data_1FYV # _entry.id 1FYV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1FYV RCSB RCSB012028 WWPDB D_1000012028 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FYV _pdbx_database_status.recvd_initial_deposition_date 2000-10-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, Y.' 1 'Tao, X.' 2 'Shen, B.' 3 'Horng, T.' 4 'Medzhitov, R.' 5 'Manley, J.L.' 6 'Tong, L.' 7 # _citation.id primary _citation.title 'Structural basis for signal transduction by the Toll/interleukin-1 receptor domains.' _citation.journal_abbrev Nature _citation.journal_volume 408 _citation.page_first 111 _citation.page_last 115 _citation.year 2000 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11081518 _citation.pdbx_database_id_DOI 10.1038/35047056 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Xu, Y.' 1 primary 'Tao, X.' 2 primary 'Shen, B.' 3 primary 'Horng, T.' 4 primary 'Medzhitov, R.' 5 primary 'Manley, J.L.' 6 primary 'Tong, L.' 7 # _cell.entry_id 1FYV _cell.length_a 101.3 _cell.length_b 101.3 _cell.length_c 137.9 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FYV _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'TOLL-LIKE RECEPTOR 1' _entity.formula_weight 19081.670 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'TIR DOMAIN' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;NIPLEELQRNLQFHAFISYSGHDSFWVKNELLPNLEKEG(MSE)QICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPN FVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSL(MSE)ARRTYLEWPKEKSKRGLFWANLRAAI NIKLTEQAK ; _entity_poly.pdbx_seq_one_letter_code_can ;NIPLEELQRNLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS EWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLFWANLRAAINIKLTEQA K ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 ILE n 1 3 PRO n 1 4 LEU n 1 5 GLU n 1 6 GLU n 1 7 LEU n 1 8 GLN n 1 9 ARG n 1 10 ASN n 1 11 LEU n 1 12 GLN n 1 13 PHE n 1 14 HIS n 1 15 ALA n 1 16 PHE n 1 17 ILE n 1 18 SER n 1 19 TYR n 1 20 SER n 1 21 GLY n 1 22 HIS n 1 23 ASP n 1 24 SER n 1 25 PHE n 1 26 TRP n 1 27 VAL n 1 28 LYS n 1 29 ASN n 1 30 GLU n 1 31 LEU n 1 32 LEU n 1 33 PRO n 1 34 ASN n 1 35 LEU n 1 36 GLU n 1 37 LYS n 1 38 GLU n 1 39 GLY n 1 40 MSE n 1 41 GLN n 1 42 ILE n 1 43 CYS n 1 44 LEU n 1 45 HIS n 1 46 GLU n 1 47 ARG n 1 48 ASN n 1 49 PHE n 1 50 VAL n 1 51 PRO n 1 52 GLY n 1 53 LYS n 1 54 SER n 1 55 ILE n 1 56 VAL n 1 57 GLU n 1 58 ASN n 1 59 ILE n 1 60 ILE n 1 61 THR n 1 62 CYS n 1 63 ILE n 1 64 GLU n 1 65 LYS n 1 66 SER n 1 67 TYR n 1 68 LYS n 1 69 SER n 1 70 ILE n 1 71 PHE n 1 72 VAL n 1 73 LEU n 1 74 SER n 1 75 PRO n 1 76 ASN n 1 77 PHE n 1 78 VAL n 1 79 GLN n 1 80 SER n 1 81 GLU n 1 82 TRP n 1 83 CYS n 1 84 HIS n 1 85 TYR n 1 86 GLU n 1 87 LEU n 1 88 TYR n 1 89 PHE n 1 90 ALA n 1 91 HIS n 1 92 HIS n 1 93 ASN n 1 94 LEU n 1 95 PHE n 1 96 HIS n 1 97 GLU n 1 98 GLY n 1 99 SER n 1 100 ASN n 1 101 SER n 1 102 LEU n 1 103 ILE n 1 104 LEU n 1 105 ILE n 1 106 LEU n 1 107 LEU n 1 108 GLU n 1 109 PRO n 1 110 ILE n 1 111 PRO n 1 112 GLN n 1 113 TYR n 1 114 SER n 1 115 ILE n 1 116 PRO n 1 117 SER n 1 118 SER n 1 119 TYR n 