HEADER OXIDOREDUCTASE 10-OCT-00 1G11 TITLE TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN D, T4MOD; COMPND 5 EC: 1.14.13.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 3 ORGANISM_TAXID: 300; SOURCE 4 STRAIN: KR1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS AROMATIC HYDROCARBON CATABOLISM, OXIDOREDUCTASE, MONOOXYGENASE, KEYWDS 2 TOLUENE OXIDATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.HEMMI,J.M.STUDTS,Y.K.CHAE,J.SONG,J.L.MARKLEY,B.G.FOX REVDAT 4 23-FEB-22 1G11 1 REMARK REVDAT 3 24-FEB-09 1G11 1 VERSN REVDAT 2 11-OCT-05 1G11 1 REMARK REVDAT 1 09-MAY-01 1G11 0 JRNL AUTH H.HEMMI,J.M.STUDTS,Y.K.CHAE,J.SONG,J.L.MARKLEY,B.G.FOX JRNL TITL SOLUTION STRUCTURE OF THE TOLUENE 4-MONOOXYGENASE EFFECTOR JRNL TITL 2 PROTEIN (T4MOD). JRNL REF BIOCHEMISTRY V. 40 3512 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11297417 JRNL DOI 10.1021/BI0013703 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HEMMI,J.M.STUDTS,Y.K.CHAE,B.G.FOX,J.L.MARKLEY REMARK 1 TITL ASSIGNMENT OF 1H, 13C AND 15N NMR SIGNALS IN THE TOLUENE REMARK 1 TITL 2 4-MONOOXYGENASE EFFECTOR PROTEIN REMARK 1 REF J.BIOMOL.NMR V. 16 359 2000 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008333115661 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.M.STUDTS,B.G.FOX REMARK 1 TITL APPLICATION OF FED-BATCH FERMENTATION TO THE PREPARATION OF REMARK 1 TITL 2 ISOTOPICALY LABELED OR SELENOMETHIONYL-LABELED PROTEINS REMARK 1 REF PROTEIN EXPR.PURIF. V. 16 109 1999 REMARK 1 REFN ISSN 1046-5928 REMARK 1 DOI 10.1006/PREP.1999.1067 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.XIA,J.D.PIKUS,W.XIA,K.MCCLAY,R.J.STEFFAN,Y.K.CHAE, REMARK 1 AUTH 2 M.M.WESTLER,J.L.MARKLEY,B.G.FOX REMARK 1 TITL DETECTION AND CLASSIFICATION OF HYPERFINE-SHIFTED 1H, 2H, REMARK 1 TITL 2 AND 15N RESONANCES OF THE RIESKE FERREDOXIN COMPONENT FROM REMARK 1 TITL 3 TOLUENE 4-MONOOXYGENASE REMARK 1 REF BIOCHEMISTRY V. 38 727 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI981851A REMARK 1 REFERENCE 4 REMARK 1 AUTH J.D.PIKUS,J.M STUDTS,C.ACHIM,K.E.KAUFFMANN,E.MUNCK, REMARK 1 AUTH 2 R.J.STEFFAN,K.MCCLAY,B.G.FOX REMARK 1 TITL RECOMBINANT TOLUENE-4-MONOOXYGENASE: CATALYTIC AND MOSSBAUER REMARK 1 TITL 2 STUDIES OF THE PURIFIED DIIRON AND RIESKE COMPONENTS OF A REMARK 1 TITL 3 FOUR-PROTEIN COMPLEX REMARK 1 REF BIOCHEMISTRY V. 35 9106 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI960456M REMARK 1 REFERENCE 5 REMARK 1 AUTH G.M.WHITED,D.T.GIBSON REMARK 1 TITL TOLUENE-4-MONOOXYGENASE, A THREE COMPONENT ENZYME SYSTEM REMARK 1 TITL 2 THAT CATALYZES THE OXIDATION OF TOLUENE TO P-CRESOL IN REMARK 1 TITL 3 PSEUDOMONAS MENDOCINA KR1 REMARK 1 REF J.BACTERIOL. V. 173 3010 1991 REMARK 1 REFN ISSN 0021-9193 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843, DYANA 1.5 REMARK 3 AUTHORS : BRUNGER (X-PLOR), GUNTER, MUMENTHALER, WUTRICH REMARK 3 (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1339 REMARK 3 INTERPROTON RESTRAINTS. THESE COMPRISED 367 INTRARESIDUE, 424 REMARK 3 SEQUENTIAL, 195 MEDIUM-RANGE, AND 273 LONG-RANGE NOE DISTANCE REMARK 3 RESTRAINTS AND 128 DIHEDRAL ANGLE RESTRAINTS (78 PSI, 26 PHI, REMARK 3 AND 24 CHI), AND 80 HYDROGEN BONDING RESTRAINTS. REMARK 4 REMARK 4 1G11 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000012099. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 67 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-13C,U-15N] T4MOD; 3.0 REMARK 210 MM [NA] T4MOD REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-15N REMARK 210 HSQC,HNCA,HN(CO)CA,C(CO)NH,HNCACB,HCCH-COSY,HCCH-TOCSY,2D_1H- REMARK 210 NOESY,2D_1H-TOCSY,CT-13C-HSQC,3D_NOESY-CT-HSCQ,3D_TOCSY-CT-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: 123 1H-15N CROSS PEAKS WERE ASSIGNED OUT OF THE EXPECTED REMARK 210 129 CROSS PEAKS (95% COMPLETE). 