HEADER IMMUNE SYSTEM, MEMBRANE PROTEIN 13-OCT-00 1G1R TITLE CRYSTAL STRUCTURE OF P-SELECTIN LECTIN/EGF DOMAINS COMPLEXED WITH SLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-SELECTIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LECTIN/EGF DOMAINS; COMPND 5 SYNONYM: GRANULE MEMBRANE PROTEIN 140, GMP-140, PADGEM, CD62P, COMPND 6 LEUKOCYTE-ENDOTHELIAL CELL ADHESION MOLECULE 3, LECAM3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL: OVARY [CHO] CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LECTIN, EGF, ADHESION MOLECULE, SLEX, IMMUNE SYSTEM, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.S.SOMERS,R.T.CAMPHAUSEN REVDAT 5 16-OCT-24 1G1R 1 HETSYN REVDAT 4 29-JUL-20 1G1R 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 24-FEB-09 1G1R 1 VERSN REVDAT 2 01-APR-03 1G1R 1 JRNL REVDAT 1 13-OCT-01 1G1R 0 JRNL AUTH W.S.SOMERS,J.TANG,G.D.SHAW,R.T.CAMPHAUSEN JRNL TITL INSIGHTS INTO THE MOLECULAR BASIS OF LEUKOCYTE TETHERING AND JRNL TITL 2 ROLLING REVEALED BY STRUCTURES OF P- AND E-SELECTIN BOUND TO JRNL TITL 3 SLE(X) AND PSGL-1. JRNL REF CELL(CAMBRIDGE,MASS.) V. 103 467 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 11081633 JRNL DOI 10.1016/S0092-8674(00)00138-0 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 583 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 191 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000012125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : YALE/MSC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11667 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 14.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.790 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.79 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, NACL, CACL2, 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, PEG 6000, PH 8.5, VAPOR DIFFUSION, HANGING DROP AT REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.26000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 161 REMARK 465 LYS A 162 REMARK 465 ASP B 161 REMARK 465 LYS B 162 REMARK 465 ASP C 160 REMARK 465 ASP C 161 REMARK 465 LYS C 162 REMARK 465 ASP D 161 REMARK 465 LYS D 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 ASP A 160 CG OD1 OD2 REMARK 470 ASP B 159 CG OD1 OD2 REMARK 470 ASP B 160 CG OD1 OD2 REMARK 470 LYS C 17 CG CD CE NZ REMARK 470 ASN C 57 CG OD1 ND2 REMARK 470 ASP C 159 CG OD1 OD2 REMARK 470 ASP D 159 CG OD1 OD2 REMARK 470 ASP D 160 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 4 N CYS A 117 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 23 -134.90 -125.16 REMARK 500 THR A 24 -60.85 -103.37 REMARK 500 ASP A 25 -179.61 -177.39 REMARK 500 ASP A 36 -72.54 -60.71 REMARK 500 TYR A 48 178.25 58.49 REMARK 500 ASN A 57 -122.23 66.93 REMARK 500 GLU A 74 129.00 -36.11 REMARK 500 ASN A 75 34.47 -158.29 REMARK 500 ALA A 77 172.17 -58.48 REMARK 500 ASN A 79 -21.47 94.28 REMARK 500 ARG A 85 153.41 -49.63 REMARK 500 ASN A 87 -2.96 67.48 REMARK 500 TYR A 94 53.49 -66.62 REMARK 500 CYS