GHP 5 C . ? GHP 5 C OMY 6 C ? OMY 6 C 1 1.08
4 GHP 5 D . ? GHP 5 D OMY 6 D ? OMY 6 D 1 1.10
5 GHP 5 E . ? GHP 5 E OMY 6 E ? OMY 6 E 1 0.01
6 GHP 5 F . ? GHP 5 F OMY 6 F ? OMY 6 F 1 1.33
#
_database_PDB_matrix.entry_id 1FVM
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 1FVM
_atom_sites.fract_transf_matrix[1][1] 0.028061
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.027454
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015214
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CL
N
O
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MLU 1 1 1 MLU MLU A . n
A 1 2 OMZ 2 2 2 OMZ OMZ A . n
A 1 3 ASN 3 3 3 ASN ASN A . n
A 1 4 GHP 4 4 4 GHP GHP A . n
A 1 5 GHP 5 5 5 GHP GHP A . n
A 1 6 OMY 6 6 6 OMY OMY A . n
A 1 7 3FG 7 7 7 3FG 3FG A . n
B 1 1 MLU 1 1 1 MLU MLU B . n
B 1 2 OMZ 2 2 2 OMZ OMZ B . n
B 1 3 ASN 3 3 3 ASN ASN B . n
B 1 4 GHP 4 4 4 GHP GHP B . n
B 1 5 GHP 5 5 5 GHP GHP B . n
B 1 6 OMY 6 6 6 OMY OMY B . n
B 1 7 3FG 7 7 7 3FG 3FG B . n
C 1 1 MLU 1 1 1 MLU MLU C . n
C 1 2 OMZ 2 2 2 OMZ OMZ C . n
C 1 3 ASN 3 3 3 ASN ASN C . n
C 1 4 GHP 4 4 4 GHP GHP C . n
C 1 5 GHP 5 5 5 GHP GHP C . n
C 1 6 OMY 6 6 6 OMY OMY C . n
C 1 7 3FG 7 7 7 3FG 3FG C . n
D 1 1 MLU 1 1 1 MLU MLU D . n
D 1 2 OMZ 2 2 2 OMZ OMZ D . n
D 1 3 ASN 3 3 3 ASN ASN D . n
D 1 4 GHP 4 4 4 GHP GHP D . n
D 1 5 GHP 5 5 5 GHP GHP D . n
D 1 6 OMY 6 6 6 OMY OMY D . n
D 1 7 3FG 7 7 7 3FG 3FG D . n
E 1 1 MLU 1 1 1 MLU MLU E . n
E 1 2 OMZ 2 2 2 OMZ OMZ E . n
E 1 3 ASN 3 3 3 ASN ASN E . n
E 1 4 GHP 4 4 4 GHP GHP E . n
E 1 5 GHP 5 5 5 GHP GHP E . n
E 1 6 OMY 6 6 6 OMY OMY E . n
E 1 7 3FG 7 7 7 3FG 3FG E . n
F 1 1 MLU 1 1 1 MLU MLU F . n
F 1 2 OMZ 2 2 2 OMZ OMZ F . n
F 1 3 ASN 3 3 3 ASN ASN F . n
F 1 4 GHP 4 4 4 GHP GHP F . n
F 1 5 GHP 5 5 5 GHP GHP F . n
F 1 6 OMY 6 6 6 OMY OMY F . n
F 1 7 3FG 7 7 7 3FG 3FG F . n
G 2 1 DLS 1 1 1 DLS DLS G . n
G 2 2 DAL 2 2 2 DAL DAL G . n
G 2 3 DAL 3 3 3 DAL DAL G . n
H 2 1 DLS 1 1 1 DLS DLS H . n
H 2 2 DAL 2 2 2 DAL DAL H . n
H 2 3 DAL 3 3 3 DAL DAL H . n
I 2 1 DLS 1 1 1 DLS DLS I . n
I 2 2 DAL 2 2 2 DAL DAL I . n
I 2 3 DAL 3 3 3 DAL DAL I . n
J 2 1 DLS 1 1 1 DLS DLS J . n
J 2 2 DAL 2 2 2 DAL DAL J . n
J 2 3 DAL 3 3 3 DAL DAL J . n
K 2 1 DLS 1 1 1 DLS DLS K . n
K 2 2 DAL 2 2 2 DAL DAL K . n
K 2 3 DAL 3 3 3 DAL DAL K . n
L 2 1 DLS 1 1 1 DLS DLS L . n
L 2 2 DAL 2 2 2 DAL DAL L . n
L 2 3 DAL 3 3 3 DAL DAL L . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 4 HOH 1 2001 2001 HOH HOH A .
