HEADER HYDROLASE 07-NOV-00 1G6O TITLE CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ATPASE, HP0525, IN TITLE 2 COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAG-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRAFFIC ATPASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PWP4760 KEYWDS ATPASE, TYPE IV SECRETION SYSTEM, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.YEO,S.N.SAVVIDES,A.B.HERR,E.LANKA,G.WAKSMAN,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 6 13-JUL-11 1G6O 1 VERSN REVDAT 5 03-NOV-09 1G6O 1 HETATM REVDAT 4 24-FEB-09 1G6O 1 VERSN REVDAT 3 18-JAN-05 1G6O 1 AUTHOR KEYWDS REMARK REVDAT 2 13-APR-04 1G6O 1 AUTHOR JRNL REMARK MASTER REVDAT 1 24-JAN-01 1G6O 0 JRNL AUTH H.J.YEO,S.N.SAVVIDES,A.B.HERR,E.LANKA,G.WAKSMAN JRNL TITL CRYSTAL STRUCTURE OF THE HEXAMERIC TRAFFIC ATPASE OF THE JRNL TITL 2 HELICOBACTER PYLORI TYPE IV SECRETION SYSTEM. JRNL REF MOL.CELL V. 6 1461 2000 JRNL REFN ISSN 1097-2765 JRNL PMID 11163218 JRNL DOI 10.1016/S1097-2765(00)00142-8 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 583702.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 27326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1354 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2203 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 111 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.85 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.620 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.710 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.580 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.960 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 44.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ADP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : 9PEG.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ADP.TOPO REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : 9PEG.TOPO REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-00. REMARK 100 THE RCSB ID CODE IS RCSB012300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, CALCIUM ACETATE, GLYCEROL, REMARK 280 ADP-MG, TRIS-HCL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.41500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.41500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.41500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 117.41500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.41500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 117.41500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FUNCTIONAL HEXAMER CAN BE GENERATED FROM THE TWO REMARK 300 MOLECULES IN THE ASYMMETRIC UNIT BY THREE FOLD AXES INTRINSIC TO REMARK 300 SPACE GROUP P6(3)22 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 80110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.31000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.53178 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -56.31000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 97.53178 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 62650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 157160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -207.