A 109 -12.14 -33.69 REMARK 500 SER A 128 26.81 42.41 REMARK 500 LYS A 129 -3.84 58.81 REMARK 500 ILE A 137 77.38 -65.51 REMARK 500 ASN A 139 -141.24 -166.41 REMARK 500 ASP A 159 75.06 -102.01 REMARK 500 SER B 11 -148.79 -53.52 REMARK 500 TYR B 23 -136.65 -127.83 REMARK 500 ASP B 25 -172.13 170.41 REMARK 500 VAL B 27 -177.41 -49.41 REMARK 500 TYR B 48 179.51 76.63 REMARK 500 ASN B 57 -90.13 58.28 REMARK 500 LYS B 58 -5.04 -140.67 REMARK 500 GLU B 74 121.37 -39.75 REMARK 500 ASN B 75 52.01 -163.07 REMARK 500 TRP B 76 -177.87 -65.94 REMARK 500 ASN B 79 60.10 67.65 REMARK 500 LYS B 84 -60.67 -100.73 REMARK 500 ARG B 85 162.32 -39.43 REMARK 500 TYR B 94 98.79 -66.50 REMARK 500 ALA B 100 63.18 175.87 REMARK 500 ASN B 105 123.47 179.18 REMARK 500 SER B 126 129.27 -6.20 REMARK 500 SER B 128 14.87 46.25 REMARK 500 GLU B 135 154.20 -49.49 REMARK 500 ILE B 137 90.50 -58.64 REMARK 500 ASN B 139 -125.95 -147.42 REMARK 500 TYR B 140 175.98 178.55 REMARK 500 CYS B 144 135.11 -15.94 REMARK 500 TYR C 23 -127.33 -136.71 REMARK 500 ASP C 25 -176.76 167.87 REMARK 500 VAL C 27 149.07 -34.32 REMARK 500 SER C 46 -19.42 -49.80 REMARK 500 TYR C 48 -173.91 61.77 REMARK 500 ASN C 56 64.38 -111.28 REMARK 500 ASN C 57 114.96 69.27 REMARK 500 LYS C 58 -40.64 50.65 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 49 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 GLU A 80 OE2 45.7 REMARK 620 3 ASN A 82 OD1 57.9 84.3 REMARK 620 4 ASN A 83 ND2 130.8 176.3 92.4 REMARK 620 5 ASN A 105 OD1 84.6 54.2 137.9 128.8 REMARK 620 6 ASP A 106 O 131.0 130.8 141.1 51.9 77.2 REMARK 620 7 ASP A 106 OD1 60.6 97.6 85.1 80.4 92.9 75.2 REMARK 620 8 FUC E 4 O3 123.6 78.1 122.3 105.2 61.2 86.0 151.1 REMARK 620 9 FUC E 4 O4 79.7 48.5 72.9 132.0 82.8 140.4 140.2 54.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 80 OE1 REMARK 620 2 ASN B 82 OD1 86.5 REMARK 620 3 ASN B 82 ND2 45.3 41.3 REMARK 620 4 ASN B 83 ND2 148.4 87.2 123.0 REMARK 620 5 ASN B 105 OD1 66.3 117.7 92.3 142.1 REMARK 620 6 ASP B 106 OD2 106.7 108.9 116.8 47.1 131.8 REMARK 620 7 ASP B 106 OD1 70.9 126.1 103.1 88.2 97.3 41.6 REMARK 620 8 ASP B 106 O 120.4 145.5 155.4 79.7 63.5 85.0 85.5 REMARK 620 9 FUC F 4 O4 66.8 52.3 44.1 129.7 65.5 159.1 137.7 115.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 80 OE1 REMARK 620 2 GLU C 80 OE2 41.1 REMARK 620 3 ASN C 82 OD1 50.8 80.5 REMARK 620 4 ASN C 83 ND2 111.0 148.1 67.6 REMARK 620 5 ASN C 105 OD1 56.8 54.4 105.3 132.0 REMARK 620 6 ASN C 105 ND2 98.0 75.4 148.6 133.2 43.7 REMARK 620 7 ASP C 106 O 111.1 134.9 108.5 59.5 81.0 76.3 REMARK 620 8 ASP C 106 OD1 55.9 94.9 57.5 67.2 69.8 104.5 59.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 80 OE1 REMARK 620 2 GLU D 80 OE2 40.8 REMARK 620 3 ASN D 82 OD1 89.4 62.2 REMARK 620 4 ASN D 83 ND2 166.4 141.7 84.5 REMARK 620 5 ASN D 105 OD1 59.0 81.5 143.6 130.2 REMARK 620 6 ASP D 106 O 138.2 136.2 128.2 52.8 79.3 REMARK 620 7 ASP D 106 OD1 113.6 75.0 67.6 75.1 106.7 73.5 REMARK 620 8 FUC G 4 O4 56.9 90.9 95.1 111.6 82.8 124.8 161.2 REMARK 620 9 FUC G 4 O3 99.8 139.8 125.0 74.2 81.3 74.7 145.0 51.