HEADER REPLICATION 08-NOV-00 1G71 TITLE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS DNA PRIMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL 21 DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 22 B (+) KEYWDS ZINC-KNUCKLE, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.AUGUSTIN,R.HUBER,J.T.KAISER REVDAT 3 07-FEB-24 1G71 1 REMARK LINK REVDAT 2 24-FEB-09 1G71 1 VERSN REVDAT 1 10-JAN-01 1G71 0 JRNL AUTH M.A.AUGUSTIN,R.HUBER,J.T.KAISER JRNL TITL CRYSTAL STRUCTURE OF A DNA-DEPENDENT RNA POLYMERASE (DNA JRNL TITL 2 PRIMASE). JRNL REF NAT.STRUCT.BIOL. V. 8 57 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11135672 JRNL DOI 10.1038/83060 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 500.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 46200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 4646 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 687 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 12.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 86 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5704 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.82000 REMARK 3 B22 (A**2) : -2.13000 REMARK 3 B33 (A**2) : -3.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.448 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK_SOLVENT CORRECTION CNS 1.0 REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 62.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 17.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS/CL, 2M AMMONIUMSULFATE, PH REMARK 280 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.94150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.16300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.94150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.16300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 345 REMARK 465 TYR A 346 REMARK 465 GLU A 347 REMARK 465 GLU B 345 REMARK 465 TYR B 346 REMARK 465 GLU B 347 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 12 OG REMARK 480 GLU A 13 CG CD OE1 OE2 REMARK 480 LYS A 17 CB CG CD CE NZ REMARK 480 LYS A 22 CG CD CE NZ REMARK 480 LYS A 26 CD CE NZ REMARK 480 ARG A 57 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 83 CB CG CD OE1 OE2 REMARK 480 GLU A 85 CB CG CD OE1 OE2 REMARK 480 ARG A 88 NE CZ NH1 NH2 REMARK 480 GLU A 119 CD OE1 OE2 REMARK 480 LYS A 165 CD CE NZ REMARK 480 GLU A 183 CD OE1 OE2 REMARK 480 ARG A 187 CD NE CZ NH1 NH2 REMARK 480 LYS A 192 CE NZ REMARK 480 ARG A 229 NE CZ NH1 NH2 REMARK 480 LYS A 233 CD CE NZ REMARK 480 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 