HEADER IMMUNE SYSTEM, MEMBRANE PROTEIN 13-OCT-00 1G1Q TITLE CRYSTAL STRUCTURE OF P-SELECTIN LECTIN/EGF DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-SELECTIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LECTIN/EGF DOMAINS; COMPND 5 SYNONYM: GRANULE MEMBRANE PROTEIN 140, GMP-140, PADGEM, COMPND 6 CD62P, LEUKOCYTE-ENDOTHELIAL CELL ADHESION MOLECULE 3, COMPND 7 LECAM3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL: OVARY [CHO] CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LECTIN, EGF, ADHESION MOLECULE, IMMUNE SYSTEM, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.S.SOMERS,R.T.CAMPHAUSEN REVDAT 3 24-FEB-09 1G1Q 1 VERSN REVDAT 2 01-APR-03 1G1Q 1 JRNL REVDAT 1 13-OCT-01 1G1Q 0 JRNL AUTH W.S.SOMERS,J.TANG,G.D.SHAW,R.T.CAMPHAUSEN JRNL TITL INSIGHTS INTO THE MOLECULAR BASIS OF LEUKOCYTE JRNL TITL 2 TETHERING AND ROLLING REVEALED BY STRUCTURES OF P- JRNL TITL 3 AND E-SELECTIN BOUND TO SLE(X) AND PSGL-1. JRNL REF CELL(CAMBRIDGE,MASS.) V. 103 467 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 11081633 JRNL DOI 10.1016/S0092-8674(00)00138-0 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 32570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1628 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G1Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-00. REMARK 100 THE RCSB ID CODE IS RCSB012124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : YALE/MSC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 7.380 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.38 REMARK 200 R MERGE FOR SHELL (I) : 0.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, NACL, CACL2, 2-METHYL-2, REMARK 280 4-PENTANEDIOL, PEG 6000, PH 8.5, VAPOR DIFFUSION, HANGING DROP REMARK 280 AT 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.41500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 161 REMARK 465 LYS A 162 REMARK 465 ASP B 161 REMARK 465 LYS B 162 REMARK 465 ASP C 160 REMARK 465 ASP C 161 REMARK 465 LYS C 162 REMARK 465 ASP D 161 REMARK 465 LYS D 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 ASP A 160 CG OD1 OD2 REMARK 470 ASP B 159 CG OD1 OD2 REMARK 470 ASP B 160 CG OD1 OD2 REMARK 470 LYS C 17 CG CD CE NZ REMARK 470 ASN C 57 CG OD1 ND2 REMARK 470 ASP C 159 CG OD1 OD2 REMARK 470 ASP D 159 CG OD1 OD2 REMARK 470 ASP D 160 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 19 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 23 -139.05 -134.23 REMARK 500 TYR A 48 -169.97 68.78 REMARK 500 ASN A 57 -111.15 55.03 REMARK 500 ASN A 75 47.85 -142.65 REMARK 500 ALA A 100 65.89 -150.22 REMARK 500 SER A 128 25.87 49.65 REMARK 500 ASN A 139 -158.69 -173.35 REMARK 500 TYR B 23 -135.99 -124.44 REMARK 500 THR B 24 -62.00 -97.22 REMARK 500 TYR B 48 -164.61 62.27 REMARK 500 ASN B 57 -84.57 62.48 REMARK 500 LYS B 58 14.87 -148.88 REMARK 500 ASN B 75 38.90 -146.54 REMARK 500 ASN B 79 3.30 82.20 REMARK 500 SER B 128 18.93 56.88 REMARK 500 ASN B 139 -151.88 -165.61 REMARK 500 TYR C 23 -140.54 -122.07 REMARK 500 ASP C 25 -171.14 -177.68 REMARK 500 VAL C 27 131.76 -35.82 REMARK 500 TYR C 48 -160.57 62.55 REMARK 500 ASN C 56 119.44 174.35 REMARK 500 LYS C 58 6.22 57.99 REMARK 500 ASN C 75 44.12 -143.06 REMARK 