S 4 HOH 2 2002 2002 HOH HOH A .
S 4 HOH 3 2003 2003 HOH HOH A .
S 4 HOH 4 2004 2004 HOH HOH A .
S 4 HOH 5 2005 2005 HOH HOH A .
S 4 HOH 6 2006 2006 HOH HOH A .
S 4 HOH 7 2007 2007 HOH HOH A .
S 4 HOH 8 2008 2008 HOH HOH A .
S 4 HOH 9 2009 2009 HOH HOH A .
S 4 HOH 10 2010 2010 HOH HOH A .
S 4 HOH 11 2011 2011 HOH HOH A .
S 4 HOH 12 2012 2012 HOH HOH A .
S 4 HOH 13 2013 2013 HOH HOH A .
S 4 HOH 14 2014 2014 HOH HOH A .
S 4 HOH 15 2015 2015 HOH HOH A .
S 4 HOH 16 2016 2016 HOH HOH A .
S 4 HOH 17 2017 2017 HOH HOH A .
S 4 HOH 18 2018 2018 HOH HOH A .
S 4 HOH 19 2019 2019 HOH HOH A .
S 4 HOH 20 2020 2020 HOH HOH A .
T 4 HOH 1 2001 2001 HOH HOH B .
T 4 HOH 2 2002 2002 HOH HOH B .
T 4 HOH 3 2003 2003 HOH HOH B .
T 4 HOH 4 2004 2004 HOH HOH B .
T 4 HOH 5 2005 2005 HOH HOH B .
T 4 HOH 6 2006 2006 HOH HOH B .
T 4 HOH 7 2007 2007 HOH HOH B .
T 4 HOH 8 2008 2008 HOH HOH B .
T 4 HOH 9 2009 2009 HOH HOH B .
T 4 HOH 10 2010 2010 HOH HOH B .
T 4 HOH 11 2011 2011 HOH HOH B .
T 4 HOH 12 2012 2012 HOH HOH B .
T 4 HOH 13 2013 2013 HOH HOH B .
T 4 HOH 14 2014 2014 HOH HOH B .
T 4 HOH 15 2015 2015 HOH HOH B .
U 4 HOH 1 2001 2001 HOH HOH C .
U 4 HOH 2 2002 2002 HOH HOH C .
U 4 HOH 3 2003 2003 HOH HOH C .
U 4 HOH 4 2004 2004 HOH HOH C .
U 4 HOH 5 2005 2005 HOH HOH C .
U 4 HOH 6 2006 2006 HOH HOH C .
U 4 HOH 7 2007 2007 HOH HOH C .
U 4 HOH 8 2008 2008 HOH HOH C .
U 4 HOH 9 2009 2009 HOH HOH C .
U 4 HOH 10 2010 2010 HOH HOH C .
U 4 HOH 11 2011 2011 HOH HOH C .
U 4 HOH 12 2012 2012 HOH HOH C .
U 4 HOH 13 2013 2013 HOH HOH C .
U 4 HOH 14 2014 2014 HOH HOH C .
V 4 HOH 1 2001 2001 HOH HOH D .
V 4 HOH 2 2002 2002 HOH HOH D .
V 4 HOH 3 2003 2003 HOH HOH D .
V 4 HOH 4 2004 2004 HOH HOH D .
V 4 HOH 5 2005 2005 HOH HOH D .
V 4 HOH 6 2006 2006 HOH HOH D .
V 4 HOH 7 2007 2007 HOH HOH D .
V 4 HOH 8 2008 2008 HOH HOH D .
V 4 HOH 9 2009 2009 HOH HOH D .
V 4 HOH 10 2010 2010 HOH HOH D .
V 4 HOH 11 2011 2011 HOH HOH D .
V 4 HOH 12 2012 2012 HOH HOH D .
V 4 HOH 13 2013 2013 HOH HOH D .
W 4 HOH 1 2001 2001 HOH HOH E .
W 4 HOH 2 2002 2002 HOH HOH E .
W 4 HOH 3 2003 2003 HOH HOH E .
W 4 HOH 4 2004 2004 HOH HOH E .
W 4 HOH 5 2005 2005 HOH HOH E .