1 120 HIS n 1 121 LYS n 1 122 LEU n 1 123 LYS n 1 124 SER n 1 125 LEU n 1 126 MSE n 1 127 ALA n 1 128 ARG n 1 129 ARG n 1 130 THR n 1 131 TYR n 1 132 LEU n 1 133 GLU n 1 134 TRP n 1 135 PRO n 1 136 LYS n 1 137 GLU n 1 138 LYS n 1 139 SER n 1 140 LYS n 1 141 ARG n 1 142 GLY n 1 143 LEU n 1 144 PHE n 1 145 TRP n 1 146 ALA n 1 147 ASN n 1 148 LEU n 1 149 ARG n 1 150 ALA n 1 151 ALA n 1 152 ILE n 1 153 ASN n 1 154 ILE n 1 155 LYS n 1 156 LEU n 1 157 THR n 1 158 GLU n 1 159 GLN n 1 160 ALA n 1 161 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code TLR1_HUMAN _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q15399 _struct_ref.pdbx_align_begin 625 _struct_ref.pdbx_seq_one_letter_code ;NIPLEELQRNLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS EWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLFWANLRAAINIKLTEQA K ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1FYV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15399 _struct_ref_seq.db_align_beg 625 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 785 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 625 _struct_ref_seq.pdbx_auth_seq_align_end 785 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1FYV MSE A 40 ? UNP Q15399 MET 664 'MODIFIED RESIDUE' 664 1 1 1FYV MSE A 126 ? UNP Q15399 MET 750 'MODIFIED RESIDUE' 750 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1FYV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 77.02 _exptl_crystal.density_Matthews 5.35 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 294.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM Tris, 1.2M NaH2PO4/K2HPO4 5 mM DTT, 20% glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 21K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 1999-11-12 ? 2 CCD 'ADSC QUANTUM 4' 2000-01-20 ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.98 1.0 2 0.909 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'NSLS BEAMLINE X4A' 0.98 NSLS X4A ? 2 SYNCHROTRON 'CHESS BEAMLINE A1' 0.909 CHESS A1 ? # _reflns.entry_id 1FYV _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F .5 _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.9 _reflns.number_obs 9374 _reflns.number_all 9700 _reflns.percent_possible_obs 97 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 40 _reflns.B_iso_Wilson_estimate 35 _reflns.pdbx_redundancy 5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 91 _reflns_shell.Rmerge_I_obs 0.17 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3 _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1FYV _refine.ls_number_reflns_obs 8496 _refine.ls_number_reflns_all 9700 _refine.pdbx_ls_sigma_I 2 _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.9 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.254 _refine.ls_R_factor_all 0.26 _refine.ls_R_factor_R_work 0.254 _refine.ls_R_factor_R_free 0.296 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 7.5% _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1342 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1342 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1FYV _struct.title 'CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR1' _struct.pdbx_descriptor 'TOLL-LIKE RECEPTOR 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FYV _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'beta-alpha-beta fold parallel beta sheet, SIGNALING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 20 ? HIS A 22 ? SER A 644 HIS A 646 5 ? 