500 ASN C 79 30.56 74.18 REMARK 500 ARG C 85 171.21 -58.92 REMARK 500 ASN C 87 19.50 59.82 REMARK 500 LYS C 96 19.95 58.78 REMARK 500 SER C 99 -63.42 -96.20 REMARK 500 LYS C 129 25.22 49.15 REMARK 500 ASN C 139 -149.84 -151.40 REMARK 500 SER D 11 -170.64 -63.30 REMARK 500 TYR D 23 -140.88 -146.44 REMARK 500 THR D 24 -62.23 -92.48 REMARK 500 ASP D 25 -163.88 -165.92 REMARK 500 TYR D 48 -172.80 76.34 REMARK 500 ASN D 56 -110.43 -86.79 REMARK 500 ASN D 57 -75.23 -77.63 REMARK 500 LYS D 58 26.74 -141.12 REMARK 500 ASN D 75 44.06 -144.72 REMARK 500 ASN D 79 -25.20 87.55 REMARK 500 ASN D 87 32.59 70.84 REMARK 500 TYR D 94 66.50 -66.21 REMARK 500 ASN D 139 -155.06 171.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 94 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASN A 105 OD1 77.1 REMARK 620 3 HOH A 810 O 80.1 81.0 REMARK 620 4 ASN A 82 OD1 70.9 146.3 83.2 REMARK 620 5 ASP A 106 O 132.4 80.2 136.3 130.0 REMARK 620 6 ASP A 106 OD1 73.7 99.5 152.9 81.7 69.6 REMARK 620 7 HOH A 857 O 153.4 118.3 81.2 88.2 73.7 120.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 82 OD1 REMARK 620 2 HOH B 833 O 68.4 REMARK 620 3 ASP B 106 O 135.5 92.5 REMARK 620 4 ASP B 106 OD1 77.1 112.3 73.9 REMARK 620 5 HOH B 826 O 81.9 72.3 131.6 154.5 REMARK 620 6 GLU B 80 OE1 71.8 131.1 136.3 84.4 75.3 REMARK 620 7 ASN B 105 OD1 149.2 132.3 72.7 106.7 84.3 78.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 105 OD1 REMARK 620 2 ASP C 106 O 92.9 REMARK 620 3 ASN C 82 OD1 136.5 128.1 REMARK 620 4 ASP C 106 OD1 109.8 62.7 82.2 REMARK 620 5 GLU C 80 OE1 58.9 129.2 81.3 86.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 106 OD1 REMARK 620 2 GLU D 80 OE2 89.6 REMARK 620 3 ASN D 82 OD1 66.6 69.0 REMARK 620 4 ASN D 105 OD1 107.9 77.3 145.6 REMARK 620 5 ASP D 106 O 62.5 146.4 111.3 93.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 801 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 802 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 803 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 804 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD C 805 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G1R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P-SELECTIN LECTIN/EGF DOMAINS REMARK 900 COMPLEXED WITH SLEX REMARK 900 RELATED ID: 1G1S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P-SELECTIN LECTIN/EGF DOMAINS REMARK 900 RELATED ID: 1G1T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E-SELECTIN DBREF 1G1Q A 1 158 UNP P16109 LYAM3_HUMAN 42 199 DBREF 1G1Q B 1 158 UNP P16109 LYAM3_HUMAN 42 199 DBREF 1G1Q C 1 158 UNP P16109 LYAM3_HUMAN 42 199 DBREF 1G1Q D 1 158 UNP P16109 LYAM3_HUMAN 42 199 SEQADV 1G1Q ASP A 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1Q ASP A 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP A 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP A 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q LYS A 162 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP B 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1Q ASP B 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP B 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP B 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q