W 4 HOH 6 2006 2006 HOH HOH E .
W 4 HOH 7 2007 2007 HOH HOH E .
W 4 HOH 8 2008 2008 HOH HOH E .
W 4 HOH 9 2009 2009 HOH HOH E .
W 4 HOH 10 2010 2010 HOH HOH E .
W 4 HOH 11 2011 2011 HOH HOH E .
W 4 HOH 12 2012 2012 HOH HOH E .
W 4 HOH 13 2013 2013 HOH HOH E .
W 4 HOH 14 2014 2014 HOH HOH E .
W 4 HOH 15 2015 2015 HOH HOH E .
W 4 HOH 16 2016 2016 HOH HOH E .
W 4 HOH 17 2017 2017 HOH HOH E .
W 4 HOH 18 2018 2018 HOH HOH E .
W 4 HOH 19 2019 2019 HOH HOH E .
W 4 HOH 20 2020 2020 HOH HOH E .
W 4 HOH 21 2021 2021 HOH HOH E .
X 4 HOH 1 2001 2001 HOH HOH F .
X 4 HOH 2 2002 2002 HOH HOH F .
X 4 HOH 3 2003 2003 HOH HOH F .
X 4 HOH 4 2004 2004 HOH HOH F .
X 4 HOH 5 2005 2005 HOH HOH F .
X 4 HOH 6 2006 2006 HOH HOH F .
X 4 HOH 7 2007 2007 HOH HOH F .
X 4 HOH 8 2008 2008 HOH HOH F .
X 4 HOH 9 2009 2009 HOH HOH F .
X 4 HOH 10 2010 2010 HOH HOH F .
X 4 HOH 11 2011 2011 HOH HOH F .
X 4 HOH 12 2012 2012 HOH HOH F .
X 4 HOH 13 2013 2013 HOH HOH F .
X 4 HOH 14 2014 2014 HOH HOH F .
Y 4 HOH 1 2001 2001 HOH HOH G .
Y 4 HOH 2 2002 2002 HOH HOH G .
Y 4 HOH 3 2003 2003 HOH HOH G .
Z 4 HOH 1 2001 2001 HOH HOH H .
Z 4 HOH 2 2002 2002 HOH HOH H .
AA 4 HOH 1 2001 2001 HOH HOH I .
BA 4 HOH 1 2001 2001 HOH HOH J .
BA 4 HOH 2 2002 2002 HOH HOH J .
CA 4 HOH 1 2001 2001 HOH HOH K .
CA 4 HOH 2 2002 2002 HOH HOH K .
CA 4 HOH 3 2003 2003 HOH HOH K .
CA 4 HOH 4 2004 2004 HOH HOH K .
CA 4 HOH 5 2005 2005 HOH HOH K .
DA 4 HOH 1 2001 2001 HOH HOH L .
DA 4 HOH 2 2002 2002 HOH HOH L .
#
_pdbx_molecule_features.prd_id PRD_000204
_pdbx_molecule_features.name VANCOMYCIN
_pdbx_molecule_features.type Glycopeptide
_pdbx_molecule_features.class Antibiotic
_pdbx_molecule_features.details
;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE,
GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8
AND 9) ON RESIDUE 4.
;
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_000204 A
1 PRD_000204 M
2 PRD_000204 B
2 PRD_000204 N
3 PRD_000204 C
3 PRD_000204 O
4 PRD_000204 D
4 PRD_000204 P
5 PRD_000204 E
5 PRD_000204 Q
6 PRD_000204 F
6 PRD_000204 R
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 software_defined_assembly 'PISA 1.18' dimeric 2
2 software_defined_assembly 'PISA 1.18' dimeric 2
3 software_defined_assembly 'PISA 1.18' dimeric 2
4 software_defined_assembly 'PISA 1.18' dimeric 2
5 software_defined_assembly 'PISA 1.18' dimeric 2
6 software_defined_assembly 'PISA 1.18' dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,G,M,S,Y
2 1 B,H,N,T,Z
3 1 C,I,O,U,AA
4 1 D,J,P,V,BA
5 1 E,K,Q,W,CA
6 1 F,L,R,X,DA
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 910 ?
1 MORE -2.9 ?
1 'SSA (A^2)' 1540 ?
2 'ABSA (A^2)' 960 ?
2 MORE -3.6 ?
2 'SSA (A^2)' 1480 ?
3 'ABSA (A^2)' 940 ?
