HEADER LIGASE 02-OCT-00 1FYJ TITLE SOLUTION STRUCTURE OF MULTI-FUNCTIONAL PEPTIDE MOTIF-1 PRESENT IN TITLE 2 HUMAN GLUTAMYL-PROLYL TRNA SYNTHETASE (EPRS). COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 677-733; COMPND 5 EC: 6.1.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HELIX-TURN-HELIX, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.-J.JEONG,G.-S.HWANG,K.H.KIM,M.J.KIM,S.KIM,K.-S.KIM REVDAT 5 23-FEB-22 1FYJ 1 REMARK REVDAT 4 24-FEB-09 1FYJ 1 VERSN REVDAT 3 01-APR-03 1FYJ 1 JRNL REVDAT 2 31-DEC-02 1FYJ 1 REMARK REVDAT 1 14-MAR-01 1FYJ 0 JRNL AUTH E.J.JEONG,G.S.HWANG,K.H.KIM,M.J.KIM,S.KIM,K.S.KIM JRNL TITL STRUCTURAL ANALYSIS OF MULTIFUNCTIONAL PEPTIDE MOTIFS IN JRNL TITL 2 HUMAN BIFUNCTIONAL TRNA SYNTHETASE: IDENTIFICATION OF JRNL TITL 3 RNA-BINDING RESIDUES AND FUNCTIONAL IMPLICATIONS FOR TANDEM JRNL TITL 4 REPEATS. JRNL REF BIOCHEMISTRY V. 39 15775 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11123902 JRNL DOI 10.1021/BI001393H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.7, X-PLOR 3.851 REMARK 3 AUTHORS : DELAGLIO,F. (NMRPIPE), BUNGER, A.T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 814 NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 91 DIHEDRAL ANGLE RESTRAINTS,29 HYDROGEN BONDS RESTRAINTS, AND REMARK 3 49 J COUPLING CONSTANTS ARE USED. REMARK 4 REMARK 4 1FYJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000012017. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NO SALT REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ~2MM EPRS-R1 U-15N; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; DQF-COSY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP 4.2.5, X-PLOR 3.851 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 47 25.16 -156.21 REMARK 500 1 GLU A 50 -166.37 38.05 REMARK 500 1 ASN A 55 177.71 54.25 REMARK 500 2 THR A 47 23.47 -156.26 REMARK 500 2 GLU A 50 92.14 33.54 REMARK 500 2 ASN A 55 177.35 54.62 REMARK 500 3 THR A 47 19.29 -151.51 REMARK 500 3 GLU A 50 -176.33 39.75 REMARK 500 3 ASN A 55 59.45 -143.75 REMARK 500 4 ALA A 24 170.33 -58.47 REMARK 500 4 THR A 47 29.39 -165.78 REMARK 500 4 GLU A 50 98.48 32.31 REMARK 500 4 ASN A 55 174.50 56.60 REMARK 500 5 LYS A 46 -77.71 -62.82 REMARK 500 5 THR A 47 40.45 -161.49 REMARK 500 5 GLU A 50 92.87 32.21 REMARK 500 6 THR A 47 32.79 -165.94 REMARK 500 6 GLU A 50 114.98 39.47 REMARK 500 6 ASN A 55 179.91 55.52 REMARK 500 7 THR A 47 -70.92 -156.37 REMARK 500 7 GLN A 49 -30.26 -140.98 REMARK 500 7 ASN A 55 174.77 57.58 REMARK 500 8 THR A 47 29.57 -161.43 REMARK 500 8 GLU A 50 -157.76 35.97 REMARK 500 8 ASN A 55 165.55 55.46 REMARK 500 9 THR A 47 45.29 -160.18 REMARK 500 9 GLU A 50 178.44 -52.41 REMARK 500 9 TYR A 51 102.94 -55.13 REMARK 500 9 ASN A 55 174.31 55.00 REMARK 500 10 LYS A 46 -85.01 -63.71 