HEADER ISOMERASE 30-OCT-00 1G57 TITLE CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHBP SYNTHASE; COMPND 5 EC: 5.4.99.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D(+) KEYWDS DIHYDROXYBUTANONE PHOSPHATE SYNTHASE, RIBOFLAVINE BIOSYNTHESIS, KEYWDS 2 SKELETAL REARRANGEMENT, ANTIMICROBIAL TARGET, STRUCTURE-BASED KEYWDS 3 DESIGN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.-I.LIAO,J.C.CALABRESE,Z.WAWRZAK,P.V.VIITANEN,D.B.JORDAN REVDAT 4 07-FEB-24 1G57 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1G57 1 VERSN REVDAT 2 01-APR-03 1G57 1 JRNL REVDAT 1 30-APR-01 1G57 0 JRNL AUTH D.I.LIAO,J.C.CALABRESE,Z.WAWRZAK,P.V.VIITANEN,D.B.JORDAN JRNL TITL CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE JRNL TITL 2 SYNTHASE OF RIBOFLAVIN BIOSYNTHESIS. JRNL REF STRUCTURE V. 9 11 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11342130 JRNL DOI 10.1016/S0969-2126(00)00550-5 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 93809 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 9380 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 93842 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.018 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.770 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT LIBRARY REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93218 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1025357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CSCL, CS(FORMATE), BIS-TRIS-PROPANE, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.20733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.41467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER. THE TWO MOLECULES REMARK 300 IN THE ASYMMETRIC UNIT REPRESENT THE BIOLOGICAL ASSEMBLY. THE DIMER REMARK 300 HAS A 2-FOLD SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 ASP A 34 REMARK 465 GLU A 35 REMARK 465 ASP A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 214 REMARK 465 LYS A 215 REMARK 465 ALA A 216 REMARK 465 SER A 217 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 ASP B 34 REMARK 465 GLU B 35 REMARK 465 ASP B 36 REMARK 465 ARG B 37 REMARK 465 GLU B 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 635 O HOH B 661 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 214 O HOH A 694 3764 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 38 CD GLU A 38 OE2 0.068 REMARK 500 GLU A 85 CD GLU A 85 OE2 0.066 REMARK 500 GLU A 100 CD GLU A 100 OE2 0.071 REMARK 500 GLU A 103 CD GLU A 103 OE2 0.078 REMARK 500 GLU A 174 CD GLU A 174 OE2 0.083 REMARK 500 GLU A 203 CD GLU A 203 OE2 0.094 REMARK 500 GLU A 213 CD GLU A 213 OE2 0.089 REMARK 500 GLU B 14 CD GLU B 14 OE2 0.076 REMARK 500 GLU B 53 CD GLU B 53 OE2 0.089 REMARK 500 GLU B 85 CD GLU B 85 OE2 0.073 REMARK 500 GLU B 103 CD GLU B 103 OE2 0.067 REMARK 500 GLU B 187 CD GLU B 187 OE2 0.074 REMARK 500 GLU B 190 CD GLU B 190 OE2 0.093 REMARK 500 GLU B 203 CD GLU B 203 OE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 8 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 PHE A 9 CB - CG - CD1 ANGL. DEV. = 9.3 DEGREES REMARK 500 PHE A 9 CE1 - CZ - CE2 ANGL. DEV. = -11.1 DEGREES