3 MORE -2.6 ?
3 'SSA (A^2)' 1540 ?
4 'ABSA (A^2)' 800 ?
4 MORE -2.7 ?
4 'SSA (A^2)' 1630 ?
5 'ABSA (A^2)' 970 ?
5 MORE -3.2 ?
5 'SSA (A^2)' 1430 ?
6 'ABSA (A^2)' 820 ?
6 MORE -2.7 ?
6 'SSA (A^2)' 1640 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2000-11-01
2 'Structure model' 1 1 2011-06-14
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2011-07-27
5 'Structure model' 1 4 2012-12-12
6 'Structure model' 2 0 2020-07-29
7 'Structure model' 2 1 2023-10-25
8 'Structure model' 2 2 2023-11-15
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Non-polymer description'
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' Other
9 6 'Structure model' 'Atomic model'
10 6 'Structure model' 'Data collection'
11 6 'Structure model' 'Derived calculations'
12 6 'Structure model' 'Polymer sequence'
13 6 'Structure model' 'Structure summary'
14 7 'Structure model' 'Data collection'
15 7 'Structure model' 'Database references'
16 7 'Structure model' 'Refinement description'
17 7 'Structure model' 'Structure summary'
18 8 'Structure model' 'Data collection'
19 8 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 6 'Structure model' atom_site
2 6 'Structure model' chem_comp
3 6 'Structure model' entity
4 6 'Structure model' entity_poly
5 6 'Structure model' pdbx_branch_scheme
6 6 'Structure model' pdbx_chem_comp_identifier
7 6 'Structure model' pdbx_entity_branch
8 6 'Structure model' pdbx_entity_branch_descriptor
9 6 'Structure model' pdbx_entity_branch_link
10 6 'Structure model' pdbx_entity_branch_list
11 6 'Structure model' pdbx_entity_nonpoly
12 6 'Structure model' pdbx_molecule
13 6 'Structure model' pdbx_nonpoly_scheme
14 6 'Structure model' pdbx_struct_assembly_gen
15 6 'Structure model' struct_asym
16 6 'Structure model' struct_conn
17 6 'Structure model' struct_site
18 6 'Structure model' struct_site_gen
19 7 'Structure model' chem_comp
20 7 'Structure model' chem_comp_atom
21 7 'Structure model' chem_comp_bond
22 7 'Structure model' database_2
23 7 'Structure model' pdbx_initial_refinement_model
24 8 'Structure model' chem_comp_atom
25 8 'Structure model' chem_comp_bond
26 8 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 6 'Structure model' '_atom_site.auth_asym_id'
2 6 'Structure model' '_atom_site.auth_seq_id'
3 6 'Structure model' '_atom_site.label_asym_id'
4 6 'Structure model' '_atom_site.label_entity_id'
5 6 'Structure model' '_chem_comp.name'
6 6 'Structure model' '_chem_comp.type'
7 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
8 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
9 6 'Structure model' '_struct_conn.pdbx_dist_value'
10 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
11 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
12 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
13 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
14 6 'Structure model' '_struct_conn.ptnr1_label_asym_id'
15 6 'Structure model' '_struct_conn.ptnr1_label_atom_id'
16 6 'Structure model' '_struct_conn.ptnr1_label_comp_id'
17 6 'Structure model' '_struct_conn.ptnr1_label_seq_id'
18 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
19 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
20 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
21 6 'Structure model' '_struct_conn.ptnr2_label_asym_id'
22 6 'Structure model' '_struct_conn.ptnr2_label_atom_id'
23 6 'Structure model' '_struct_conn.ptnr2_label_comp_id'
24 6 'Structure model' '_struct_conn.ptnr2_label_seq_id'
25 7 'Structure model' '_chem_comp.pdbx_synonyms'
26 7 'Structure model' '_database_2.pdbx_DOI'
27 7 'Structure model' '_database_2.pdbx_database_accession'
28 8 'Structure model' '_chem_comp_atom.atom_id'
29 8 'Structure model' '_chem_comp_bond.atom_id_2'
30 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
AMoRE phasing . ? 1
X-PLOR refinement 3.851 ? 2
MOSFLM 'data reduction' . ? 3
CCP4 'data scaling' '(SCALA)' ? 4
#
_pdbx_entry_details.entry_id 1FVM
_pdbx_entry_details.compound_details
;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS
A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE
AND VANCOSAMINE.
HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE
SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER.