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.31000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.53178 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -56.31000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 97.53178 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 56.31000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 97.53178 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 117.41500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 117.41500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -56.31000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 97.53178 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 117.41500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 HIS A 329 REMARK 465 ARG A 330 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 4 REMARK 465 ARG B 5 REMARK 465 HIS B 329 REMARK 465 ARG B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 296 CG OD1 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 SER A 301 OG REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 ARG B 295 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 296 CG OD1 REMARK 470 ILE B 297 CG1 CG2 CD1 REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 SER B 301 OG REMARK 470 LYS B 328 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 PEG B 503 C3 PEG B 504 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 272 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 99 -99.20 -132.01 REMARK 500 ASN A 101 53.75 -141.01 REMARK 500 ASN A 156 63.52 -114.12 REMARK 500 GLU A 209 -39.03 -138.11 REMARK 500 ARG A 240 63.51 37.42 REMARK 500 GLU A 248 134.08 -170.81 REMARK 500 ARG A 250 -58.94 -136.97 REMARK 500 SER A 251 -112.86 -137.87 REMARK 500 SER A 292 -65.04 -29.29 REMARK 500 ALA A 293 28.74 -60.37 REMARK 500 MSE A 312 140.20 -172.02 REMARK 500 GLU A 324 119.77 -172.79 REMARK 500 ASP B 72 44.76 -105.25 REMARK 500 TYR B 99 -92.26 -128.01 REMARK 500 ASN B 101 59.04 -140.69 REMARK 500 SER B 106 -158.98 -152.88 REMARK 500 ASN B 156 59.93 -108.54 REMARK 500 GLU B 209 -36.87 -135.76 REMARK 500 ARG B 250 -127.85 -128.73 REMARK 500 SER B 251 -100.44 -75.56 REMARK 500 SER B 292 -68.61 -28.51 REMARK 500 ALA B 293 31.97 -60.02 REMARK 500 MSE B 312 132.36 -171.03 REMARK 500 ASN B 317 -169.11 -74.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1022 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A1207 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1258 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1275 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH B1205 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH B1282 DISTANCE = 5.42 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG B 501 REMARK 610 PEG B 502 REMARK 610 PEG B 503 REMARK 610 PEG B 504 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC784 RELATED DB: TARGETDB DBREF 1G6O A 1 330 GB 8843975 AAF80196 1 330 DBREF 1G6O B 1 330 GB 8843975 AAF80196 1 330 SEQADV 1G6O MSE A 42 GB 8843975 MET 42 MODIFIED RESIDUE SEQADV 1G6O MSE A 82 GB 8843975 MET 82 MODIFIED RESIDUE SEQADV 1G6O MSE A 192 GB 8843975 MET 192 MODIFIED