REMARK 500 PHE A 9 CZ - CE2 - CD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 MET A 30 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLU A 53 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 178 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 178 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP A 179 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 27 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 42 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP B 42 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 PHE B 45 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 60 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 75 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 79 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 THR B 88 N - CA - CB ANGL. DEV. = 14.2 DEGREES REMARK 500 TYR B 91 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 119 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 124 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 124 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 141 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 150 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 150 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 178 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP B 178 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP B 179 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 179 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG B 209 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 GLU B 213 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 GLU B 213 CG - CD - OE2 ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 106 -88.92 -111.10 REMARK 500 THR B 106 -90.53 -115.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 504 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 O REMARK 620 2 ARG A 119 NE 119.9 REMARK 620 3 HOH A 520 O 112.1 121.3 REMARK 620 4 HOH A 548 O 79.3 103.3 61.0 REMARK 620 5 HOH A 562 O 71.2 50.1 142.2 83.9 REMARK 620 6 HOH A 616 O 120.0 87.0 42.3 41.1 101.9 REMARK 620 7 HOH A 628 O 62.7 96.5 131.9 142.0 84.3 173.7 REMARK 620 8 HOH A 693 O 154.6 72.4 49.4 76.0 111.8 35.0 141.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 501 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 59 O REMARK 620 2 ARG A 60 O 71.8 REMARK 620 3 GLY A 62 O 82.6 102.5 REMARK 620 4 HOH A 506 O 57.9 127.6 85.4 REMARK 620 5 HOH A 582 O 153.1 82.5 95.9 149.0 REMARK 620 6 ILE B 59 O 110.8 132.0 125.5 63.1 92.0 REMARK 620 7 CS B 502 CS 56.9 83.2 135.3 58.6 128.7 63.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 502 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 59 O REMARK 620 2 HOH A 506 O 56.0 REMARK 620 3 ILE B 59 O 103.3 54.9 REMARK 620 4 ARG B 60 O 132.9 123.6 71.7 REMARK 620 5 GLY B 62 N 153.9 101.8 66.9 69.0 REMARK 620 6 GLY B 62 O 114.8 81.3 83.1 111.1 42.2 REMARK 620 7 HOH B 564 O 90.0 140.4 164.8 93.9 103.9 98.