data_1G5D # _entry.id 1G5D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1G5D pdb_00001g5d 10.2210/pdb1g5d/pdb RCSB RCSB012253 ? ? WWPDB D_1000012253 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1A9I 'Apyrimidinic Dna With Bound Water At The Damaged Site, Alpha Form, Nmr, 1 Structure' unspecified PDB 1A9J 'Apyrimidinic Dna With Bound Water At The Damaged Site, Beta Form, Nmr, 1 Structure' unspecified PDB 1GIZ 'Minimized Average Structure: NMR Structure of an Oligonucleotide Containing an Abasic Site: Alpha Anomer' unspecified PDB 1G5E 'Ensemble: NMR Structure of an Oligonucleotide Containing an Abasic Site: Beta Anomer' unspecified PDB 1GJ0 'Minimized average structure: NMR Structure of an Oligonucleotide Containing an Abasic Site: Beta Anomer' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1G5D _pdbx_database_status.recvd_initial_deposition_date 2000-10-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hoehn, S.T.' 1 'Turner, C.J.' 2 'Stubbe, J.' 3 # _citation.id primary _citation.title 'Solution structure of an oligonucleotide containing an abasic site: evidence for an unusual deoxyribose conformation.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 29 _citation.page_first 3413 _citation.page_last 3423 _citation.year 2001 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11504879 _citation.pdbx_database_id_DOI 10.1093/nar/29.16.3413 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoehn, S.T.' 1 ? primary 'Turner, C.J.' 2 ? primary 'Stubbe, J.' 3 ? # _cell.entry_id 1G5D _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*AP*AP*AP*GP*(D1P)P*AP*CP*TP*GP*GP*G)-3'" 3892.526 1 ? ? ? ? 2 polymer syn "5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'" 3942.572 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DA)(DA)(DG)(ORP)(DA)(DC)(DT)(DG)(DG)(DG)' CCAAAGXACTGGG A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DA)(DG)(DT)(DA)(DC)(DT)(DT)(DT)(DG)(DG)' CCCAGTACTTTGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DA n 1 5 DA n 1 6 DG n 1 7 ORP n 1 8 DA n 1 9 DC n 1 10 DT n 1 11 DG n 1 12 DG n 1 13 DG n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DG n 2 6 DT n 2 7 DA n 2 8 DC n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DG n 2 13 DG n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1G5D 1G5D ? ? ? 2 2 PDB 1G5D 1G5D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1G5D A 1 ? 13 ? 1G5D 1 ? 13 ? 1 13 2 2 1G5D B 1 ? 13 ? 1G5D 14 ? 26 ? 14 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ORP saccharide . 2-DEOXY-5-PHOSPHONO-RIBOSE ? 'C5 H11 O7 P' 214.110 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 NOESY 2 1 1 PE-COSY 3 2 2 watergate-NOESY 4 3 3 31P-HCOSY 5 3 3 31P-decoupled-PE-COSY 6 3 3 31P-decoupled-J-scaled-DQCOSY # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 293 ambient 6.8 '10 mM sodium phosphate buffer' ? K 2 278 ambient 6.8 '10 mM sodium phosphate buffer' ? K 3 298 ambient 6.8 '10 mM sodium phosphate buffer' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2.5 mM abasic site containing duplex oligonucleotide; 10 mM sodium phosphate buffer' D2O 2 '2.5 mM abasic site containing duplex oligonucleotide; 10 mM sodium phosphate buffer' '10% D2O, 90% H2O' 3 '3 mM abasic site containing duplex oligonucleotide; 10 mM sodium phosphate buffer' D2O # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Home-built home-built 750 2 ? Home-built home-built 600 # _pdbx_nmr_refine.entry_id 1G5D _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details 'The structure is based on 475 NOE-derived distance constraints and 101 dihedral angle restraints.