3 HELX_P HELX_P2 2 ASP A 23 ? GLU A 30 ? ASP A 647 GLU A 654 1 ? 8 HELX_P HELX_P3 3 GLU A 30 ? LYS A 37 ? GLU A 654 LYS A 661 1 ? 8 HELX_P HELX_P4 4 SER A 54 ? LYS A 65 ? SER A 678 LYS A 689 1 ? 12 HELX_P HELX_P5 5 SER A 74 ? GLU A 81 ? SER A 698 GLU A 705 1 ? 8 HELX_P HELX_P6 6 TRP A 82 ? PHE A 89 ? TRP A 706 PHE A 713 1 ? 8 HELX_P HELX_P7 7 PRO A 111 ? ILE A 115 ? PRO A 735 ILE A 739 5 ? 5 HELX_P HELX_P8 8 TYR A 119 ? ARG A 128 ? TYR A 743 ARG A 752 1 ? 10 HELX_P HELX_P9 9 GLU A 137 ? ARG A 141 ? GLU A 761 ARG A 765 5 ? 5 HELX_P HELX_P10 10 GLY A 142 ? ILE A 154 ? GLY A 766 ILE A 778 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 62 SG ? ? A CYS 667 A CYS 686 1_555 ? ? ? ? ? ? ? 2.006 ? covale1 covale ? ? A GLY 39 C ? ? ? 1_555 A MSE 40 N ? ? A GLY 663 A MSE 664 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale ? ? A MSE 40 C ? ? ? 1_555 A GLN 41 N ? ? A MSE 664 A GLN 665 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A LEU 125 C ? ? ? 1_555 A MSE 126 N ? ? A LEU 749 A MSE 750 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale ? ? A MSE 126 C ? ? ? 1_555 A ALA 127 N ? ? A MSE 750 A ALA 751 1_555 ? ? ? ? ? ? ? 1.330 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 42 ? CYS A 43 ? ILE A 666 CYS A 667 A 2 PHE A 13 ? SER A 18 ? PHE A 637 SER A 642 A 3 SER A 66 ? LEU A 73 ? SER A 690 LEU A 697 A 4 LEU A 102 ? LEU A 106 ? LEU A 726 LEU A 730 A 5 LEU A 132 ? GLU A 133 ? LEU A 756 GLU A 757 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 43 ? N CYS A 667 O ALA A 15 ? O ALA A 639 A 2 3 O PHE A 13 ? O PHE A 637 N TYR A 67 ? N TYR A 691 A 3 4 O SER A 69 ? O SER A 693 N ILE A 103 ? N ILE A 727 A 4 5 N LEU A 106 ? N LEU A 730 O LEU A 132 ? O LEU A 756 # _database_PDB_matrix.entry_id 1FYV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1FYV _atom_sites.fract_transf_matrix[1][1] 0.009872 _atom_sites.fract_transf_matrix[1][2] 0.005699 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011399 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007252 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 625 625 ASN ASN A . n A 1 2 ILE 2 626 626 ILE ILE A . n A 1 3 PRO 3 627 627 PRO PRO A . n A 1 4 LEU 4 628 628 LEU LEU A . n A 1 5 GLU 5 629 629 GLU GLU A . n A 1 6 GLU 6 630 630 GLU GLU A . n A 1 7 LEU 7 631 631 LEU LEU A . n A 1 8 GLN 8 632 632 GLN GLN A . n A 1 9 ARG 9 633 633 ARG ARG A . n A 1 10 ASN 10 634 634 ASN ASN A . n A 1 11 LEU 11 635 635 LEU LEU A . n A 1 12 GLN 12 636 636 GLN GLN A . n A 1 13 PHE 13 637 637 PHE PHE A . n A 1 14 HIS 14 638 638 HIS HIS A . n A 1 15 ALA 15 639 639 ALA ALA A . n A 1 16 PHE 16 640 640 PHE PHE A . n A 1 17 ILE 17 641 641 ILE ILE A . n A 1 18 SER 18 642 642 SER SER A . n