RESIDUE SEQADV 1G6O MSE A 239 GB 8843975 MET 239 MODIFIED RESIDUE SEQADV 1G6O MSE A 287 GB 8843975 MET 287 MODIFIED RESIDUE SEQADV 1G6O MSE A 312 GB 8843975 MET 312 MODIFIED RESIDUE SEQADV 1G6O MSE B 42 GB 8843975 MET 42 MODIFIED RESIDUE SEQADV 1G6O MSE B 82 GB 8843975 MET 82 MODIFIED RESIDUE SEQADV 1G6O MSE B 192 GB 8843975 MET 192 MODIFIED RESIDUE SEQADV 1G6O MSE B 239 GB 8843975 MET 239 MODIFIED RESIDUE SEQADV 1G6O MSE B 287 GB 8843975 MET 287 MODIFIED RESIDUE SEQADV 1G6O MSE B 312 GB 8843975 MET 312 MODIFIED RESIDUE SEQRES 1 A 330 MET THR GLU ASP ARG LEU SER ALA GLU ASP LYS LYS PHE SEQRES 2 A 330 LEU GLU VAL GLU ARG ALA LEU LYS GLU ALA ALA LEU ASN SEQRES 3 A 330 PRO LEU ARG HIS ALA THR GLU GLU LEU PHE GLY ASP PHE SEQRES 4 A 330 LEU LYS MSE GLU ASN ILE THR GLU ILE CYS TYR ASN GLY SEQRES 5 A 330 ASN LYS VAL VAL TRP VAL LEU LYS ASN ASN GLY GLU TRP SEQRES 6 A 330 GLN PRO PHE ASP VAL ARG ASP ARG LYS ALA PHE SER LEU SEQRES 7 A 330 SER ARG LEU MSE HIS PHE ALA ARG CYS CYS ALA SER PHE SEQRES 8 A 330 LYS LYS LYS THR ILE ASP ASN TYR GLU ASN PRO ILE LEU SEQRES 9 A 330 SER SER ASN LEU ALA ASN GLY GLU ARG VAL GLN ILE VAL SEQRES 10 A 330 LEU SER PRO VAL THR VAL ASN ASP GLU THR ILE SER ILE SEQRES 11 A 330 SER ILE ARG ILE PRO SER LYS THR THR TYR PRO HIS SER SEQRES 12 A 330 PHE PHE GLU GLU GLN GLY PHE TYR ASN LEU LEU ASP ASN SEQRES 13 A 330 LYS GLU GLN ALA ILE SER ALA ILE LYS ASP GLY ILE ALA SEQRES 14 A 330 ILE GLY LYS ASN VAL ILE VAL CYS GLY GLY THR GLY SER SEQRES 15 A 330 GLY LYS THR THR TYR ILE LYS SER ILE MSE GLU PHE ILE SEQRES 16 A 330 PRO LYS GLU GLU ARG ILE ILE SER ILE GLU ASP THR GLU SEQRES 17 A 330 GLU ILE VAL PHE LYS HIS HIS LYS ASN TYR THR GLN LEU SEQRES 18 A 330 PHE PHE GLY GLY ASN ILE THR SER ALA ASP CYS LEU LYS SEQRES 19 A 330 SER CYS LEU ARG MSE ARG PRO ASP ARG ILE ILE LEU GLY SEQRES 20 A 330 GLU LEU ARG SER SER GLU ALA TYR ASP PHE TYR ASN VAL SEQRES 21 A 330 LEU CYS SER GLY HIS LYS GLY THR LEU THR THR LEU HIS SEQRES 22 A 330 ALA GLY SER SER GLU GLU ALA PHE ILE ARG LEU ALA ASN SEQRES 23 A 330 MSE SER SER SER ASN SER ALA ALA ARG ASN ILE LYS PHE SEQRES 24 A 330 GLU SER LEU ILE GLU GLY PHE LYS ASP LEU ILE ASP MSE SEQRES 25 A 330 ILE VAL HIS ILE ASN HIS HIS LYS GLN CYS ASP GLU PHE SEQRES 26 A 330 TYR ILE LYS HIS ARG SEQRES 1 B 330 MET THR GLU ASP ARG LEU SER ALA GLU ASP LYS LYS PHE SEQRES 2 B 330 LEU GLU VAL GLU ARG ALA LEU LYS GLU ALA ALA LEU ASN SEQRES 3 B 330 PRO LEU ARG HIS ALA THR GLU GLU LEU PHE GLY ASP PHE SEQRES 4 B 330 LEU LYS MSE GLU ASN ILE THR GLU ILE CYS TYR ASN GLY SEQRES 5 B 330 ASN LYS VAL VAL TRP VAL LEU LYS ASN ASN GLY GLU TRP SEQRES 6 B 330 GLN PRO PHE ASP VAL ARG ASP ARG LYS ALA PHE SER LEU SEQRES 7 B 330 SER ARG LEU MSE HIS PHE ALA ARG CYS CYS ALA SER PHE SEQRES 8 B 330 LYS LYS LYS THR ILE ASP ASN TYR GLU ASN PRO ILE LEU SEQRES 9 B 330 SER SER ASN LEU ALA ASN GLY GLU ARG VAL GLN ILE VAL SEQRES 10 B 330 LEU SER PRO VAL THR VAL ASN ASP GLU THR ILE SER ILE SEQRES 11 B 330 SER ILE ARG ILE PRO SER LYS THR THR TYR PRO HIS SER SEQRES 12 B 330 PHE PHE GLU GLU GLN GLY PHE TYR ASN LEU LEU ASP ASN SEQRES 13 B 330 LYS GLU GLN ALA ILE SER ALA ILE LYS ASP GLY ILE ALA