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1G5D _pdbx_nmr_details.text ;The abasic site deoxyribose 1H-1H coupling constants and the DNA 31P-H3' coupling constants were experimentally determined. This information was used in the modeling protocol. ; # _pdbx_nmr_ensemble.entry_id 1G5D _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.851 'structure solution' Brunger 1 Felix 95.0 processing MSI 2 Felix 95.0 'data analysis' MSI 3 X-PLOR 3.851 refinement Brunger 4 # _exptl.entry_id 1G5D _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1G5D _struct.title 'NMR STRUCTURE OF AN OLIGONUCLEOTIDE CONTAINING AN ABASIC SITE: ALPHA ANOMER' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1G5D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'damaged DNA, apyrimidinic site, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A ORP 7 P ? ? A DG 6 A ORP 7 1_555 ? ? ? ? ? ? ? 1.580 ? ? covale2 covale one ? A ORP 7 O3 ? ? ? 1_555 A DA 8 P ? ? A ORP 7 A DA 8 1_555 ? ? ? ? ? ? ? 1.586 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 2 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 2 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 2 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 3 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 3 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 4 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 4 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 5 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 5 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 6 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 6 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 6 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 8 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 8 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 10 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 10 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 11 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 11 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 11 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1G5D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1G5D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 ORP 7 7 7 ORP D1P A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DG 12 12 12 DG G A . n A 1 13 DG 13 13 13 DG G A . n B 2 1 DC 1 14 14 DC C B . n B 2 2 DC 2 15 15 DC C B . n B 2 3 DC 3 16 16 DC C B . n B 2 4 DA 4 17 17 DA A B . n B 2 5 DG 5 18 18 DG G B . n B 2 6 DT 6 19 19 DT T B . n B 2 7 DA 7 20 20 DA A B . n B 2 8 DC 8 21 21 DC C B . n B 2 9 DT 9 22 22 DT T B . n B 2 10 DT 10 23 23 DT T B . n B 2 11 DT 11 24 24 DT T B . n B 2 12 DG 12 25 25 DG G B . n B 2 13 DG 13 26 26 DG G B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-08-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.411 1.374 0.037 0.006 N 2 1 "C5'" A DT 10 ? ? "C4'" A DT 10 ? ? 1.556 1.512 0.044 0.007 N 3 1 C8 B DG 25 ? ? N9 B DG 25 ? ? 1.331 1.374 -0.043 0.007 N 4 2 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.410 1.374 0.036 0.006 N 5 2 "C5'" A DT 10 ? ? "C4'" A DT 10 ? ? 1.555 1.512 0.043 0.007 N 6 2 "C5'" B DT 24 ? ? "C4'" B DT 24 ? ? 1.555 1.512 0.043 0.007 N 7 3 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.411 1.374 0.037 0.006 N 8 4 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.410 1.374 0.036 0.006 N 9 4 "C5'" A DT 10 ? ? "C4'" A DT 10 ? ? 1.555 1.512 0.043 0.007 N 10 4 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.554 1.512 0.042 0.007 N 11 4 "C5'" B DT 24 ? ? "C4'" B DT 24 ? ? 1.555 1.512 0.043 0.007 N 12 5 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.410 1.374 0.036 0.006 N 13 5 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.554 1.512 0.042 0.007 N 14 5 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 1.554 1.512 0.042 0.007 N 15 6 "C5'" B DT 24 ? ? "C4'" B DT 24 ? ? 1.555 1.512 0.043 0.007 N 16 7 "C5'" B DT 24 ? ? "C4'" B DT 24 ? ? 1.555 1.512 0.043 0.007 N 17 8 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.410 1.374 0.036 0.006 N 18 8 "C5'" A DT 10 ? ? "C4'" A DT 10 ? ? 1.555 1.512 0.043 0.007 N 19 9 "C5'" A DT 10 ? ? "C4'" A DT 10 ? ? 1.555 1.512 0.043 0.007 N 20 9 "C5'" B DA 20 ? ? "C4'" B DA 20 ? ? 1.555 1.512 0.043 0.007 N 21 9 "C5'" B DT 24 ? ? "C4'" B DT 24 ? ? 