300 CD CE NZ REMARK 480 LYS A 327 CD CE NZ REMARK 480 LYS A 331 CB CG CD CE NZ REMARK 480 ARG A 334 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 335 OE1 OE2 REMARK 480 LYS A 338 CE NZ REMARK 480 GLU A 342 CG CD OE1 OE2 REMARK 480 GLU B 9 CG CD OE1 OE2 REMARK 480 GLU B 13 CG CD OE1 OE2 REMARK 480 SER B 16 OG REMARK 480 LYS B 22 CG CD CE NZ REMARK 480 LYS B 26 CG CD CE NZ REMARK 480 GLU B 33 CG CD OE1 OE2 REMARK 480 ARG B 57 CD NE CZ NH1 NH2 REMARK 480 ARG B 64 NH1 REMARK 480 GLU B 85 CG CD OE1 OE2 REMARK 480 LYS B 99 CG CD CE NZ REMARK 480 LYS B 165 CG CD CE NZ REMARK 480 ASN B 181 OD1 REMARK 480 GLU B 183 CG CD OE1 OE2 REMARK 480 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 192 CG CD CE NZ REMARK 480 LYS B 199 CG CD CE NZ REMARK 480 LYS B 233 CG CD CE NZ REMARK 480 LYS B 234 CG CD CE NZ REMARK 480 LYS B 249 CD CE NZ REMARK 480 GLU B 257 CB CG CD OE1 OE2 REMARK 480 ARG B 282 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 300 CG CD CE NZ REMARK 480 ARG B 313 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 317 CG CD CE NZ REMARK 480 ARG B 322 CD NE CZ NH1 NH2 REMARK 480 LYS B 330 CG CD CE NZ REMARK 480 LYS B 331 CG CD CE NZ REMARK 480 ARG B 334 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 338 CB CG CD CE NZ REMARK 480 LEU B 344 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 210 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 18 -60.30 -106.38 REMARK 500 ASN A 107 68.35 -156.19 REMARK 500 HIS A 108 -163.09 -118.41 REMARK 500 GLU A 139 -50.54 -128.10 REMARK 500 LYS A 192 63.02 -166.74 REMARK 500 ILE A 287 1.50 -64.37 REMARK 500 SER A 295 -15.27 95.52 REMARK 500 ASN B 107 69.24 -152.37 REMARK 500 HIS B 108 -169.29 -125.12 REMARK 500 GLU B 180 -38.93 -130.15 REMARK 500 GLU B 191 -22.63 -153.95 REMARK 500 LYS B 192 46.11 -145.43 REMARK 500 SER B 295 -14.73 99.04 REMARK 500 PHE B 328 2.36 -68.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 348 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 HIS A 108 NE2 107.0 REMARK 620 3 CYS A 114 SG 105.9 101.4 REMARK 620 4 CYS A 117 SG 107.2 116.3 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 348 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 106 SG REMARK 620 2 HIS B 108 NE2 103.3 REMARK 620 3 CYS B 114 SG 110.3 101.8 REMARK 620 4 CYS B 117 SG 115.5 109.9 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 353 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DD9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE DNAG CATALYTIC CORE REMARK 900 RELATED ID: 1DDE RELATED DB: PDB REMARK 900 STRUCTURE OF THE DNAG