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G1Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P-SELECTIN LECTIN/EGF DOMAINS REMARK 900 RELATED ID: 1G1S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P-SELECTIN LECTIN/EGF DOMAINS REMARK 900 RELATED ID: 1G1T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E-SELECTIN DBREF 1G1R A 1 158 UNP P16109 LEM3_HUMAN 42 199 DBREF 1G1R B 1 158 UNP P16109 LEM3_HUMAN 42 199 DBREF 1G1R C 1 158 UNP P16109 LEM3_HUMAN 42 199 DBREF 1G1R D 1 158 UNP P16109 LEM3_HUMAN 42 199 SEQADV 1G1R ASP A 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1R ASP A 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP A 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP A 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1R LYS A 162 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP B 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1R ASP B 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP B 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP B 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1R LYS B 162 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP C 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1R ASP C 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP C 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP C 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1R LYS C 162 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP D 158 UNP P16109 GLU 199 CONFLICT SEQADV 1G1R ASP D 159 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP D 160 UNP P16109 CLONING ARTIFACT SEQADV 1G1R ASP D 161 UNP P16109 CLONING ARTIFACT SEQADV 1G1R LYS D 162 UNP P16109 CLONING ARTIFACT SEQRES 1 A 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 A 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 A 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 A 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 A 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 A 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 A 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 A 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 A 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 A 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 A 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 A 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 A 162 ARG ASP ASP ASP ASP LYS SEQRES 1 B 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 B 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 B 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 B 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 B 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 B 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 B 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 B 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 B 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 