1.555 1.512 0.043 0.007 N 22 10 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.412 1.374 0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.63 118.60 4.03 0.60 N 2 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 124.05 118.60 5.45 0.60 N 3 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 118.79 123.70 -4.91 0.80 N 4 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.28 119.90 5.38 0.70 N 5 1 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 123.86 118.60 5.26 0.60 N 6 1 C5 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 118.64 123.70 -5.06 0.80 N 7 1 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 125.02 119.90 5.12 0.70 N 8 1 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 124.81 119.90 4.91 0.70 N 9 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.91 118.60 4.31 0.60 N 10 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DG 18 ? ? 127.42 119.70 7.72 1.20 Y 11 1 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.61 119.90 4.71 0.70 N 12 1 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 123.72 118.60 5.12 0.60 N 13 1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 129.36 119.70 9.66 1.20 Y 14 1 N3 B DG 25 ? ? C2 B DG 25 ? ? N2 B DG 25 ? ? 124.38 119.90 4.48 0.70 N 15 1 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.75 119.90 4.85 0.70 N 16 2 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.49 118.60 3.89 0.60 N 17 2 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.66 118.60 5.06 0.60 N 18 2 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 124.39 119.90 4.49 0.70 N 19 2 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 123.48 118.60 4.88 0.60 N 20 2 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 124.39 119.90 4.49 0.70 N 21 2 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 124.86 119.90 4.96 0.70 N 22 2 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.00 108.30 2.70 0.30 N 23 2 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.81 118.60 4.21 0.60 N 24 2 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DG 18 ? ? 127.19 119.70 7.49 1.20 Y 25 2 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.28 119.90 4.38 0.70 N 26 2 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 129.01 119.70 9.31 1.20 Y 27 2 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.56 119.90 4.66 0.70 N 28 3 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.54 118.60 3.94 0.60 N 29 3 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.54 118.60 4.94 0.60 N 30 3 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.27 119.90 5.37 0.70 N 31 3 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 122.85 118.60 4.25 0.60 N 32 3 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 124.35 119.90 4.45 0.70 N 33 3 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 124.91 119.90 5.01 0.70 N 34 3 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.28 108.30 2.98 0.30 N 35 3 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.45 118.60 3.85 0.60 N 36 3 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.29 119.90 4.39 0.70 N 37 3 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 122.79 118.60 4.19 0.60 N 38 3 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 128.99 119.70 9.29 1.20 Y 39 3 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.96 119.90 5.06 0.70 N 40 4 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.61 118.60 4.01 0.60 N 41 4 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.67 118.60 5.07 0.60 N 42 4 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.07 119.90 5.17 0.70 N 43 4 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 123.80 118.60 5.20 0.60 N 44 4 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 124.94 119.90 5.04 0.70 N 45 4 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 125.82 119.90 5.92 0.70 N 46 4 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 112.16 108.30 3.86 0.30 N 47 4 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 123.43 118.60 4.83 0.60 N 48 4 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.84 119.90 4.94 0.70 N 49 4 