CATALYTIC CORE REMARK 900 RELATED ID: 1EQN RELATED DB: PDB REMARK 900 E.COLI PRIMASE CATALYTIC CORE DBREF 1G71 A 1 347 UNP Q9P9H1 PRIS_PYRFU 1 347 DBREF 1G71 B 1 347 UNP Q9P9H1 PRIS_PYRFU 1 347 SEQRES 1 A 347 MET LEU MET ARG GLU VAL THR LYS GLU GLU ARG SER GLU SEQRES 2 A 347 PHE TYR SER LYS GLU TRP SER ALA LYS LYS ILE PRO LYS SEQRES 3 A 347 PHE ILE VAL ASP THR LEU GLU SER ARG GLU PHE GLY PHE SEQRES 4 A 347 ASP HIS ASN GLY GLU GLY PRO SER ASP ARG LYS ASN GLN SEQRES 5 A 347 TYR SER ASP ILE ARG ASP LEU GLU ASP TYR ILE ARG ALA SEQRES 6 A 347 THR SER PRO TYR ALA VAL TYR SER SER VAL ALA PHE TYR SEQRES 7 A 347 GLU ASN PRO ARG GLU MET GLU GLY TRP ARG GLY ALA GLU SEQRES 8 A 347 LEU VAL PHE ASP ILE ASP ALA LYS ASP LEU PRO LEU LYS SEQRES 9 A 347 ARG CYS ASN HIS GLU PRO GLY THR VAL CYS PRO ILE CYS SEQRES 10 A 347 LEU GLU ASP ALA LYS GLU LEU ALA LYS ASP THR LEU ILE SEQRES 11 A 347 ILE LEU ARG GLU GLU LEU GLY PHE GLU ASN ILE HIS VAL SEQRES 12 A 347 VAL TYR SER GLY ARG GLY TYR HIS ILE ARG ILE LEU ASP SEQRES 13 A 347 GLU TRP ALA LEU GLN LEU ASP SER LYS SER ARG GLU ARG SEQRES 14 A 347 ILE LEU ALA PHE ILE SER ALA SER GLU ILE GLU ASN VAL SEQRES 15 A 347 GLU GLU PHE ARG ARG PHE LEU LEU GLU LYS ARG GLY TRP SEQRES 16 A 347 PHE VAL LEU LYS HIS GLY TYR PRO ARG VAL PHE ARG LEU SEQRES 17 A 347 ARG LEU GLY TYR PHE ILE LEU ARG VAL ASN VAL PRO HIS SEQRES 18 A 347 LEU LEU SER ILE GLY ILE ARG ARG ASN ILE ALA LYS LYS SEQRES 19 A 347 ILE LEU ASP HIS LYS GLU GLU ILE TYR GLU GLY PHE VAL SEQRES 20 A 347 ARG LYS ALA ILE LEU ALA SER PHE PRO GLU GLY VAL GLY SEQRES 21 A 347 ILE GLU SER MET ALA LYS LEU PHE ALA LEU SER THR ARG SEQRES 22 A 347 PHE SER LYS ALA TYR PHE ASP GLY ARG VAL THR VAL ASP SEQRES 23 A 347 ILE LYS ARG ILE LEU ARG LEU PRO SER THR LEU HIS SER SEQRES 24 A 347 LYS VAL GLY LEU ILE ALA THR TYR VAL GLY THR LYS GLU SEQRES 25 A 347 ARG GLU VAL MET LYS PHE ASN PRO PHE ARG HIS ALA VAL SEQRES 26 A 347 PRO LYS PHE ARG LYS LYS GLU VAL ARG GLU ALA TYR LYS SEQRES 27 A 347 LEU TRP ARG GLU SER LEU GLU TYR GLU SEQRES 1 B 347 MET LEU MET ARG GLU VAL THR LYS GLU GLU ARG SER GLU SEQRES 2 B 347 PHE TYR SER LYS GLU TRP SER ALA LYS LYS ILE PRO LYS SEQRES 3 B 347 PHE ILE VAL ASP THR LEU GLU SER ARG GLU PHE GLY PHE SEQRES 4 B 347 ASP HIS ASN GLY GLU GLY PRO SER ASP ARG LYS ASN GLN SEQRES 5 B 347 TYR SER ASP ILE ARG ASP LEU GLU ASP TYR ILE ARG ALA SEQRES 6 B 347 THR SER PRO TYR ALA VAL TYR SER SER VAL ALA PHE TYR SEQRES 7 B 347 GLU ASN PRO ARG GLU MET GLU GLY TRP ARG GLY ALA GLU SEQRES 8 B 347 LEU VAL PHE ASP ILE ASP ALA LYS ASP LEU PRO LEU LYS SEQRES 9 B 347 ARG CYS ASN HIS GLU