A 1 19 TYR 19 643 643 TYR TYR A . n A 1 20 SER 20 644 644 SER SER A . n A 1 21 GLY 21 645 645 GLY GLY A . n A 1 22 HIS 22 646 646 HIS HIS A . n A 1 23 ASP 23 647 647 ASP ASP A . n A 1 24 SER 24 648 648 SER SER A . n A 1 25 PHE 25 649 649 PHE PHE A . n A 1 26 TRP 26 650 650 TRP TRP A . n A 1 27 VAL 27 651 651 VAL VAL A . n A 1 28 LYS 28 652 652 LYS LYS A . n A 1 29 ASN 29 653 653 ASN ASN A . n A 1 30 GLU 30 654 654 GLU GLU A . n A 1 31 LEU 31 655 655 LEU LEU A . n A 1 32 LEU 32 656 656 LEU LEU A . n A 1 33 PRO 33 657 657 PRO PRO A . n A 1 34 ASN 34 658 658 ASN ASN A . n A 1 35 LEU 35 659 659 LEU LEU A . n A 1 36 GLU 36 660 660 GLU GLU A . n A 1 37 LYS 37 661 661 LYS LYS A . n A 1 38 GLU 38 662 662 GLU GLU A . n A 1 39 GLY 39 663 663 GLY GLY A . n A 1 40 MSE 40 664 664 MSE MSE A . n A 1 41 GLN 41 665 665 GLN GLN A . n A 1 42 ILE 42 666 666 ILE ILE A . n A 1 43 CYS 43 667 667 CYS CYS A . n A 1 44 LEU 44 668 668 LEU LEU A . n A 1 45 HIS 45 669 669 HIS HIS A . n A 1 46 GLU 46 670 670 GLU GLU A . n A 1 47 ARG 47 671 671 ARG ARG A . n A 1 48 ASN 48 672 672 ASN ASN A . n A 1 49 PHE 49 673 673 PHE PHE A . n A 1 50 VAL 50 674 674 VAL VAL A . n A 1 51 PRO 51 675 675 PRO PRO A . n A 1 52 GLY 52 676 676 GLY GLY A . n A 1 53 LYS 53 677 677 LYS LYS A . n A 1 54 SER 54 678 678 SER SER A . n A 1 55 ILE 55 679 679 ILE ILE A . n A 1 56 VAL 56 680 680 VAL VAL A . n A 1 57 GLU 57 681 681 GLU GLU A . n A 1 58 ASN 58 682 682 ASN ASN A . n A 1 59 ILE 59 683 683 ILE ILE A . n A 1 60 ILE 60 684 684 ILE ILE A . n A 1 61 THR 61 685 685 THR THR A . n A 1 62 CYS 62 686 686 CYS CYS A . n A 1 63 ILE 63 687 687 ILE ILE A . n A 1 64 GLU 64 688 688 GLU GLU A . n A 1 65 LYS 65 689 689 LYS LYS A . n A 1 66 SER 66 690 690 SER SER A . n A 1 67 TYR 67 691 691 TYR TYR A . n A 1 68 LYS 68 692 692 LYS LYS A . n A 1 69 SER 69 693 693 SER SER A . n A 1 70 ILE 70 694 694 ILE ILE A . n A 1 71 PHE 71 695 695 PHE PHE A . n A 1 72 VAL 72 696 696 VAL VAL A . n A 1 73 LEU 73 697 697 LEU LEU A . n A 1 74 SER 74 698 698 SER SER A . n A 1 75 PRO 75 699 699 PRO PRO A . n A 1 76 ASN 76 700 700 ASN ASN A . n A 1 77 PHE 77 701 701 PHE PHE A . n A 1 78 VAL 78 702 702 VAL VAL A . n A 1 79 GLN 79 703 703 GLN GLN A . n A 1 80 SER 80 704 704 SER SER A . n A 1 81 GLU 81 705 705 GLU GLU A . n A 1 82 TRP 82 706 706 TRP TRP A . n A 1 83 CYS 83 707 707 CYS CYS A . n A 1 84 HIS 84 708 708 HIS HIS A . n A 1 85 TYR 85 709 709 TYR TYR A . n A 1 86 GLU 86 710 710 GLU GLU A . n A 1 87 LEU 87 711 711 LEU LEU A . n A 1 88 TYR 88 712 712 TYR TYR A . n A 1 89 PHE 89 713 713 PHE PHE A . n A 1 90 ALA 90 714 714 ALA ALA A . n A 1 91 HIS 91 715 715 HIS HIS A . n A 1 92 HIS 92 716 716 HIS HIS A . n A 1 93 ASN 93 717 717 ASN ASN A . n A 1 94 LEU 94 718 718 LEU LEU A . n A 1 95 PHE 95 719 719 PHE PHE A . n A 1 96 HIS 96 720 720 HIS HIS A . n A 1 97 GLU 97 721 721 GLU GLU A . n A 1 98 GLY 98 722 722 GLY GLY A . n A 1 99 SER 99 723 723 SER SER A . n A 1 100 ASN 100 724 724 ASN ASN A . n A 1 101 SER 101 725 725 SER SER A . n A 1 102 LEU 102 726 726 LEU LEU A . n A 1 103 ILE 103 727 727 ILE ILE A . n