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 122.47 118.60 3.87 0.60 N 50 4 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 128.86 119.70 9.16 1.20 Y 51 4 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.65 119.90 4.75 0.70 N 52 5 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.65 118.60 4.05 0.60 N 53 5 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 122.30 118.60 3.70 0.60 N 54 5 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.85 118.60 5.25 0.60 N 55 5 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.18 119.90 5.28 0.70 N 56 5 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 124.21 118.60 5.61 0.60 N 57 5 C5 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 118.37 123.70 -5.33 0.80 N 58 5 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 125.49 119.90 5.59 0.70 N 59 5 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 125.83 119.90 5.93 0.70 N 60 5 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 112.45 108.30 4.15 0.30 N 61 5 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.97 118.60 4.37 0.60 N 62 5 "C3'" B DT 19 ? ? "O3'" B DT 19 ? ? P B DA 20 ? ? 127.02 119.70 7.32 1.20 Y 63 5 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 130.18 119.70 10.48 1.20 Y 64 5 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.85 119.90 4.95 0.70 N 65 6 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.51 118.60 3.91 0.60 N 66 6 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.62 118.60 5.02 0.60 N 67 6 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.00 119.90 5.10 0.70 N 68 6 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 123.10 118.60 4.50 0.60 N 69 6 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 125.67 119.90 5.77 0.70 N 70 6 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.47 108.30 3.17 0.30 N 71 6 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.60 118.90 3.70 0.60 N 72 6 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.68 118.60 4.08 0.60 N 73 6 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.85 119.90 4.95 0.70 N 74 6 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 122.57 118.60 3.97 0.60 N 75 6 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 128.39 119.70 8.69 1.20 Y 76 6 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.69 119.90 4.79 0.70 N 77 7 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.58 118.60 3.98 0.60 N 78 7 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.73 118.60 5.13 0.60 N 79 7 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.38 119.90 5.48 0.70 N 80 7 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 122.80 118.60 4.20 0.60 N 81 7 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 124.32 119.90 4.42 0.70 N 82 7 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 124.85 119.90 4.95 0.70 N 83 7 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.28 108.30 2.98 0.30 N 84 7 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.43 118.60 3.83 0.60 N 85 7 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.12 119.90 4.22 0.70 N 86 7 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 123.02 118.60 4.42 0.60 N 87 7 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 128.68 119.70 8.98 1.20 Y 88 7 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.62 119.90 4.72 0.70 N 89 8 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.48 118.60 3.88 0.60 N 90 8 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.64 118.60 5.04 0.60 N 91 8 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.02 119.90 5.12 0.70 N 92 8 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 123.10 118.60 4.50 0.60 N 93 8 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 125.50 119.90 5.60 0.70 N 94 8 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.60 108.30 3.30 0.30 N 95 8 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 123.00 118.60 4.40 0.60 N 96 8 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.93 119.90 5.03 0.70 N 97 8 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 122.58 118.60 3.98 0.60 N 98 8 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 128.31 119.70 8.61 1.20 Y 99 8 N3 B DG 25 ? ? C2 B DG 25 ? ? N2 B DG 25 ? ? 