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASN B 3 ? ? -126.84 -58.41
2 1 ASN D 3 ? ? -102.93 -62.46
3 1 ASN E 3 ? ? -114.68 -71.29
4 1 ASN F 3 ? ? -105.07 -68.28
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
3FG N N N N 1
3FG OD1 O N N 2
3FG CD1 C Y N 3
3FG CG1 C Y N 4
3FG CZ C Y N 5
3FG CD2 C Y N 6
3FG OD2 O N N 7
3FG CG2 C Y N 8
3FG CB C Y N 9
3FG CA C N S 10
3FG C C N N 11
3FG O O N N 12
3FG OXT O N N 13
3FG H H N N 14
3FG H2 H N N 15
3FG HA H N N 16
3FG HD1 H N N 17
3FG HG1 H N N 18
3FG HZ H N N 19
3FG HD2 H N N 20
3FG HG2 H N N 21
3FG HXT H N N 22
ASN N N N N 23
ASN CA C N S 24
ASN C C N N 25
ASN O O N N 26
ASN CB C N N 27
ASN CG C N N 28
ASN OD1 O N N 29
ASN ND2 N N N 30
ASN OXT O N N 31
ASN H H N N 32
ASN H2 H N N 33
ASN HA H N N 34
ASN HB2 H N N 35
ASN HB3 H N N 36
ASN HD21 H N N 37
ASN HD22 H N N 38
ASN HXT H N N 39
BGC C2 C N R 40
BGC C3 C N S 41
BGC C4 C N S 42
BGC C5 C N R 43
BGC C6 C N N 44
BGC C1 C N R 45
BGC O1 O N N 46
BGC O2 O N N 47
BGC O3 O N N 48
BGC O4 O N N 49
BGC O5 O N N 50
BGC O6 O N N 51
BGC H2 H N N 52
BGC H3 H N N 53
BGC H4 H N N 54
BGC H5 H N N 55
BGC H61 H N N 56
BGC H62 H N N 57
BGC H1 H N N 58
BGC HO1 H N N 59
BGC HO2 H N N 60
BGC HO3 H N N 61
BGC HO4 H N N 62
BGC HO6 H N N 63
DAL N N N N 64
DAL CA C N R 65
DAL CB C N N 66
DAL C C N N 67
DAL O O N N 68
DAL OXT O N N 69
DAL H H N N 70
DAL H2 H N N 71
DAL HA H N N 72
DAL HB1 H N N 73
DAL HB2 H N N 74
DAL HB3 H N N 75
DAL HXT H N N 76
DLS C2 C N N 77
DLS O1 O N N 78
DLS C1 C N N 79
DLS N N N N 80
DLS CA C N S 81
DLS C C N N 82
DLS O O N N 83
DLS CB C N N 84
DLS CG C N N 85
DLS CD C N N 86
DLS CE C N N 87
DLS NZ N N N 88
DLS CH3 C N N 89
DLS OH O N N 90
DLS CH C N N 91
DLS OXT O N N 92
DLS H21 H N N 93
DLS H22 H N N 94
DLS H23 H N N 95
DLS H H N N 96
DLS HCA H N N 97
DLS HB2 H N N 98
DLS HB3 H N N 99
DLS HG2 H N N 100
DLS HG3 H N N 101
DLS HD2 H N N 102
DLS HD3 H N N 103
DLS HE2 H N N 104
DLS HE3 H N N 105
DLS HZ H N N 106
DLS HH31 H N N 107
DLS HH32 H N N 108
DLS HH33 H N N 109
DLS HXT H N N 110
GHP N N N N 111
GHP CA C N R 112
GHP C C N N 113
GHP O O N N 114
GHP OXT O N N 115
GHP C1 C Y N 116
GHP C2 C Y N 117
GHP C3 C Y N 118
GHP C4 C Y N 119
GHP O4 O N N 120
GHP C5 C Y N 121
GHP C6 C Y N 122
GHP H H N N 123
GHP H2 H N N 124
GHP HA H N N 125
GHP HXT H N N 126
GHP HC2 H N N 127
GHP H3 H N N 128
GHP HO4 H N N 129
GHP H5 H N N 130
GHP H6 H N N 131
HOH O O N N 132
HOH H1 H N N 133
HOH H2 H N N 134
MLU N N N N 135
MLU CN C N N 136
MLU CA C N R 137
MLU C C N N 138
MLU O O N N 139
MLU CB C N N 140
MLU CG C N N 141
MLU CD1 C N N 142
MLU CD2 C N N 143
MLU OXT O N N 144
MLU H H N N 145
MLU HCN1 H N N 146
MLU HCN2 H N N 147