B 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 B 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 B 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 B 162 ARG ASP ASP ASP ASP LYS SEQRES 1 C 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 C 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 C 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 C 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 C 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 C 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 C 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 C 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 C 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 C 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 C 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 C 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 C 162 ARG ASP ASP ASP ASP LYS SEQRES 1 D 162 TRP THR TYR HIS TYR SER THR LYS ALA TYR SER TRP ASN SEQRES 2 D 162 ILE SER ARG LYS TYR CYS GLN ASN ARG TYR THR ASP LEU SEQRES 3 D 162 VAL ALA ILE GLN ASN LYS ASN GLU ILE ASP TYR LEU ASN SEQRES 4 D 162 LYS VAL LEU PRO TYR TYR SER SER TYR TYR TRP ILE GLY SEQRES 5 D 162 ILE ARG LYS ASN ASN LYS THR TRP THR TRP VAL GLY THR SEQRES 6 D 162 LYS LYS ALA LEU THR ASN GLU ALA GLU ASN TRP ALA ASP SEQRES 7 D 162 ASN GLU PRO ASN ASN LYS ARG ASN ASN GLU ASP CYS VAL SEQRES 8 D 162 GLU ILE TYR ILE LYS SER PRO SER ALA PRO GLY LYS TRP SEQRES 9 D 162 ASN ASP GLU HIS CYS LEU LYS LYS LYS HIS ALA LEU CYS SEQRES 10 D 162 TYR THR ALA SER CYS GLN ASP MET SER CYS SER LYS GLN SEQRES 11 D 162 GLY GLU CYS LEU GLU THR ILE GLY ASN TYR THR CYS SER SEQRES 12 D 162 CYS TYR PRO GLY PHE TYR GLY PRO GLU CYS GLU TYR VAL SEQRES 13 D 162 ARG ASP ASP ASP ASP LYS HET MAG E 1 16 HET GAL E 2 11 HET SIA E 3 20 HET FUC E 4 10 HET MAG F 1 16 HET GAL F 2 11 HET SIA F 3 20 HET FUC F 4 10 HET MAG G 1 16 HET GAL G 2 11 HET SIA G 3 20 HET FUC G 4 10 HET CA A 801 1 HET MRD A 806 8 HET CA B 802 1 HET CA C 803 1 HET MRD C 805 8 HET CA D 804 1 HETNAM MAG METHYL 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSIDE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN MAG BETA-METHYL-N-ACETYL-D-GLUCOSAMINE; METHYL 2-ACETAMIDO- HETSYN 2 MAG 2-DEOXY-BETA-D-GLUCOSIDE; METHYL 2-ACETAMIDO-2-DEOXY- HETSYN 3 MAG D-GLUCOSIDE; METHYL 2-ACETAMIDO-2-DEOXY-GLUCOSIDE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 MAG 3(C9 H17 N O6) FORMUL 5 GAL 3(C6 H12 O6) FORMUL 5 SIA 3(C11 H19 N O9) FORMUL 5 FUC 3(C6 H12 O5) FORMUL 8 CA 4(CA 2+) FORMUL 9 MRD 2(C6 H14 O2) HELIX 1 1 SER A 11 TYR A 23 1 13 HELIX 2 2 ASN A 31 LEU A 42 1 12 HELIX 3 3 MET A 125 LYS A 129 5 5 HELIX 4 4 TRP B 12 TYR B 23 1 12 HELIX 5 5 ASN B 31 LEU B 42 1 12 HELIX 6 6 SER B 126 LYS B 129 5 4 HELIX 7 7 SER C 11 TYR C 23 1 13 HELIX 8 8 ASN C 31 LEU C 42 1 12 HELIX 9 9 MET C 125 GLN C 130 5 6 HELIX 10 10 SER D 11 TYR D 23 1 13 HELIX 11 11 ASN D 31 LEU D 42 1 12 HELIX 12 12 MET D 125 GLN D 130 5 6 SHEET 1 A 3 THR A 2 TYR A 5 0 SHEET 