PRO GLY THR VAL CYS PRO ILE CYS SEQRES 10 B 347 LEU GLU ASP ALA LYS GLU LEU ALA LYS ASP THR LEU ILE SEQRES 11 B 347 ILE LEU ARG GLU GLU LEU GLY PHE GLU ASN ILE HIS VAL SEQRES 12 B 347 VAL TYR SER GLY ARG GLY TYR HIS ILE ARG ILE LEU ASP SEQRES 13 B 347 GLU TRP ALA LEU GLN LEU ASP SER LYS SER ARG GLU ARG SEQRES 14 B 347 ILE LEU ALA PHE ILE SER ALA SER GLU ILE GLU ASN VAL SEQRES 15 B 347 GLU GLU PHE ARG ARG PHE LEU LEU GLU LYS ARG GLY TRP SEQRES 16 B 347 PHE VAL LEU LYS HIS GLY TYR PRO ARG VAL PHE ARG LEU SEQRES 17 B 347 ARG LEU GLY TYR PHE ILE LEU ARG VAL ASN VAL PRO HIS SEQRES 18 B 347 LEU LEU SER ILE GLY ILE ARG ARG ASN ILE ALA LYS LYS SEQRES 19 B 347 ILE LEU ASP HIS LYS GLU GLU ILE TYR GLU GLY PHE VAL SEQRES 20 B 347 ARG LYS ALA ILE LEU ALA SER PHE PRO GLU GLY VAL GLY SEQRES 21 B 347 ILE GLU SER MET ALA LYS LEU PHE ALA LEU SER THR ARG SEQRES 22 B 347 PHE SER LYS ALA TYR PHE ASP GLY ARG VAL THR VAL ASP SEQRES 23 B 347 ILE LYS ARG ILE LEU ARG LEU PRO SER THR LEU HIS SER SEQRES 24 B 347 LYS VAL GLY LEU ILE ALA THR TYR VAL GLY THR LYS GLU SEQRES 25 B 347 ARG GLU VAL MET LYS PHE ASN PRO PHE ARG HIS ALA VAL SEQRES 26 B 347 PRO LYS PHE ARG LYS LYS GLU VAL ARG GLU ALA TYR LYS SEQRES 27 B 347 LEU TRP ARG GLU SER LEU GLU TYR GLU HET ZN A 348 1 HET CL A 349 1 HET CL A 350 1 HET CL A 351 1 HET SO4 A 352 5 HET SO4 A 353 5 HET ZN B 348 1 HET CL B 349 1 HET CL B 350 1 HET CL B 351 1 HET SO4 B 352 5 HET SO4 B 353 5 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 6(CL 1-) FORMUL 7 SO4 4(O4 S 2-) FORMUL 15 HOH *338(H2 O) HELIX 1 1 THR A 7 GLU A 18 1 12 HELIX 2 2 SER A 20 ILE A 24 5 5 HELIX 3 3 PRO A 25 ASP A 30 1 6 HELIX 4 4 THR A 31 ARG A 35 5 5 HELIX 5 5 ASP A 55 SER A 67 1 13 HELIX 6 6 PRO A 81 MET A 84 5 4 HELIX 7 7 CYS A 114 GLU A 135 1 22 HELIX 8 8 ASP A 156 LEU A 160 5 5 HELIX 9 9 ASP A 163 SER A 175 1 13 HELIX 10 10 ASN A 181 LYS A 192 1 12 HELIX 11 11 ARG A 193 LEU A 198 5 6 HELIX 12 12 GLY A 201 LEU A 215 1 15 HELIX 13 13 ASN A 218 SER A 224 1 7 HELIX 14 14 ARG A 228 HIS A 238 1 11 HELIX 15 15 HIS A 238 PHE A 246 1 9 HELIX 16 16 GLY A 260 LYS A 276 1 17 HELIX 17 17 ASP A 280 ASP A 286 1 7 HELIX 18 18 LYS A 311 PHE A 318 1 8 HELIX 19 19 ASN A 319 ALA A 324 1 6 HELIX 20 20 PRO A 326 PHE A 328 5 3 HELIX 21 21 ARG A 329 LEU A 344 1 16 HELIX 22 22 THR B 7 GLU B 18 1 12 HELIX 23 23 SER B 20 ILE B 24 5 5 HELIX 24 24 PRO B 25 ASP B 30 1 6 HELIX 25 25 THR B 31 ARG B 35 5 5 HELIX 26 26 ASP B 55 SER B 67 1 13 HELIX 27 27 PRO B 81 MET B 84 5 4 HELIX 28 28 CYS B 114 GLU B 135 1 22 HELIX 29 29 ASP B 156 LEU B 160 5 5 HELIX 30 30 ASP B 163 SER B 