386 BACKBONE RESONANCES WERE REMARK 210 ASSIGNED OUT OF THE EXPECTED 400 RESONANCES (97% COMPLETE). 789 REMARK 210 SIDECHAIN RESONANCES WERE ASSIGNED OUT OF THE EXPECTED 901 REMARK 210 RESONANCES (88% COMPLETE). ARG SIDECHAIN ATOMS ACCOUNT FOR 51 OF REMARK 210 112 UNASSIGNED SIDECHAIN ATOMS (51%). REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 33 H THR A 59 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 7 44.34 -146.80 REMARK 500 1 ASN A 11 -74.26 -139.57 REMARK 500 1 LYS A 37 46.13 -85.02 REMARK 500 1 GLU A 38 49.54 179.49 REMARK 500 1 ARG A 45 -47.53 162.66 REMARK 500 1 ARG A 60 33.18 -88.05 REMARK 500 1 PHE A 71 -157.01 -160.16 REMARK 500 1 ALA A 81 -52.24 -122.47 REMARK 500 1 ALA A 84 -45.14 -131.13 REMARK 500 1 ASP A 92 59.75 -149.72 REMARK 500 1 LYS A 100 -79.32 -78.32 REMARK 500 2 THR A 2 124.55 61.76 REMARK 500 2 ASP A 5 110.83 -166.49 REMARK 500 2 ALA A 7 65.86 -154.18 REMARK 500 2 LEU A 8 -63.30 -137.49 REMARK 500 2 HIS A 9 175.15 -57.08 REMARK 500 2 ASN A 11 -48.59 -139.31 REMARK 500 2 ASN A 12 147.50 179.94 REMARK 500 2 ARG A 18 -167.14 -78.88 REMARK 500 2 ASP A 21 -147.55 -179.61 REMARK 500 2 GLU A 38 43.82 179.08 REMARK 500 2 ARG A 44 -71.18 -81.16 REMARK 500 2 ARG A 45 -42.62 168.04 REMARK 500 2 GLU A 55 87.95 -178.46 REMARK 500 2 ARG A 60 45.46 -84.18 REMARK 500 2 PHE A 71 -159.07 -160.23 REMARK 500 2 ALA A 81 -66.27 -128.64 REMARK 500 2 ASP A 92 61.77 -151.17 REMARK 500 2 LYS A 100 -65.59 -103.85 REMARK 500 3 ALA A 7 101.11 -175.57 REMARK 500 3 HIS A 9 162.13 172.13 REMARK 500 3 ASN A 11 -88.93 -149.10 REMARK 500 3 LYS A 37 39.66 -88.27 REMARK 500 3 GLU A 38 37.64 179.40 REMARK 500 3 ARG A 45 -55.26 161.16 REMARK 500 3 THR A 59 19.40 -149.73 REMARK 500 3 ARG A 60 46.21 -87.55 REMARK 500 3 PHE A 71 -157.73 -160.15 REMARK 500 3 ASN A 72 -169.83 -163.58 REMARK 500 3 LEU A 80 80.44 -159.43 REMARK 500 3 ASP A 92 64.15 -153.54 REMARK 500 3 THR A 101 140.78 -37.02 REMARK 500 4 THR A 2 97.66 58.30 REMARK 500 4 ALA A 7 48.96 -109.20 REMARK 500 4 HIS A 9 169.38 172.96 REMARK 500 4 ASN A 11 -69.74 -161.68 REMARK 500 4 ASN A 12 146.69 -172.90 REMARK 500 4 ASP A 21 130.40 179.96 REMARK 500 4 GLU A 38 51.23 178.95 REMARK 500 4 ARG A 45 -50.43 160.16 REMARK 500 REMARK 500 THIS ENTRY HAS 348 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4560 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS REMARK 900 RELATED ID: 1G10 RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE DBREF 1G11 A 1 102 UNP Q00459 TMOD_PSEME 1 102 SEQRES 1 A 102 SER THR LEU ALA ASP GLN ALA LEU HIS ASN ASN ASN VAL SEQRES 2 A 102 GLY PRO ILE ILE ARG ALA GLY ASP LEU VAL GLU PRO VAL SEQRES 3 A 102 ILE GLU THR ALA GLU ILE ASP ASN PRO GLY LYS GLU ILE SEQRES 4 A 102 THR VAL GLU ASP ARG ARG ALA TYR VAL ARG ILE ALA ALA SEQRES 5 A 102 GLU GLY GLU LEU ILE LEU THR ARG LYS THR LEU GLU GLU SEQRES 6 A 102 GLN LEU GLY ARG PRO PHE ASN MET GLN GLU LEU GLU ILE SEQRES 7 A 102 ASN LEU ALA SER PHE ALA GLY GLN ILE GLN ALA ASP GLU SEQRES 8 A 102 ASP GLN ILE ARG PHE TYR PHE ASP LYS THR MET HELIX 1 1 LEU A 22 ASP A 33 1 12 HELIX 2 2 ARG A 60 LEU A 67 1 8 HELIX 3 3 MET A 73 ASN A 79 1 7 SHEET 1 A 3 ILE A 16 ARG A 18 0 SHEET 2 A 3 TYR A 47 ALA A 51 -1 N VAL A 48 O ILE A 17 SHEET 3 A 3 THR A 40 ASP A 43 -1 O THR A 40 N ALA A 51 SHEET 1 B 3 LEU A 56 LEU A 58 0 SHEET 2 B 3 GLN A 93 TYR A 97 -1 N ILE A 94 O LEU A 58 SHEET 3 B 3 GLN A 86 ASP A 90 -1 N GLN A 86 O TYR A 97 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1