A 1 104 LEU 104 728 728 LEU LEU A . n A 1 105 ILE 105 729 729 ILE ILE A . n A 1 106 LEU 106 730 730 LEU LEU A . n A 1 107 LEU 107 731 731 LEU LEU A . n A 1 108 GLU 108 732 732 GLU GLU A . n A 1 109 PRO 109 733 733 PRO PRO A . n A 1 110 ILE 110 734 734 ILE ILE A . n A 1 111 PRO 111 735 735 PRO PRO A . n A 1 112 GLN 112 736 736 GLN GLN A . n A 1 113 TYR 113 737 737 TYR TYR A . n A 1 114 SER 114 738 738 SER SER A . n A 1 115 ILE 115 739 739 ILE ILE A . n A 1 116 PRO 116 740 740 PRO PRO A . n A 1 117 SER 117 741 741 SER SER A . n A 1 118 SER 118 742 742 SER SER A . n A 1 119 TYR 119 743 743 TYR TYR A . n A 1 120 HIS 120 744 744 HIS HIS A . n A 1 121 LYS 121 745 745 LYS LYS A . n A 1 122 LEU 122 746 746 LEU LEU A . n A 1 123 LYS 123 747 747 LYS LYS A . n A 1 124 SER 124 748 748 SER SER A . n A 1 125 LEU 125 749 749 LEU LEU A . n A 1 126 MSE 126 750 750 MSE MSE A . n A 1 127 ALA 127 751 751 ALA ALA A . n A 1 128 ARG 128 752 752 ARG ARG A . n A 1 129 ARG 129 753 753 ARG ARG A . n A 1 130 THR 130 754 754 THR THR A . n A 1 131 TYR 131 755 755 TYR TYR A . n A 1 132 LEU 132 756 756 LEU LEU A . n A 1 133 GLU 133 757 757 GLU GLU A . n A 1 134 TRP 134 758 758 TRP TRP A . n A 1 135 PRO 135 759 759 PRO PRO A . n A 1 136 LYS 136 760 760 LYS LYS A . n A 1 137 GLU 137 761 761 GLU GLU A . n A 1 138 LYS 138 762 762 LYS LYS A . n A 1 139 SER 139 763 763 SER SER A . n A 1 140 LYS 140 764 764 LYS LYS A . n A 1 141 ARG 141 765 765 ARG ARG A . n A 1 142 GLY 142 766 766 GLY GLY A . n A 1 143 LEU 143 767 767 LEU LEU A . n A 1 144 PHE 144 768 768 PHE PHE A . n A 1 145 TRP 145 769 769 TRP TRP A . n A 1 146 ALA 146 770 770 ALA ALA A . n A 1 147 ASN 147 771 771 ASN ASN A . n A 1 148 LEU 148 772 772 LEU LEU A . n A 1 149 ARG 149 773 773 ARG ARG A . n A 1 150 ALA 150 774 774 ALA ALA A . n A 1 151 ALA 151 775 775 ALA ALA A . n A 1 152 ILE 152 776 776 ILE ILE A . n A 1 153 ASN 153 777 777 ASN ASN A . n A 1 154 ILE 154 778 778 ILE ILE A . n A 1 155 LYS 155 779 779 LYS LYS A . n A 1 156 LEU 156 780 780 LEU LEU A . n A 1 157 THR 157 781 781 THR THR A . n A 1 158 GLU 158 782 782 GLU GLU A . n A 1 159 GLN 159 783 783 GLN GLN A . n A 1 160 ALA 160 784 784 ALA ALA A . n A 1 161 LYS 161 785 785 LYS LYS A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 40 A MSE 664 ? MET SELENOMETHIONINE 2 A MSE 126 A MSE 750 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 4 'Structure model' pdbx_unobs_or_zero_occ_residues # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 4 'Structure model' '_exptl_crystal_grow.temp' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MADSYS phasing . ? 3 CNS refinement . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 626 ? ? -35.99 127.24 2 1 LEU A 628 ? ? -39.43 -30.01 3 1 GLU A 630 ? ? -56.68 16.59 4 1 GLN A 632 ? ? -47.85 -70.81 5 1 ASN A 634 ? ? -105.00 61.72 6 1 HIS A 669 ? ? -51.82 -6.52 7 1 ASN A 672 ? ? -93.65 32.96 8 1 LEU A 718 ? ? -133.25 -33.96 9 1 HIS A 720 ? ? -58.97 174.15 10 1 SER A 723 ? ? -65.99 -179.01 11 1 ARG A 752 ? ? -52.19 -9.31 12 1 ARG A 753 ? ? 42.28 72.93 13 1 ALA A 784 ? ? 55.91 -98.74 #