175 1 13 HELIX 31 31 ASN B 181 LEU B 190 1 10 HELIX 32 32 GLU B 191 GLU B 191 5 1 HELIX 33 33 LYS B 192 LEU B 198 5 7 HELIX 34 34 GLY B 201 LEU B 215 1 15 HELIX 35 35 ASN B 218 ILE B 225 1 8 HELIX 36 36 ARG B 228 HIS B 238 1 11 HELIX 37 37 HIS B 238 PHE B 246 1 9 HELIX 38 38 GLY B 260 LYS B 276 1 17 HELIX 39 39 ASP B 280 ASP B 286 1 7 HELIX 40 40 LYS B 311 PHE B 318 1 8 HELIX 41 41 ASN B 319 ALA B 324 1 6 HELIX 42 42 PRO B 326 PHE B 328 5 3 HELIX 43 43 ARG B 329 LEU B 344 1 16 SHEET 1 A 4 ASP A 48 ASN A 51 0 SHEET 2 A 4 PHE A 37 ASP A 40 -1 N PHE A 37 O ASN A 51 SHEET 3 A 4 ALA A 70 SER A 74 -1 O ALA A 70 N ASP A 40 SHEET 4 A 4 ILE A 290 ARG A 292 -1 N LEU A 291 O SER A 73 SHEET 1 B 2 ALA A 76 ASN A 80 0 SHEET 2 B 2 GLU A 85 ALA A 90 -1 O GLU A 85 N ASN A 80 SHEET 1 C 4 LEU A 92 ASP A 97 0 SHEET 2 C 4 GLY A 149 ILE A 154 -1 O TYR A 150 N ILE A 96 SHEET 3 C 4 ILE A 141 TYR A 145 -1 O HIS A 142 N ARG A 153 SHEET 4 C 4 THR A 306 GLY A 309 -1 O THR A 306 N TYR A 145 SHEET 1 D 2 LEU A 297 HIS A 298 0 SHEET 2 D 2 LEU A 303 ILE A 304 -1 O LEU A 303 N HIS A 298 SHEET 1 E 4 ASP B 48 ASN B 51 0 SHEET 2 E 4 PHE B 37 ASP B 40 -1 N PHE B 37 O ASN B 51 SHEET 3 E 4 ALA B 70 SER B 74 -1 O ALA B 70 N ASP B 40 SHEET 4 E 4 ILE B 290 ARG B 292 -1 N LEU B 291 O SER B 73 SHEET 1 F 2 ALA B 76 ASN B 80 0 SHEET 2 F 2 GLU B 85 ALA B 90 -1 O GLU B 85 N ASN B 80 SHEET 1 G 4 LEU B 92 ASP B 97 0 SHEET 2 G 4 GLY B 149 ILE B 154 -1 O TYR B 150 N ILE B 96 SHEET 3 G 4 ILE B 141 TYR B 145 -1 O HIS B 142 N ARG B 153 SHEET 4 G 4 THR B 306 GLY B 309 -1 O THR B 306 N TYR B 145 SHEET 1 H 2 LEU B 297 HIS B 298 0 SHEET 2 H 2 LEU B 303 ILE B 304 -1 O LEU B 303 N HIS B 298 LINK SG CYS A 106 ZN ZN A 348 1555 1555 2.40 LINK NE2 HIS A 108 ZN ZN A 348 1555 1555 2.21 LINK SG CYS A 114 ZN ZN A 348 1555 1555 2.32 LINK SG CYS A 117 ZN ZN A 348 1555 1555 2.31 LINK SG CYS B 106 ZN ZN B 348 1555 1555 2.29 LINK NE2 HIS B 108 ZN ZN B 348 1555 1555 2.15 LINK SG CYS B 114 ZN ZN B 348 1555 1555 2.19 LINK SG CYS B 117 ZN ZN B 348 1555 1555 2.39 SITE 1 AC1 4 CYS A 106 HIS A 108 CYS A 114 CYS A 117 SITE 1 AC2 4 CYS B 106 HIS B 108 CYS B 114 CYS B 117 SITE 1 AC3 2 ARG A 313 SER B 47 SITE 1 AC4 1 GLY B 86 SITE 1 AC5 1 GLY A 86 SITE 1 AC6 2 TYR A 202 ARG B 229 SITE 1 AC7 2 LYS A 311 ARG A 313 SITE 1 AC8 8 LYS A 99 ARG A 148 ARG A 292 HIS A 298 SITE 2 AC8 8 HOH A 378 HOH A 452 HOH A 456 HOH A 514 SITE 1 AC9 4 ARG B 148 ARG B 292 HIS B 298 HOH B 439 SITE 1 BC1 2 ARG A 148 HOH A 541 SITE 1 BC2 1 ARG B 148 CRYST1 129.883 136.326 61.877 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016161 0.00000