SEQRES 14 B 330 ILE GLY LYS ASN VAL ILE VAL CYS GLY GLY THR GLY SER SEQRES 15 B 330 GLY LYS THR THR TYR ILE LYS SER ILE MSE GLU PHE ILE SEQRES 16 B 330 PRO LYS GLU GLU ARG ILE ILE SER ILE GLU ASP THR GLU SEQRES 17 B 330 GLU ILE VAL PHE LYS HIS HIS LYS ASN TYR THR GLN LEU SEQRES 18 B 330 PHE PHE GLY GLY ASN ILE THR SER ALA ASP CYS LEU LYS SEQRES 19 B 330 SER CYS LEU ARG MSE ARG PRO ASP ARG ILE ILE LEU GLY SEQRES 20 B 330 GLU LEU ARG SER SER GLU ALA TYR ASP PHE TYR ASN VAL SEQRES 21 B 330 LEU CYS SER GLY HIS LYS GLY THR LEU THR THR LEU HIS SEQRES 22 B 330 ALA GLY SER SER GLU GLU ALA PHE ILE ARG LEU ALA ASN SEQRES 23 B 330 MSE SER SER SER ASN SER ALA ALA ARG ASN ILE LYS PHE SEQRES 24 B 330 GLU SER LEU ILE GLU GLY PHE LYS ASP LEU ILE ASP MSE SEQRES 25 B 330 ILE VAL HIS ILE ASN HIS HIS LYS GLN CYS ASP GLU PHE SEQRES 26 B 330 TYR ILE LYS HIS ARG MODRES 1G6O MSE A 42 MET SELENOMETHIONINE MODRES 1G6O MSE A 82 MET SELENOMETHIONINE MODRES 1G6O MSE A 192 MET SELENOMETHIONINE MODRES 1G6O MSE A 239 MET SELENOMETHIONINE MODRES 1G6O MSE A 287 MET SELENOMETHIONINE MODRES 1G6O MSE A 312 MET SELENOMETHIONINE MODRES 1G6O MSE B 42 MET SELENOMETHIONINE MODRES 1G6O MSE B 82 MET SELENOMETHIONINE MODRES 1G6O MSE B 192 MET SELENOMETHIONINE MODRES 1G6O MSE B 239 MET SELENOMETHIONINE MODRES 1G6O MSE B 287 MET SELENOMETHIONINE MODRES 1G6O MSE B 312 MET SELENOMETHIONINE HET MSE A 42 8 HET MSE A 82 8 HET MSE A 192 8 HET MSE A 239 8 HET MSE A 287 8 HET MSE A 312 8 HET MSE B 42 8 HET MSE B 82 8 HET MSE B 192 8 HET MSE B 239 8 HET MSE B 287 8 HET MSE B 312 8 HET ADP A 401 27 HET ADP B 402 27 HET PEG B 500 7 HET PEG B 501 6 HET PEG B 502 6 HET PEG B 503 6 HET PEG B 504 3 HETNAM MSE SELENOMETHIONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 PEG 5(C4 H10 O3) FORMUL 10 HOH *295(H2 O) HELIX 1 1 LEU A 6 GLU A 15 1 10 HELIX 2 2 LEU A 14 GLY A 37 1 24 HELIX 3 3 PHE A 36 LYS A 41 1 6 HELIX 4 4 ARG A 73 PHE A 76 5 4 HELIX 5 5 SER A 77 LYS A 92 1 16 HELIX 6 6 PRO A 141 GLN A 148 1 8 HELIX 7 7 ASN A 156 GLY A 171 1 16 HELIX 8 8 GLY A 183 MSE A 192 1 10 HELIX 9 9 GLU A 193 ILE A 195 5 3 HELIX 10 10 THR A 228 LEU A 237 1 10 HELIX 11 11 SER A 252 SER A 263 1 12 HELIX 12 12 SER A 276 SER A 290 1 15 HELIX 13 13 ASN A 291 ARG A 295 5 5 HELIX 14 14 LYS A 298 ILE A 310 1 13 HELIX 15 15 LEU B 6 GLU B 15 1 10 HELIX 16 16 LEU B 14 GLY B 37 1 24 HELIX 17 17 PHE B 36 LYS B 41 1 6 HELIX 18 18 ARG B 73 PHE B 76 5 4 HELIX 19 19 SER B 77 LYS B 92 1 16 HELIX 20 20 PRO B 141 GLN B 148 1 8 HELIX 21 21 ASN B 156 GLY B 171 1 16 HELIX 22 22 GLY B 183 MSE B 192 1 10 HELIX 23 23 GLU B 193 ILE B 195 5 3 HELIX 24 24 THR B 228 LEU B 237 1 10 HELIX 25 25 SER B 252 SER B 263 1 12 HELIX 26 26 SER B 276 SER B 290 1 15 HELIX 27 27 ASN B 291 ARG B 295 5 5 HELIX 28 28 LYS B 298 ILE B 310 1 13 SHEET 1 A 6 TRP A 65 ASP A 69 0 SHEET 2 A 6 VAL A 55 LYS A 60 -1 N VAL A 56 O PHE A 68 SHEET 3 A 6 ILE A 45 TYR A 50 -1 N THR A 46 O LEU A 59 SHEET 4 A 6 SER A 129 ARG A 133 -1 O ILE A 130 N TYR A 50 SHEET 5 A 6 ARG A 113 VAL A 117 -1 O ARG A 113 N ARG A 133 SHEET 6 A 6 ILE A 103 ASN A 107 -1 N LEU A 104 O ILE A 116 SHEET 1 B 7 TYR A 218 PHE A 222 0 SHEET 2 