MLU HCN3 H N N 148
MLU HA H N N 149
MLU HB2 H N N 150
MLU HB3 H N N 151
MLU HXT H N N 152
MLU HG H N N 153
MLU HD11 H N N 154
MLU HD12 H N N 155
MLU HD13 H N N 156
MLU HD21 H N N 157
MLU HD22 H N N 158
MLU HD23 H N N 159
OMY N N N N 160
OMY CA C N S 161
OMY OCZ O N N 162
OMY CE2 C Y N 163
OMY CE1 C Y N 164
OMY CZ C Y N 165
OMY CG C Y N 166
OMY CD2 C Y N 167
OMY CD1 C Y N 168
OMY CB C N R 169
OMY CL CL N N 170
OMY O O N N 171
OMY C C N N 172
OMY ODE O N N 173
OMY OXT O N N 174
OMY H H N N 175
OMY H2 H N N 176
OMY HA H N N 177
OMY HCZ H N N 178
OMY HE2 H N N 179
OMY HD2 H N N 180
OMY HD1 H N N 181
OMY HB H N N 182
OMY HXT H N N 183
OMY HDE H N N 184
OMZ N N N N 185
OMZ CA C N R 186
OMZ C C N N 187
OMZ O O N N 188
OMZ OXT O N N 189
OMZ CB C N R 190
OMZ OC O N N 191
OMZ CG C Y N 192
OMZ CD1 C Y N 193
OMZ CD2 C Y N 194
OMZ CE1 C Y N 195
OMZ CL CL N N 196
OMZ CE2 C Y N 197
OMZ CZ C Y N 198
OMZ OH O N N 199
OMZ H H N N 200
OMZ H2 H N N 201
OMZ HA H N N 202
OMZ HB H N N 203
OMZ HXT H N N 204
OMZ HC H N N 205
OMZ HD1 H N N 206
OMZ HD2 H N N 207
OMZ HE2 H N N 208
OMZ HH H N N 209
RER C1 C N R 210
RER C2 C N N 211
RER C3 C N S 212
RER N3 N N N 213
RER C3A C N N 214
RER C4 C N S 215
RER O4 O N N 216
RER C5 C N S 217
RER O5 O N N 218
RER C5A C N N 219
RER O1 O N N 220
RER H1 H N N 221
RER H21C H N N 222
RER H22C H N N 223
RER HO1 H N N 224
RER H31N H N N 225
RER H32N H N N 226
RER H3A1 H N N 227
RER H3A2 H N N 228
RER H3A3 H N N 229
RER H4 H N N 230
RER HO4 H N N 231
RER H5 H N N 232
RER H5A1 H N N 233
RER H5A2 H N N 234
RER H5A3 H N N 235
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3FG N CA sing N N 1
3FG OD1 CD1 sing N N 2
3FG CD1 CG1 sing Y N 3
3FG CD1 CZ doub Y N 4
3FG CG1 CB doub Y N 5
3FG CZ CD2 sing Y N 6
3FG CD2 OD2 sing N N 7
3FG CD2 CG2 doub Y N 8
3FG CG2 CB sing Y N 9
3FG CB CA sing N N 10
3FG CA C sing N N 11
3FG C O doub N N 12
3FG C OXT sing N N 13
3FG N H sing N N 14
3FG N H2 sing N N 15
3FG CA HA sing N N 16
3FG OD1 HD1 sing N N 17
3FG CG1 HG1 sing N N 18
3FG CZ HZ sing N N 19
3FG OD2 HD2 sing N N 20
3FG CG2 HG2 sing N N 21
3FG OXT HXT sing N N 22
ASN N CA sing N N 23
ASN N H sing N N 24
ASN N H2 sing N N 25
ASN CA C sing N N 26
ASN CA CB sing N N 27
ASN CA HA sing N N 28
ASN C O doub N N 29
ASN C OXT sing N N 30
ASN CB CG sing N N 31
ASN CB HB2 sing N N 32
ASN CB HB3 sing N N 33
ASN CG OD1 doub N N 34
ASN CG ND2 sing N N 35
ASN ND2 HD21 sing N N 36
ASN ND2 HD22 sing N N 37
ASN OXT HXT sing N N 38
BGC C2 C3 sing N N 39
BGC C2 C1 sing N N 40
BGC C2 O2 sing N N 41
BGC C2 H2 sing N N 42
BGC C3 C4 sing N N 43
BGC C3 O3 sing N N 44
BGC C3 H3 sing N N 45
BGC C4 C5 sing N N 46
BGC C4 O4 sing N N 47