124.14 119.90 4.24 0.70 N 100 8 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.71 119.90 4.81 0.70 N 101 9 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.53 118.60 3.93 0.60 N 102 9 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.64 118.60 5.04 0.60 N 103 9 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 124.39 119.90 4.49 0.70 N 104 9 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 123.70 118.60 5.10 0.60 N 105 9 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 125.30 119.90 5.40 0.70 N 106 9 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 124.59 119.90 4.69 0.70 N 107 9 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 123.14 118.60 4.54 0.60 N 108 9 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DG 18 ? ? 127.08 119.70 7.38 1.20 Y 109 9 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.29 119.90 4.39 0.70 N 110 9 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 128.94 119.70 9.24 1.20 Y 111 9 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.76 119.90 4.86 0.70 N 112 10 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.57 118.60 3.97 0.60 N 113 10 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.71 118.60 5.11 0.60 N 114 10 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 125.25 119.90 5.35 0.70 N 115 10 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 123.23 118.60 4.63 0.60 N 116 10 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 124.54 119.90 4.64 0.70 N 117 10 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 125.37 119.90 5.47 0.70 N 118 10 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.11 108.30 1.81 0.30 N 119 10 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.90 118.60 4.30 0.60 N 120 10 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.44 119.90 4.54 0.70 N 121 10 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 122.77 118.60 4.17 0.60 N 122 10 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DT 22 ? ? 128.89 119.70 9.19 1.20 Y 123 10 N3 B DG 25 ? ? C2 B DG 25 ? ? N2 B DG 25 ? ? 124.14 119.90 4.24 0.70 N 124 10 N3 B DG 26 ? ? C2 B DG 26 ? ? N2 B DG 26 ? ? 124.74 119.90 4.84 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 8 ? ? 0.083 'SIDE CHAIN' 2 1 DC A 9 ? ? 0.072 'SIDE CHAIN' 3 1 DG A 11 ? ? 0.075 'SIDE CHAIN' 4 1 DA B 20 ? ? 0.057 'SIDE CHAIN' 5 1 DT B 22 ? ? 0.058 'SIDE CHAIN' 6 1 DT B 23 ? ? 0.063 'SIDE CHAIN' 7 1 DG B 25 ? ? 0.055 'SIDE CHAIN' 8 2 DG A 6 ? ? 0.082 'SIDE CHAIN' 9 2 DA A 8 ? ? 0.097 'SIDE CHAIN' 10 2 DT A 10 ? ? 0.068 'SIDE CHAIN' 11 2 DG A 11 ? ? 0.086 'SIDE CHAIN' 12 2 DC B 16 ? ? 0.071 'SIDE CHAIN' 13 2 DA B 20 ? ? 0.062 'SIDE CHAIN' 14 2 DG B 25 ? ? 0.082 'SIDE CHAIN' 15 3 DG A 6 ? ? 0.091 'SIDE CHAIN' 16 3 DA A 8 ? ? 0.105 'SIDE CHAIN' 17 3 DG A 11 ? ? 0.086 'SIDE CHAIN' 18 3 DC B 16 ? ? 0.068 'SIDE CHAIN' 19 3 DG B 25 ? ? 0.082 'SIDE CHAIN' 20 4 DG A 6 ? ? 0.088 'SIDE CHAIN' 21 4 DA A 8 ? ? 0.076 'SIDE CHAIN' 22 4 DC A 9 ? ? 0.081 'SIDE CHAIN' 23 4 DG A 11 ? ? 0.082 'SIDE CHAIN' 24 4 DG B 25 ? ? 0.076 'SIDE CHAIN' 25 5 DG A 6 ? ? 0.079 'SIDE CHAIN' 26 5 DG A 11 ? ? 0.085 'SIDE CHAIN' 27 5 DG B 25 ? ? 0.080 'SIDE CHAIN' 28 6 DG A 6 ? ? 0.093 'SIDE CHAIN' 29 6 DA A 8 ? ? 0.099 'SIDE CHAIN' 30 6 DC A 9 ? ? 0.076 'SIDE CHAIN' 31 6 DG A 11 ? ? 0.074 'SIDE CHAIN' 32 6 DA B 20 ? ? 0.058 'SIDE CHAIN' 33 6 DG B 25 ? ? 0.085 'SIDE CHAIN' 34 7 DG A 6 ? ? 0.091 'SIDE CHAIN' 35 7 DA A 8 ? ? 0.104 'SIDE CHAIN' 36 7 DG A 11 ? ? 0.086 'SIDE CHAIN' 37 7 DC B 16 ? ? 0.067 'SIDE CHAIN' 38 7 DG B 25 ? ? 0.077 'SIDE CHAIN' 39 8 DG A 6 ? ? 0.093 'SIDE CHAIN' 40 8 DA A 8 ? ? 0.098 'SIDE CHAIN' 41 8 DC A 9 ? ? 0.080 'SIDE CHAIN' 42 8 DG A 11 ? ? 0.073 'SIDE CHAIN' 43 8 DG A 13 ? ? 0.056 'SIDE CHAIN' 44 8 DA B 20 ? ? 0.057 'SIDE CHAIN' 45 8 DG B 25 ? ? 0.090 'SIDE CHAIN' 46 9 DG A 6 ? ? 