2 A 3 HIS A 114 THR A 119 -1 N CYS A 117 O HIS A 4 SHEET 3 A 3 ASP A 25 LEU A 26 -1 O ASP A 25 N TYR A 118 SHEET 1 B 5 THR A 2 TYR A 5 0 SHEET 2 B 5 HIS A 114 THR A 119 -1 N CYS A 117 O HIS A 4 SHEET 3 B 5 TYR A 49 TRP A 50 1 O TRP A 50 N LEU A 116 SHEET 4 B 5 CYS A 90 ILE A 93 -1 N ILE A 93 O TYR A 49 SHEET 5 B 5 TRP A 104 GLU A 107 -1 O ASN A 105 N GLU A 92 SHEET 1 C 2 ILE A 53 ASN A 56 0 SHEET 2 C 2 THR A 59 TRP A 62 -1 O THR A 59 N ASN A 56 SHEET 1 D 2 GLY A 131 THR A 136 0 SHEET 2 D 2 ASN A 139 CYS A 144 -1 O ASN A 139 N THR A 136 SHEET 1 E 2 PHE A 148 TYR A 149 0 SHEET 2 E 2 TYR A 155 VAL A 156 -1 O TYR A 155 N TYR A 149 SHEET 1 F 3 THR B 2 TYR B 5 0 SHEET 2 F 3 HIS B 114 THR B 119 -1 N CYS B 117 O HIS B 4 SHEET 3 F 3 ASP B 25 LEU B 26 -1 O ASP B 25 N TYR B 118 SHEET 1 G 5 THR B 2 TYR B 5 0 SHEET 2 G 5 HIS B 114 THR B 119 -1 N CYS B 117 O HIS B 4 SHEET 3 G 5 TYR B 49 TRP B 50 1 N TRP B 50 O HIS B 114 SHEET 4 G 5 CYS B 90 ILE B 93 -1 N ILE B 93 O TYR B 49 SHEET 5 G 5 TRP B 104 GLU B 107 -1 O ASN B 105 N GLU B 92 SHEET 1 H 2 ILE B 53 ASN B 56 0 SHEET 2 H 2 THR B 59 TRP B 62 -1 N THR B 59 O ASN B 56 SHEET 1 I 2 GLY B 131 THR B 136 0 SHEET 2 I 2 ASN B 139 CYS B 144 -1 O ASN B 139 N THR B 136 SHEET 1 J 2 PHE B 148 TYR B 149 0 SHEET 2 J 2 TYR B 155 VAL B 156 -1 N TYR B 155 O TYR B 149 SHEET 1 K 3 THR C 2 TYR C 5 0 SHEET 2 K 3 HIS C 114 THR C 119 -1 N CYS C 117 O HIS C 4 SHEET 3 K 3 ASP C 25 LEU C 26 -1 O ASP C 25 N TYR C 118 SHEET 1 L 5 THR C 2 TYR C 5 0 SHEET 2 L 5 HIS C 114 THR C 119 -1 N CYS C 117 O HIS C 4 SHEET 3 L 5 TYR C 49 ILE C 51 1 N TRP C 50 O HIS C 114 SHEET 4 L 5 CYS C 90 ILE C 93 -1 O VAL C 91 N ILE C 51 SHEET 5 L 5 TRP C 104 GLU C 107 -1 O ASN C 105 N GLU C 92 SHEET 1 M 3 ARG C 54 LYS C 55 0 SHEET 2 M 3 TRP C 60 TRP C 62 -1 O THR C 61 N ARG C 54 SHEET 3 M 3 LYS C 67 ALA C 68 -1 O LYS C 67 N TRP C 62 SHEET 1 N 2 CYS C 133 GLU C 135 0 SHEET 2 N 2 TYR C 140 CYS C 142 -1 N THR C 141 O LEU C 134 SHEET 1 O 2 PHE C 148 TYR C 149 0 SHEET 2 O 2 TYR C 155 VAL C 156 -1 N TYR C 155 O TYR C 149 SHEET 1 P 5 TRP D 104 GLU D 107 0 SHEET 2 P 5 CYS D 90 ILE D 93 -1 O CYS D 90 N GLU D 107 SHEET 3 P 5 TYR D 49 ARG D 54 -1 O TYR D 49 N ILE D 93 SHEET 4 P 5 HIS D 114 THR D 119 1 O HIS D 114 N TRP D 50 SHEET 5 P 5 THR D 2 TYR D 5 -1 O THR D 2 N THR D 119 SHEET 1 Q 5 TRP D 104 GLU D 107 0 SHEET 2 Q 5 CYS D 90 ILE D 93 -1 O CYS D 90 N GLU D 107 SHEET 3 Q 5 TYR D 49 ARG D 54 -1 O TYR D 49 N ILE D 93 SHEET 4 Q 5 HIS D 114 THR D 119 1 O HIS D 114 N TRP D 50 SHEET 5 Q 5 ASP D 25 LEU D 26 -1 O ASP D 25 N TYR D 118 SHEET 1 R 2 GLU D 132 THR D 136 0 SHEET 2 R 2 ASN D 139 SER D 143 -1 N ASN D 139 O THR D 136 SHEET 1 S 2 PHE D 148 TYR D 149 0 SHEET 2 S 2 TYR D 155 VAL D 156 -1 O TYR D 155 N TYR D 149 SSBOND 1 CYS A 19 CYS A 117 1555 1555 2.03 SSBOND 2 CYS A 90 CYS A 109 1555 1555 2.00 SSBOND 3 CYS A 122 CYS A 133 1555 1555 2.03 SSBOND 4 CYS A 127 CYS A 142 1555 1555 2.03 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.03 SSBOND 6 CYS B 19 CYS B 