REMARK 500 10 THR A 47 51.75 -159.97 REMARK 500 10 ASN A 55 178.69 55.63 REMARK 500 11 LYS A 23 19.94 58.97 REMARK 500 11 THR A 47 16.13 -157.91 REMARK 500 11 GLU A 50 175.18 40.91 REMARK 500 11 ASN A 55 179.82 54.46 REMARK 500 12 THR A 47 28.89 -165.55 REMARK 500 12 GLU A 50 100.22 30.26 REMARK 500 12 ASN A 55 -178.15 52.01 REMARK 500 13 THR A 47 16.47 -156.61 REMARK 500 13 GLU A 50 -175.10 40.64 REMARK 500 14 THR A 47 18.21 -156.16 REMARK 500 14 GLU A 50 -156.03 35.92 REMARK 500 14 ASN A 55 177.80 55.98 REMARK 500 15 THR A 47 12.52 -159.46 REMARK 500 15 GLU A 50 85.80 30.28 REMARK 500 15 ASN A 55 -178.81 53.34 REMARK 500 16 LYS A 46 -74.93 -65.83 REMARK 500 16 THR A 47 30.17 -160.05 REMARK 500 16 GLU A 50 97.56 31.23 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.22 SIDE CHAIN REMARK 500 1 ARG A 17 0.27 SIDE CHAIN REMARK 500 2 ARG A 8 0.32 SIDE CHAIN REMARK 500 2 ARG A 17 0.32 SIDE CHAIN REMARK 500 3 ARG A 8 0.30 SIDE CHAIN REMARK 500 3 ARG A 17 0.27 SIDE CHAIN REMARK 500 4 ARG A 8 0.28 SIDE CHAIN REMARK 500 4 ARG A 17 0.32 SIDE CHAIN REMARK 500 5 ARG A 8 0.31 SIDE CHAIN REMARK 500 5 ARG A 17 0.29 SIDE CHAIN REMARK 500 6 ARG A 8 0.25 SIDE CHAIN REMARK 500 6 ARG A 17 0.32 SIDE CHAIN REMARK 500 7 ARG A 8 0.29 SIDE CHAIN REMARK 500 7 ARG A 17 0.23 SIDE CHAIN REMARK 500 8 ARG A 8 0.32 SIDE CHAIN REMARK 500 8 ARG A 17 0.27 SIDE CHAIN REMARK 500 9 ARG A 8 0.22 SIDE CHAIN REMARK 500 9 ARG A 17 0.30 SIDE CHAIN REMARK 500 10 ARG A 8 0.24 SIDE CHAIN REMARK 500 10 ARG A 17 0.32 SIDE CHAIN REMARK 500 11 ARG A 8 0.31 SIDE CHAIN REMARK 500 11 ARG A 17 0.27 SIDE CHAIN REMARK 500 12 ARG A 8 0.32 SIDE CHAIN REMARK 500 12 ARG A 17 0.26 SIDE CHAIN REMARK 500 13 ARG A 8 0.31 SIDE CHAIN REMARK 500 13 ARG A 17 0.28 SIDE CHAIN REMARK 500 14 ARG A 8 0.32 SIDE CHAIN REMARK 500 14 ARG A 17 0.24 SIDE CHAIN REMARK 500 15 ARG A 8 0.31 SIDE CHAIN REMARK 500 15 ARG A 17 0.32 SIDE CHAIN REMARK 500 16 ARG A 8 0.25 SIDE CHAIN REMARK 500 16 ARG A 17 0.28 SIDE CHAIN REMARK 500 17 ARG A 8 0.32 SIDE CHAIN REMARK 500 17 ARG A 17 0.24 SIDE CHAIN REMARK 500 18 ARG A 8 0.26 SIDE CHAIN REMARK 500 18 ARG A 17 0.32 SIDE CHAIN REMARK 500 19 ARG A 8 0.31 SIDE CHAIN REMARK 500 19 ARG A 17 0.32 SIDE CHAIN REMARK 500 20 ARG A 8 0.26 SIDE CHAIN REMARK 500 20 ARG A 17 0.32 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1FYJ A 1 57 UNP P07814 SYEP_HUMAN 677 733 SEQRES 1 A 57 ASP SER LEU VAL LEU TYR ASN ARG VAL ALA VAL GLN GLY SEQRES 2 A 57 ASP VAL VAL ARG GLU LEU LYS ALA LYS LYS ALA PRO LYS SEQRES 3 A 57 GLU ASP VAL ASP ALA ALA VAL LYS GLN LEU LEU SER LEU SEQRES 4 A 57 LYS ALA GLU TYR LYS GLU LYS THR GLY GLN GLU TYR LYS SEQRES 5 A 57 PRO GLY ASN PRO PRO HELIX 1 1 ASP A 1 LYS A 22 1 22 HELIX 2 2 PRO A 25 GLY A 48 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1