BGC C4 H4 sing N N 48
BGC C5 C6 sing N N 49
BGC C5 O5 sing N N 50
BGC C5 H5 sing N N 51
BGC C6 O6 sing N N 52
BGC C6 H61 sing N N 53
BGC C6 H62 sing N N 54
BGC C1 O1 sing N N 55
BGC C1 O5 sing N N 56
BGC C1 H1 sing N N 57
BGC O1 HO1 sing N N 58
BGC O2 HO2 sing N N 59
BGC O3 HO3 sing N N 60
BGC O4 HO4 sing N N 61
BGC O6 HO6 sing N N 62
DAL N CA sing N N 63
DAL N H sing N N 64
DAL N H2 sing N N 65
DAL CA CB sing N N 66
DAL CA C sing N N 67
DAL CA HA sing N N 68
DAL CB HB1 sing N N 69
DAL CB HB2 sing N N 70
DAL CB HB3 sing N N 71
DAL C O doub N N 72
DAL C OXT sing N N 73
DAL OXT HXT sing N N 74
DLS C2 C1 sing N N 75
DLS C2 H21 sing N N 76
DLS C2 H22 sing N N 77
DLS C2 H23 sing N N 78
DLS O1 C1 doub N N 79
DLS C1 N sing N N 80
DLS N CA sing N N 81
DLS N H sing N N 82
DLS CA C sing N N 83
DLS CA CB sing N N 84
DLS CA HCA sing N N 85
DLS C O doub N N 86
DLS C OXT sing N N 87
DLS CB CG sing N N 88
DLS CB HB2 sing N N 89
DLS CB HB3 sing N N 90
DLS CG CD sing N N 91
DLS CG HG2 sing N N 92
DLS CG HG3 sing N N 93
DLS CD CE sing N N 94
DLS CD HD2 sing N N 95
DLS CD HD3 sing N N 96
DLS CE NZ sing N N 97
DLS CE HE2 sing N N 98
DLS CE HE3 sing N N 99
DLS NZ CH sing N N 100
DLS NZ HZ sing N N 101
DLS CH3 CH sing N N 102
DLS CH3 HH31 sing N N 103
DLS CH3 HH32 sing N N 104
DLS CH3 HH33 sing N N 105
DLS OH CH doub N N 106
DLS OXT HXT sing N N 107
GHP N CA sing N N 108
GHP N H sing N N 109
GHP N H2 sing N N 110
GHP CA C sing N N 111
GHP CA C1 sing N N 112
GHP CA HA sing N N 113
GHP C O doub N N 114
GHP C OXT sing N N 115
GHP OXT HXT sing N N 116
GHP C1 C2 doub Y N 117
GHP C1 C6 sing Y N 118
GHP C2 C3 sing Y N 119
GHP C2 HC2 sing N N 120
GHP C3 C4 doub Y N 121
GHP C3 H3 sing N N 122
GHP C4 O4 sing N N 123
GHP C4 C5 sing Y N 124
GHP O4 HO4 sing N N 125
GHP C5 C6 doub Y N 126
GHP C5 H5 sing N N 127
GHP C6 H6 sing N N 128
HOH O H1 sing N N 129
HOH O H2 sing N N 130
MLU N CN sing N N 131
MLU N CA sing N N 132
MLU CA C sing N N 133
MLU CA CB sing N N 134
MLU C O doub N N 135
MLU C OXT sing N N 136
MLU CB CG sing N N 137
MLU CG CD1 sing N N 138
MLU CG CD2 sing N N 139
MLU N H sing N N 140
MLU CN HCN1 sing N N 141
MLU CN HCN2 sing N N 142
MLU CN HCN3 sing N N 143
MLU CA HA sing N N 144
MLU CB HB2 sing N N 145
MLU CB HB3 sing N N 146
MLU OXT HXT sing N N 147
MLU CG HG sing N N 148
MLU CD1 HD11 sing N N 149
MLU CD1 HD12 sing N N 150
MLU CD1 HD13 sing N N 151
MLU CD2 HD21 sing N N 152
MLU CD2 HD22 sing N N 153
MLU CD2 HD23 sing N N 154
OMY N CA sing N N 155
OMY OCZ CZ sing N N 156
OMY CZ CE2 sing Y N 157
OMY CZ CE1 doub Y N 158
OMY CE2 CD2 doub Y N 159
OMY CD2 CG sing Y N 160
OMY CG CD1 doub Y N 161
OMY CG CB sing N N 162
OMY CD1 CE1 sing Y N 163