117 1555 1555 2.03 SSBOND 7 CYS B 90 CYS B 109 1555 1555 2.03 SSBOND 8 CYS B 122 CYS B 133 1555 1555 2.02 SSBOND 9 CYS B 127 CYS B 142 1555 1555 2.02 SSBOND 10 CYS B 144 CYS B 153 1555 1555 2.01 SSBOND 11 CYS C 19 CYS C 117 1555 1555 2.02 SSBOND 12 CYS C 90 CYS C 109 1555 1555 2.03 SSBOND 13 CYS C 122 CYS C 133 1555 1555 2.04 SSBOND 14 CYS C 127 CYS C 142 1555 1555 2.02 SSBOND 15 CYS C 144 CYS C 153 1555 1555 2.02 SSBOND 16 CYS D 19 CYS D 117 1555 1555 2.03 SSBOND 17 CYS D 90 CYS D 109 1555 1555 2.03 SSBOND 18 CYS D 122 CYS D 133 1555 1555 2.01 SSBOND 19 CYS D 127 CYS D 142 1555 1555 2.03 SSBOND 20 CYS D 144 CYS D 153 1555 1555 2.02 LINK O4 MAG E 1 C1 GAL E 2 1555 1555 1.42 LINK O3 MAG E 1 C1 FUC E 4 1555 1555 1.45 LINK O3 GAL E 2 C2 SIA E 3 1555 1555 1.46 LINK O4 MAG F 1 C1 GAL F 2 1555 1555 1.42 LINK O3 MAG F 1 C1 FUC F 4 1555 1555 1.42 LINK O3 GAL F 2 C2 SIA F 3 1555 1555 1.45 LINK O4 MAG G 1 C1 GAL G 2 1555 1555 1.45 LINK O3 MAG G 1 C1 FUC G 4 1555 1555 1.43 LINK O3 GAL G 2 C2 SIA G 3 1555 1555 1.47 LINK OE1 GLU A 80 CA CA A 801 1555 1555 2.88 LINK OE2 GLU A 80 CA CA A 801 1555 1555 2.76 LINK OD1 ASN A 82 CA CA A 801 1555 1555 1.98 LINK ND2 ASN A 83 CA CA A 801 1555 1555 3.05 LINK OD1 ASN A 105 CA CA A 801 1555 1555 2.50 LINK O ASP A 106 CA CA A 801 1555 1555 2.39 LINK OD1 ASP A 106 CA CA A 801 1555 1555 2.32 LINK CA CA A 801 O3 FUC E 4 1555 1555 2.71 LINK CA CA A 801 O4 FUC E 4 1555 1555 3.12 LINK OE1 GLU B 80 CA CA B 802 1555 1555 3.08 LINK OD1 ASN B 82 CA CA B 802 1555 1555 3.17 LINK ND2 ASN B 82 CA CA B 802 1555 1555 3.14 LINK ND2 ASN B 83 CA CA B 802 1555 1555 2.79 LINK OD1 ASN B 105 CA CA B 802 1555 1555 2.68 LINK OD2 ASP B 106 CA CA B 802 1555 1555 3.33 LINK OD1 ASP B 106 CA CA B 802 1555 1555 2.45 LINK O ASP B 106 CA CA B 802 1555 1555 2.84 LINK CA CA B 802 O4 FUC F 4 1555 1555 3.29 LINK CA CA B 802 O3 FUC F 4 1555 1555 2.19 LINK OE1 GLU C 80 CA CA C 803 1555 1555 3.11 LINK OE2 GLU C 80 CA CA C 803 1555 1555 3.15 LINK OD1 ASN C 82 CA CA C 803 1555 1555 2.55 LINK ND2 ASN C 83 CA CA C 803 1555 1555 3.04 LINK OD1 ASN C 105 CA CA C 803 1555 1555 2.22 LINK ND2 ASN C 105 CA CA C 803 1555 1555 3.25 LINK O ASP C 106 CA CA C 803 1555 1555 2.54 LINK OD1 ASP C 106 CA CA C 803 1555 1555 2.58 LINK OE1 GLU D 80 CA CA D 804 1555 1555 3.38 LINK OE2 GLU D 80 CA CA D 804 1555 1555 2.52 LINK OD1 ASN D 82 CA CA D 804 1555 1555 2.42 LINK ND2 ASN D 83 CA CA D 804 1555 1555 2.95 LINK OD1 ASN D 105 CA CA D 804 1555 1555 2.50 LINK O ASP D 106 CA CA D 804 1555 1555 2.69 LINK OD1 ASP D 106 CA CA D 804 1555 1555 2.31 LINK CA CA D 804 O4 FUC G 4 1555 1555 3.39 LINK CA CA D 804 O3 FUC G 4 1555 1555 2.82 CISPEP 1 GLU A 80 PRO A 81 0 -0.13 CISPEP 2 GLU B 80 PRO B 81 0 0.01 CISPEP 3 GLU C 80 PRO C 81 0 -0.53 CISPEP 4 GLU D 80 PRO D 81 0 0.14 CRYST1 81.140 60.520 91.440 90.00 103.28 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012324 0.000000 0.002909 0.00000 SCALE2 0.000000 0.016523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011237 0.00000