LYS B 162 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP C 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1Q ASP C 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP C 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP C 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q LYS C 162 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP D 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1Q ASP D 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP D 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q ASP D 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1Q LYS D 162 UNP P16109 CLONING ARTIFACT SEQRES 1 A 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 A 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 A 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 A 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 A 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 A 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 A 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 A 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 A 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 A 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 A 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 A 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 A 162 ARG ASP ASP ASP ASP LYS SEQRES 1 B 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 B 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 B 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 B 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 B 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 B 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 B 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 B 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 B 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 B 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 B 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 B 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 B 162 ARG ASP ASP ASP ASP LYS SEQRES 1 C 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 C 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 C 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 C 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 C 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 C 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 C 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 C 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 C 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 C 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 C 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 C 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 C 162 ARG ASP ASP ASP ASP LYS SEQRES 1 D 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 D 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 D 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 D 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 D 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 D 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 D 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 D 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 D 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 D 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 D 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 D 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 D 162 ARG ASP ASP ASP ASP LYS HET CA A 801 1 HET CA B 802 1 HET CA C 803 1 HET CA D 804 1 HET MRD C 805 8 HET MRD A 806 8 HETNAM CA CALCIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 5 CA 4(CA 2+) FORMUL 9 MRD 2(C6 H14 O2) FORMUL 11 HOH *134(H2 O) HELIX 1 1 SER A 11 TYR A 23 1 13 HELIX 2 2 ASN A 31 LEU A 42 1 12 HELIX 3 3 MET A 125 LYS A 129 5 5 HELIX 4 4 SER B 11 TYR B 23 1 13 HELIX 5 5 ASN B 31 LEU B 42 1 12 HELIX 6 6 MET B 125 LYS B 129 5 5 HELIX 7 7 SER C 11 TYR C 23 1 13 HELIX 8 8 ASN C 31 LEU C 42 1 12 HELIX 9 9 MET C 125 LYS C 129 5 5 HELIX 10 10 SER D 11 TYR D 23 1 13 HELIX 11 11 ASN D 31 LEU D 42 1 12 HELIX 12 12 MET D 125 LYS D 129 5 5 SHEET 1 A 3 THR A 2 TYR A 5 0 SHEET 2 A 3 HIS A 114 THR A 119 -1 N CYS A 117 O HIS A 4 SHEET 3 A 3 ASP A 25 LEU A 26 -1 O ASP A 25 N TYR A 118 SHEET 1 B 5 THR A 2 TYR A 5 0 SHEET 2 B 5 HIS A 114 THR A 119 -1 N CYS A 117 O HIS A 4 SHEET 3 B 5 TYR A 49 ILE A 51 1 N TRP A 50 O HIS A 114 SHEET 4 B 5 CYS A 90 ILE A 93 -1 O VAL A 91 N ILE A 51 SHEET 5 B 5 TRP A 104 GLU A 107 -1 O ASN A 105 N GLU A 92 SHEET 1 C 2 ILE A 53 ASN A 56 0 SHEET 2 C 2 THR A 59 TRP A 62 -1 N THR A 59 O ASN A 56 SHEET 1 D 2 GLY A 131 THR A 136 0 SHEET 2 D 2 ASN A 139 CYS A 144 -1 O ASN A 139 N THR A 136 SHEET 1 E 2 PHE A 148 TYR A 149 0 SHEET 2 E 2 TYR A 155 VAL A 156 -1 N TYR A 155 O TYR A 149 SHEET 1 F 3 THR B 2 TYR B 5 0 SHEET 2 F 3 HIS B 114 THR B 119 -1 N CYS B 117 O HIS B 4 SHEET 3 F 3 ASP B 25 LEU B 26 -1 O ASP B 25 N TYR B 118 SHEET 1 G 5 THR B 2 TYR B 5 0 SHEET 2 G 5 HIS B 114 THR B 119 -1 N CYS B 117 O HIS B 4 SHEET 3 G 5 TYR B 49 TRP B 50 1 N TRP B 50 O HIS B 114 SHEET 4 G 5 CYS B 90 ILE B 93 -1 N ILE B 93 O TYR B 49 SHEET 5 G 5 TRP B 104 GLU B 107 -1 O ASN B 105 N GLU B 92 SHEET 1 H 2 ILE B 53 ASN B 56 0 SHEET 2 H 2 THR B 59 TRP B 62 -1 N THR B 59 O ASN B 56 SHEET 1 I 2 GLY B 131 THR B 136 0 SHEET 2 I 2 ASN B 139 CYS B 144 -1 O ASN B 139 N THR B 136 SHEET 1 J 2 PHE B 148 TYR B 149 0 SHEET 2 J 2 TYR B 155 VAL B 156 -1 N TYR B 155 O TYR B 149 SHEET 1 K 3 THR C 2 TYR C 10 0 SHEET 2 K 3 LYS C 113 THR C 119 -1 O LYS C 113 N TYR C 10 SHEET 3 K 3 ASP C 25 LEU C 26 -1 O ASP C 25 N TYR C 118 SHEET 1 L 5 THR C 2 TYR C 10 0 SHEET 2 L 5 LYS C 113 THR C 119 -1 O LYS C 113 N TYR C 10 SHEET 3 L 5 TYR C 49 ILE C 51 1 N TRP C 50 O HIS C 114 SHEET 4 L 5 CYS C 90 ILE C 93 -1 O VAL C 91 N ILE C 51 SHEET 5 L 5 TRP C 104 GLU C 107 -1 O ASN C 105 N GLU C 92 SHEET 1 M 3 ILE C 53 ARG C 54 0 SHEET 2 M 3 THR C 61 TRP C 62 -1 N THR C 61 O ARG C 54 SHEET 3 M 3 LYS C 67 ALA C 68 -1 O LYS C 67 N TRP C 62 SHEET 1 N 2 GLY C 131 THR C 136 0 SHEET 2 N 2 ASN C 139 CYS C 144 -1 O ASN C 139 N THR C 136 SHEET 1 O 2 PHE C 148 TYR C 149 0 SHEET 2 O 2 TYR C 155 VAL C 156 -1 O TYR C 155 N TYR C 149 SHEET 1 P 3 THR D 2 TYR D 5 0 SHEET 2 P 3 HIS D 114 THR D 119 -1 N CYS D 117 O HIS D 4 SHEET 3 P 3 ASP D 25 LEU D 26 -1 O ASP D 25 N TYR D 118 SHEET 1 Q 5 THR D 2 TYR D 5 0 SHEET 2 Q 5 HIS D 114 THR D 119 -1 N CYS D 