OMY CE1 CL sing N N 164
OMY C O doub N N 165
OMY C CA sing N N 166
OMY C OXT sing N N 167
OMY CA CB sing N N 168
OMY CB ODE sing N N 169
OMY N H sing N N 170
OMY N H2 sing N N 171
OMY CA HA sing N N 172
OMY OCZ HCZ sing N N 173
OMY CE2 HE2 sing N N 174
OMY CD2 HD2 sing N N 175
OMY CD1 HD1 sing N N 176
OMY CB HB sing N N 177
OMY OXT HXT sing N N 178
OMY ODE HDE sing N N 179
OMZ N CA sing N N 180
OMZ CA C sing N N 181
OMZ CA CB sing N N 182
OMZ C O doub N N 183
OMZ C OXT sing N N 184
OMZ CL CE1 sing N N 185
OMZ CB OC sing N N 186
OMZ CB CG sing N N 187
OMZ CG CD1 doub Y N 188
OMZ CG CD2 sing Y N 189
OMZ CD1 CE1 sing Y N 190
OMZ CD2 CE2 doub Y N 191
OMZ CE1 CZ doub Y N 192
OMZ CE2 CZ sing Y N 193
OMZ CZ OH sing N N 194
OMZ N H sing N N 195
OMZ N H2 sing N N 196
OMZ CA HA sing N N 197
OMZ CB HB sing N N 198
OMZ OXT HXT sing N N 199
OMZ OC HC sing N N 200
OMZ CD1 HD1 sing N N 201
OMZ CD2 HD2 sing N N 202
OMZ CE2 HE2 sing N N 203
OMZ OH HH sing N N 204
RER C1 C2 sing N N 205
RER C1 O5 sing N N 206
RER C1 O1 sing N N 207
RER C2 C3 sing N N 208
RER C3 N3 sing N N 209
RER C3 C3A sing N N 210
RER C3 C4 sing N N 211
RER C4 O4 sing N N 212
RER C4 C5 sing N N 213
RER C5 O5 sing N N 214
RER C5 C5A sing N N 215
RER C1 H1 sing N N 216
RER C2 H21C sing N N 217
RER C2 H22C sing N N 218
RER O1 HO1 sing N N 219
RER N3 H31N sing N N 220
RER N3 H32N sing N N 221
RER C3A H3A1 sing N N 222
RER C3A H3A2 sing N N 223
RER C3A H3A3 sing N N 224
RER C4 H4 sing N N 225
RER O4 HO4 sing N N 226
RER C5 H5 sing N N 227
RER C5A H5A1 sing N N 228
RER C5A H5A2 sing N N 229
RER C5A H5A3 sing N N 230
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
M 3 BGC 1 M BGC 1 A BGC 8 n
M 3 RER 2 M RER 2 A RER 9 n
N 3 BGC 1 N BGC 1 B BGC 8 n
N 3 RER 2 N RER 2 B RER 9 n
O 3 BGC 1 O BGC 1 C BGC 8 n
O 3 RER 2 O RER 2 C RER 9 n
P 3 BGC 1 P BGC 1 D BGC 8 n
P 3 RER 2 P RER 2 D RER 9 n
Q 3 BGC 1 Q BGC 1 E BGC 8 n
Q 3 RER 2 Q RER 2 E RER 9 n
R 3 BGC 1 R BGC 1 F BGC 8 n
R 3 RER 2 R RER 2 F RER 9 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
#
_pdbx_entity_branch.entity_id 3
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 3 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0
2 3 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 3
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 RER
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 BGC
_pdbx_entity_branch_link.atom_id_2 O2
_pdbx_entity_branch_link.leaving_atom_id_2 HO2
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
3 BGC 1 n
3 RER 2 n
#
_pdbx_entity_nonpoly.entity_id 4
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1AA5
_pdbx_initial_refinement_model.details 'PDB ENTRY 1AA5'
#