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 503 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 164 O REMARK 620 2 GLY A 165 O 78.7 REMARK 620 3 HOH A 555 O 117.5 163.8 REMARK 620 4 HOH A 620 O 143.6 65.1 98.8 REMARK 620 5 HOH A 624 O 78.6 89.2 92.9 102.5 REMARK 620 6 HOH A 724 O 130.1 115.5 54.2 72.2 55.5 REMARK 620 7 HOH A 725 O 146.3 87.8 77.8 39.7 70.5 33.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G58 RELATED DB: PDB REMARK 900 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE GOLD DERIVATIVE DBREF 1G57 A 1 217 UNP P0A7J0 RIBB_ECOLI 1 217 DBREF 1G57 B 1 217 UNP P0A7J0 RIBB_ECOLI 1 217 SEQADV 1G57 ALA A 2 UNP P0A7J0 ASN 2 CLONING ARTIFACT SEQADV 1G57 ALA B 2 UNP P0A7J0 ASN 2 CLONING ARTIFACT SEQRES 1 A 217 MET ALA GLN THR LEU LEU SER SER PHE GLY THR PRO PHE SEQRES 2 A 217 GLU ARG VAL GLU ASN ALA LEU ALA ALA LEU ARG GLU GLY SEQRES 3 A 217 ARG GLY VAL MET VAL LEU ASP ASP GLU ASP ARG GLU ASN SEQRES 4 A 217 GLU GLY ASP MET ILE PHE PRO ALA GLU THR MET THR VAL SEQRES 5 A 217 GLU GLN MET ALA LEU THR ILE ARG HIS GLY SER GLY ILE SEQRES 6 A 217 VAL CYS LEU CYS ILE THR GLU ASP ARG ARG LYS GLN LEU SEQRES 7 A 217 ASP LEU PRO MET MET VAL GLU ASN ASN THR SER ALA TYR SEQRES 8 A 217 GLY THR GLY PHE THR VAL THR ILE GLU ALA ALA GLU GLY SEQRES 9 A 217 VAL THR THR GLY VAL SER ALA ALA ASP ARG ILE THR THR SEQRES 10 A 217 VAL ARG ALA ALA ILE ALA ASP GLY ALA LYS PRO SER ASP SEQRES 11 A 217 LEU ASN ARG PRO GLY HIS VAL PHE PRO LEU ARG ALA GLN SEQRES 12 A 217 ALA GLY GLY VAL LEU THR ARG GLY GLY HIS THR GLU ALA SEQRES 13 A 217 THR ILE ASP LEU MET THR LEU ALA GLY PHE LYS PRO ALA SEQRES 14 A 217 GLY VAL LEU CYS GLU LEU THR ASN ASP ASP GLY THR MET SEQRES 15 A 217 ALA ARG ALA PRO GLU CYS ILE GLU PHE ALA ASN LYS HIS SEQRES 16 A 217 ASN MET ALA LEU VAL THR ILE GLU ASP LEU VAL ALA TYR SEQRES 17 A 217 ARG GLN ALA HIS GLU ARG LYS ALA SER SEQRES 1 B 217 MET ALA GLN THR LEU LEU SER SER PHE GLY THR PRO PHE SEQRES 2 B 217 GLU ARG VAL GLU ASN ALA LEU ALA ALA LEU ARG GLU GLY SEQRES 3 B 217 ARG GLY VAL MET VAL LEU ASP ASP GLU ASP ARG GLU ASN SEQRES 4 B 217 GLU GLY ASP MET ILE PHE PRO ALA GLU THR MET THR VAL SEQRES 5 B 217 GLU GLN MET ALA LEU THR ILE ARG HIS GLY SER GLY ILE SEQRES 6 B 217 VAL CYS LEU CYS ILE THR GLU ASP ARG ARG LYS GLN LEU SEQRES 7 B 217 ASP LEU PRO MET MET VAL GLU ASN ASN THR SER ALA TYR SEQRES 8 B 217 GLY THR GLY PHE THR VAL THR ILE GLU ALA ALA GLU GLY SEQRES 9 B 217 VAL THR THR GLY VAL SER ALA ALA ASP ARG ILE THR THR SEQRES 10 B 217 VAL ARG ALA ALA ILE ALA ASP GLY ALA LYS PRO SER ASP SEQRES 11 B 217 LEU ASN ARG PRO GLY HIS VAL PHE PRO LEU ARG ALA GLN SEQRES 12 B 217 ALA GLY GLY VAL LEU THR ARG GLY GLY HIS THR GLU ALA SEQRES 13 B 217 THR ILE ASP LEU MET THR LEU ALA GLY PHE LYS PRO ALA SEQRES 14 B 217 GLY VAL LEU CYS GLU LEU THR ASN ASP ASP GLY THR MET SEQRES 15 B 217 ALA ARG ALA PRO GLU CYS ILE GLU PHE ALA ASN LYS HIS SEQRES 16 B 217 ASN MET ALA LEU VAL THR ILE GLU ASP LEU VAL ALA TYR SEQRES 17 B 217 ARG GLN ALA HIS GLU ARG LYS ALA SER HET CS A 501 1 HET CS A 503 1 HET CS A 504 1 HET CS B 502 1 HETNAM CS CESIUM ION FORMUL 3 CS 4(CS 1+) FORMUL 7 HOH *436(H2 O) HELIX 1 1 LEU A 5 GLY A 10 5 6 HELIX 2 2 THR A 11 GLU A 25 1 15 HELIX 3 3 THR A 51 GLY A 62 1 12 HELIX 4 4 THR A 71 LEU A 78 1 8 HELIX 5 5 SER A 110 ALA A 123 1 14 HELIX 6 6 LYS A 127 SER A 129 