117 O HIS D 4 SHEET 3 Q 5 TYR D 49 TRP D 50 1 N TRP D 50 O HIS D 114 SHEET 4 Q 5 CYS D 90 ILE D 93 -1 N ILE D 93 O TYR D 49 SHEET 5 Q 5 TRP D 104 GLU D 107 -1 O ASN D 105 N GLU D 92 SHEET 1 R 2 ILE D 53 LYS D 55 0 SHEET 2 R 2 TRP D 60 TRP D 62 -1 N THR D 61 O ARG D 54 SHEET 1 S 2 GLY D 131 THR D 136 0 SHEET 2 S 2 ASN D 139 CYS D 144 -1 O ASN D 139 N THR D 136 SHEET 1 T 2 PHE D 148 TYR D 149 0 SHEET 2 T 2 TYR D 155 VAL D 156 -1 N TYR D 155 O TYR D 149 SSBOND 1 CYS A 19 CYS A 117 1555 1555 2.04 SSBOND 2 CYS A 90 CYS A 109 1555 1555 2.02 SSBOND 3 CYS A 122 CYS A 133 1555 1555 2.03 SSBOND 4 CYS A 127 CYS A 142 1555 1555 2.04 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.05 SSBOND 6 CYS B 19 CYS B 117 1555 1555 2.06 SSBOND 7 CYS B 90 CYS B 109 1555 1555 2.03 SSBOND 8 CYS B 122 CYS B 133 1555 1555 2.03 SSBOND 9 CYS B 127 CYS B 142 1555 1555 2.04 SSBOND 10 CYS B 144 CYS B 153 1555 1555 2.04 SSBOND 11 CYS C 19 CYS C 117 1555 1555 2.03 SSBOND 12 CYS C 90 CYS C 109 1555 1555 2.04 SSBOND 13 CYS C 122 CYS C 133 1555 1555 2.03 SSBOND 14 CYS C 127 CYS C 142 1555 1555 2.04 SSBOND 15 CYS C 144 CYS C 153 1555 1555 2.04 SSBOND 16 CYS D 19 CYS D 117 1555 1555 2.03 SSBOND 17 CYS D 90 CYS D 109 1555 1555 2.03 SSBOND 18 CYS D 122 CYS D 133 1555 1555 2.04 SSBOND 19 CYS D 127 CYS D 142 1555 1555 2.03 SSBOND 20 CYS D 144 CYS D 153 1555 1555 2.05 LINK CA CA A 801 OE1 GLU A 80 1555 1555 2.60 LINK CA CA A 801 OD1 ASN A 105 1555 1555 2.32 LINK CA CA A 801 O HOH A 810 1555 1555 2.28 LINK CA CA A 801 OD1 ASN A 82 1555 1555 2.39 LINK CA CA A 801 O ASP A 106 1555 1555 2.46 LINK CA CA A 801 OD1 ASP A 106 1555 1555 2.16 LINK CA CA A 801 O HOH A 857 1555 1555 2.32 LINK CA CA B 802 OD1 ASN B 82 1555 1555 2.34 LINK CA CA B 802 O HOH B 833 1555 1555 2.36 LINK CA CA B 802 O ASP B 106 1555 1555 2.50 LINK CA CA B 802 OD1 ASP B 106 1555 1555 2.33 LINK CA CA B 802 O HOH B 826 1555 1555 2.49 LINK CA CA B 802 OE1 GLU B 80 1555 1555 2.68 LINK CA CA B 802 OD1 ASN B 105 1555 1555 2.29 LINK CA CA C 803 OD1 ASN C 105 1555 1555 2.62 LINK CA CA C 803 O ASP C 106 1555 1555 2.52 LINK CA CA C 803 OD1 ASN C 82 1555 1555 2.55 LINK CA CA C 803 OD1 ASP C 106 1555 1555 2.26 LINK CA CA C 803 OE1 GLU C 80 1555 1555 2.37 LINK CA CA D 804 OD1 ASP D 106 1555 1555 2.31 LINK CA CA D 804 OE2 GLU D 80 1555 1555 2.72 LINK CA CA D 804 OD1 ASN D 82 1555 1555 2.14 LINK CA CA D 804 OD1 ASN D 105 1555 1555 2.08 LINK CA CA D 804 O ASP D 106 1555 1555 2.59 CISPEP 1 GLU A 80 PRO A 81 0 -0.54 CISPEP 2 GLU B 80 PRO B 81 0 -0.17 CISPEP 3 GLU C 80 PRO C 81 0 -0.52 CISPEP 4 GLU D 80 PRO D 81 0 -0.12 SITE 1 AC1 6 GLU A 80 ASN A 82 ASN A 105 ASP A 106 SITE 2 AC1 6 HOH A 810 HOH A 857 SITE 1 AC2 6 GLU B 80 ASN B 82 ASN B 105 ASP B 106 SITE 2 AC2 6 HOH B 826 HOH B 833 SITE 1 AC3 4 GLU C 80 ASN C 82 ASN C 105 ASP C 106 SITE 1 AC4 4 GLU D 80 ASN D 82 ASN D 105 ASP D 106 SITE 1 AC5 5 THR C 2 TYR C 3 TYR C 37 GLY C 138 SITE 2 AC5 5 HOH C 814 SITE 1 AC6 5 THR A 2 TYR A 3 TYR A 37 ILE A 137 SITE 2 AC6 5 GLY A 138 CRYST1 81.000 60.830 91.440 90.00 103.58 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012346 0.000000 0.002982 0.00000 SCALE2 0.000000 0.016439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011251 0.00000