B 7 ILE A 201 GLU A 205 1 O ILE A 201 N THR A 219 SHEET 3 B 7 ARG A 243 LEU A 246 1 O ARG A 243 N ILE A 202 SHEET 4 B 7 THR A 268 HIS A 273 1 O LEU A 269 N LEU A 246 SHEET 5 B 7 VAL A 174 GLY A 178 1 N VAL A 174 O THR A 268 SHEET 6 B 7 MSE A 312 ILE A 316 1 O MSE A 312 N ILE A 175 SHEET 7 B 7 CYS A 322 ILE A 327 -1 N ASP A 323 O HIS A 315 SHEET 1 C 6 TRP B 65 ASP B 69 0 SHEET 2 C 6 VAL B 55 LYS B 60 -1 N VAL B 56 O PHE B 68 SHEET 3 C 6 ILE B 45 TYR B 50 -1 N THR B 46 O LEU B 59 SHEET 4 C 6 SER B 129 ARG B 133 -1 O ILE B 130 N TYR B 50 SHEET 5 C 6 ARG B 113 VAL B 117 -1 O ARG B 113 N ARG B 133 SHEET 6 C 6 ILE B 103 ASN B 107 -1 N LEU B 104 O ILE B 116 SHEET 1 D 7 TYR B 218 PHE B 222 0 SHEET 2 D 7 ILE B 201 GLU B 205 1 O ILE B 201 N THR B 219 SHEET 3 D 7 ARG B 243 LEU B 246 1 O ARG B 243 N ILE B 202 SHEET 4 D 7 THR B 268 HIS B 273 1 N LEU B 269 O ILE B 244 SHEET 5 D 7 VAL B 174 GLY B 178 1 N VAL B 174 O THR B 268 SHEET 6 D 7 MSE B 312 ILE B 316 1 O MSE B 312 N ILE B 175 SHEET 7 D 7 CYS B 322 ILE B 327 -1 N ASP B 323 O HIS B 315 LINK O4 PEG B 500 C1 PEG B 501 1555 1555 1.46 LINK O4 PEG B 501 C1 PEG B 502 1555 1555 1.45 LINK C1 PEG B 503 O4 PEG B 502 1555 1555 1.44 LINK C LYS A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N GLU A 43 1555 1555 1.33 LINK C LEU A 81 N MSE A 82 1555 1555 1.34 LINK C MSE A 82 N HIS A 83 1555 1555 1.33 LINK C ILE A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N GLU A 193 1555 1555 1.34 LINK C ARG A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N ARG A 240 1555 1555 1.34 LINK C ASN A 286 N MSE A 287 1555 1555 1.34 LINK C MSE A 287 N SER A 288 1555 1555 1.33 LINK C ASP A 311 N MSE A 312 1555 1555 1.33 LINK C MSE A 312 N ILE A 313 1555 1555 1.33 LINK C LYS B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N GLU B 43 1555 1555 1.33 LINK C LEU B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N HIS B 83 1555 1555 1.33 LINK C ILE B 191 N MSE B 192 1555 1555 1.33 LINK C MSE B 192 N GLU B 193 1555 1555 1.34 LINK C ARG B 238 N MSE B 239 1555 1555 1.34 LINK C MSE B 239 N ARG B 240 1555 1555 1.34 LINK C ASN B 286 N MSE B 287 1555 1555 1.34 LINK C MSE B 287 N SER B 288 1555 1555 1.33 LINK C ASP B 311 N MSE B 312 1555 1555 1.33 LINK C MSE B 312 N ILE B 313 1555 1555 1.33 CISPEP 1 SER A 119 PRO A 120 0 0.35 CISPEP 2 SER B 119 PRO B 120 0 0.19 SITE 1 AC1 9 ASN A 61 ARG A 133 PHE A 145 GLY A 181 SITE 2 AC1 9 GLY A 183 LYS A 184 THR A 185 THR A 186 SITE 3 AC1 9 LYS A 320 SITE 1 AC2 13 ASN B 61 ARG B 133 SER B 136 PHE B 145 SITE 2 AC2 13 GLY B 181 SER B 182 GLY B 183 LYS B 184 SITE 3 AC2 13 THR B 185 THR B 186 LYS B 320 HOH B1011 SITE 4 AC2 13 HOH B1286 SITE 1 AC3 4 GLU A 43 PRO B 67 ASP B 69 PEG B 501 SITE 1 AC4 6 ASP A 38 PHE B 68 ASP B 69 ARG B 73 SITE 2 AC4 6 PEG B 500 PEG B 502 SITE 1 AC5 4 ASP A 69 ASP B 38 PEG B 501 PEG B 503 SITE 1 AC6 6 PRO A 67 PHE A 68 ASP A 69 PEG B 502 SITE 2 AC6 6 PEG B 504 HOH B1128 SITE 1 AC7 1 PEG B 503 CRYST1 112.620 112.620 234.830 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008879 0.005127 0.000000 0.00000 SCALE2 0.000000 0.010253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004258 0.00000