0.079 'SIDE CHAIN' 47 9 DA A 8 ? ? 0.090 'SIDE CHAIN' 48 9 DT A 10 ? ? 0.068 'SIDE CHAIN' 49 9 DG A 11 ? ? 0.085 'SIDE CHAIN' 50 9 DC B 16 ? ? 0.076 'SIDE CHAIN' 51 9 DA B 20 ? ? 0.068 'SIDE CHAIN' 52 9 DG B 25 ? ? 0.081 'SIDE CHAIN' 53 10 DG A 6 ? ? 0.096 'SIDE CHAIN' 54 10 DA A 8 ? ? 0.108 'SIDE CHAIN' 55 10 DG A 11 ? ? 0.082 'SIDE CHAIN' 56 10 DG B 25 ? ? 0.077 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1G5D 'double helix' 1G5D 'b-form double helix' 1G5D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 13 1_555 0.654 -0.110 -0.456 39.797 -28.551 -0.296 1 A_DC1:DG26_B A 1 ? B 26 ? 19 1 1 A DC 2 1_555 B DG 12 1_555 0.406 -0.181 -0.368 27.111 -23.866 -1.085 2 A_DC2:DG25_B A 2 ? B 25 ? 19 1 1 A DA 3 1_555 B DT 11 1_555 0.074 -0.178 -0.057 -17.235 -11.896 1.207 3 A_DA3:DT24_B A 3 ? B 24 ? 20 1 1 A DA 4 1_555 B DT 10 1_555 -0.041 -0.208 0.037 -15.443 -6.528 -0.261 4 A_DA4:DT23_B A 4 ? B 23 ? 20 1 1 A DA 5 1_555 B DT 9 1_555 -0.054 -0.187 0.114 -13.876 -1.433 -7.257 5 A_DA5:DT22_B A 5 ? B 22 ? 20 1 1 A DG 6 1_555 B DC 8 1_555 -0.593 -0.369 0.454 1.014 -9.657 -4.516 6 A_DG6:DC21_B A 6 ? B 21 ? 19 1 1 A DA 8 1_555 B DT 6 1_555 0.114 -0.109 0.270 8.826 -5.710 -10.639 7 A_DA8:DT19_B A 8 ? B 19 ? 20 1 1 A DC 9 1_555 B DG 5 1_555 0.460 -0.270 0.466 8.731 -7.980 -1.124 8 A_DC9:DG18_B A 9 ? B 18 ? 19 1 1 A DT 10 1_555 B DA 4 1_555 -0.156 -0.198 0.163 8.515 -7.538 -0.951 9 A_DT10:DA17_B A 10 ? B 17 ? 20 1 1 A DG 11 1_555 B DC 3 1_555 -0.234 -0.242 0.033 -14.142 -18.270 -1.219 10 A_DG11:DC16_B A 11 ? B 16 ? 19 1 1 A DG 12 1_555 B DC 2 1_555 -0.490 -0.195 -0.065 -29.166 -22.952 -1.459 11 A_DG12:DC15_B A 12 ? B 15 ? 19 1 1 A DG 13 1_555 B DC 1 1_555 -0.617 -0.260 0.136 -25.304 -10.436 -3.516 12 A_DG13:DC14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 13 1_555 A DC 2 1_555 B DG 12 1_555 0.760 -0.282 3.693 1.066 1.927 38.440 -0.697 -1.003 3.694 2.924 -1.617 38.501 1 AA_DC1DC2:DG25DG26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DC 2 1_555 B DG 12 1_555 A DA 3 1_555 B DT 11 1_555 0.310 -0.699 4.071 0.228 12.353 43.942 -2.227 -0.376 3.754 16.133 -0.298 45.563 2 AA_DC2DA3:DT24DG25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A DA 3 1_555 B DT 11 1_555 A DA 4 1_555 B DT 10 1_555 -0.292 -0.457 3.198 -0.685 -3.161 36.882 -0.302 0.369 3.230 -4.984 1.080 37.019 3 AA_DA3DA4:DT23DT24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A DA 4 1_555 B DT 10 1_555 A DA 5 1_555 B DT 9 1_555 -0.712 -0.469 3.219 -2.572 -1.308 33.866 -0.594 0.809 3.278 -2.240 4.405 33.985 4 AA_DA4DA5:DT22DT23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DA 5 1_555 B DT 9 1_555 A DG 6 1_555 B DC 8 1_555 -0.470 -0.515 2.928 -2.529 -6.136 34.301 -0.010 0.434 2.999 -10.285 4.239 34.918 5 AA_DA5DG6:DC21DT22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A DG 6 1_555 B DC 8 1_555 A DA 8 1_555 B DT 6 1_555 -0.393 0.533 6.232 -7.416 -14.027 83.322 1.021 -0.039 6.114 -10.467 5.534 84.547 6 AA_DG6DA8:DT19DC21_BB A 6 ? B 21 ? A 8 ? B 19 ? 1 A DA 8 1_555 B DT 6 1_555 A DC 9 1_555 B DG 5 1_555 0.257 -0.063 3.334 -2.788 -2.574 35.454 0.278 -0.831 3.301 -4.212 4.563 35.650 7 AA_DA8DC9:DG18DT19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A DC 9 1_555 B DG 5 1_555 A DT 10 1_555 B DA 4 1_555 0.161 -0.973 3.332 1.652 -7.150 35.541 -0.512 -0.015 3.460 -11.562 -2.671 36.266 8 AA_DC9DT10:DA17DG18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A DT 10 1_555 B DA 4 1_555 A DG 11 1_555 B DC 3 1_555 -0.177 -0.872 3.691 -2.707 3.270 41.340 -1.618 -0.072 3.619 4.618 3.822 41.548 9 AA_DT10DG11:DC16DA17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A DG 11 1_555 B DC 3 1_555 A DG 12 1_555 B DC 2 1_555 -0.132 -0.904 3.507 1.857 5.568 38.898 -2.039 0.429 3.341 8.304 -2.769 39.322 10 AA_DG11DG12:DC15DC16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DG 12 1_555 B DC 2 1_555 A DG 13 1_555 B DC 1 1_555 -0.617 -0.310 3.146 -1.750 -0.304 39.076 -0.428 0.718 3.172 -0.454 2.615 39.115 11 AA_DG12DG13:DC14DC15_BB A 12 ? B 15 ? A 13 ? B 14 ? #