5 3 HELIX 7 7 GLY A 145 THR A 149 5 5 HELIX 8 8 GLY A 152 ALA A 164 1 13 HELIX 9 9 ARG A 184 HIS A 195 1 12 HELIX 10 10 ILE A 202 GLU A 213 1 12 HELIX 11 11 THR B 4 GLY B 10 1 7 HELIX 12 12 THR B 11 GLU B 25 1 15 HELIX 13 13 THR B 51 GLY B 62 1 12 HELIX 14 14 THR B 71 ASP B 79 1 9 HELIX 15 15 SER B 110 ALA B 123 1 14 HELIX 16 16 LYS B 127 SER B 129 5 3 HELIX 17 17 GLY B 145 THR B 149 5 5 HELIX 18 18 GLY B 152 GLY B 165 1 14 HELIX 19 19 ARG B 184 HIS B 195 1 12 HELIX 20 20 ILE B 202 GLU B 213 1 12 SHEET 1 A 7 ILE A 99 ALA A 101 0 SHEET 2 A 7 LEU A 131 ARG A 141 -1 N ASN A 132 O GLU A 100 SHEET 3 A 7 CYS A 67 ILE A 70 1 O LEU A 68 N LEU A 140 SHEET 4 A 7 GLY A 170 GLU A 174 -1 O GLY A 170 N CYS A 69 SHEET 5 A 7 GLU A 40 PRO A 46 -1 N MET A 43 O CYS A 173 SHEET 6 A 7 VAL A 29 ASP A 33 -1 O VAL A 29 N ILE A 44 SHEET 7 A 7 ALA A 198 THR A 201 1 O ALA A 198 N MET A 30 SHEET 1 B 7 ILE B 99 ALA B 101 0 SHEET 2 B 7 LEU B 131 ARG B 141 -1 N ASN B 132 O GLU B 100 SHEET 3 B 7 CYS B 67 ILE B 70 1 O LEU B 68 N LEU B 140 SHEET 4 B 7 GLY B 170 GLU B 174 -1 O GLY B 170 N CYS B 69 SHEET 5 B 7 GLY B 41 PRO B 46 -1 N MET B 43 O CYS B 173 SHEET 6 B 7 VAL B 29 LEU B 32 -1 O VAL B 29 N ILE B 44 SHEET 7 B 7 ALA B 198 THR B 201 1 O ALA B 198 N MET B 30 LINK O GLU A 48 CS CS A 504 1555 1555 3.02 LINK O ILE A 59 CS CS A 501 1555 1555 2.98 LINK O ILE A 59 CS CS B 502 1555 1555 2.90 LINK O ARG A 60 CS CS A 501 1555 1555 2.88 LINK O GLY A 62 CS CS A 501 1555 1555 2.80 LINK NE ARG A 119 CS CS A 504 1555 1555 3.57 LINK O ALA A 164 CS CS A 503 1555 1555 3.11 LINK O GLY A 165 CS CS A 503 1555 1555 3.58 LINK CS CS A 501 O HOH A 506 1555 1555 2.45 LINK CS CS A 501 O HOH A 582 1555 1555 2.84 LINK CS CS A 501 O ILE B 59 1555 1555 2.71 LINK CS CS A 501 CS CS B 502 1555 1555 3.10 LINK CS CS A 503 O HOH A 555 1555 1555 2.91 LINK CS CS A 503 O HOH A 620 1555 1555 2.43 LINK CS CS A 503 O HOH A 624 1555 1555 2.93 LINK CS CS A 503 O HOH A 724 1555 1555 3.83 LINK CS CS A 503 O HOH A 725 1555 1555 3.85 LINK CS CS A 504 O HOH A 520 1555 3664 3.51 LINK CS CS A 504 O HOH A 548 1555 3664 2.90 LINK CS CS A 504 O HOH A 562 1555 1555 2.99 LINK CS CS A 504 O HOH A 616 1555 3664 3.75 LINK CS CS A 504 O HOH A 628 1555 1555 2.71 LINK CS CS A 504 O HOH A 693 1555 3664 3.81 LINK O HOH A 506 CS CS B 502 1555 1555 2.78 LINK O ILE B 59 CS CS B 502 1555 1555 3.08 LINK O ARG B 60 CS CS B 502 1555 1555 2.78 LINK N GLY B 62 CS CS B 502 1555 1555 3.94 LINK O GLY B 62 CS CS B 502 1555 1555 2.65 LINK CS CS B 502 O HOH B 564 1555 1555 3.01 CISPEP 1 ARG A 133 PRO A 134 0 -8.37 CISPEP 2 ARG B 133 PRO B 134 0 -3.05 SITE 1 AC1 7 ILE A 59 ARG A 60 GLY A 62 HOH A 506 SITE 2 AC1 7 HOH A 582 ILE B 59 CS B 502 SITE 1 AC2 7 ILE A 59 CS A 501 HOH A 506 ILE B 59 SITE 2 AC2 7 ARG B 60 GLY B 62 HOH B 564 SITE 1 AC3 6 ALA A 164 GLY A 165 PHE A 166 HOH A 555 SITE 2 AC3 6 HOH A 620 HOH A 624 SITE 1 AC4 5 GLU A 48 ARG A 119 HOH A 548 HOH A 562 SITE 2 AC4 5 HOH A 628 CRYST1 78.187 78.187 69.622 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012790 0.007384 -0.000001 0.00000 SCALE2 0.000000 0.014768 -0.000001 0.00000 SCALE3 0.000000 0.000000 0.014363 0.00000