HEADER SIGNAL TRANSDUCTION PROTEIN 12-AUG-94 1GBR TITLE ORIENTATION OF PEPTIDE FRAGMENTS FROM SOS PROTEINS BOUND TO THE N- TITLE 2 TERMINAL SH3 DOMAIN OF GRB2 DETERMINED BY NMR SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SOS-A PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MOUSE GRB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGTX-2T (PHARMACIA); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090 KEYWDS SIGNAL TRANSDUCTION PROTEIN EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR M.WITTEKIND,C.MAPELLI,B.T.FARMER,K.-L.SUEN,V.GOLDFARB,J.TSAO, AUTHOR 2 T.LAVOIE,M.BARBACID,C.A.MEYERS,L.MUELLER REVDAT 4 23-FEB-22 1GBR 1 REMARK SEQADV REVDAT 3 24-FEB-09 1GBR 1 VERSN REVDAT 2 01-APR-03 1GBR 1 JRNL REVDAT 1 26-JAN-95 1GBR 0 JRNL AUTH M.WITTEKIND,C.MAPELLI,B.T.FARMER 2ND.,K.L.SUEN,V.GOLDFARB, JRNL AUTH 2 J.TSAO,T.LAVOIE,M.BARBACID,C.A.MEYERS,L.MUELLER JRNL TITL ORIENTATION OF PEPTIDE FRAGMENTS FROM SOS PROTEINS BOUND TO JRNL TITL 2 THE N-TERMINAL SH3 DOMAIN OF GRB2 DETERMINED BY NMR JRNL TITL 3 SPECTROSCOPY. JRNL REF BIOCHEMISTRY V. 33 13531 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 7947763 JRNL DOI 10.1021/BI00250A004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.-L.SUEN,X.R.BUSTELO,T.PAWSON,M.BARBACID REMARK 1 TITL MOLECULAR CLONING OF THE MOUSE GRB2 GENE: DIFFERENTIAL REMARK 1 TITL 2 INTERACTION OF THE GRB2 ADAPTOR PROTEIN WITH EPIDERMAL REMARK 1 TITL 3 GROWTH FACTOR AND NERVE GROWTH FACTOR RECEPTORS REMARK 1 REF MOL.CELL.BIOL. V. 13 5500 1993 REMARK 1 REFN ISSN 0270-7306 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.BOWTELL,P.FU,M.SIMON,P.SENIOR REMARK 1 TITL IDENTIFICATION OF MURINE HOMOLOGUES OF THE DROSOPHILA SON OF REMARK 1 TITL 2 SEVENLESS GENE: POTENTIAL ACTIVATORS OF RAS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 6511 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GBR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173506. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 2 GLY A -8 N GLY A -8 CA 0.099 REMARK 500 3 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 4 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 5 GLY A -8 N GLY A -8 CA 0.099 REMARK 500 6 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 7 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 8 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 9 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 10 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 11 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 12 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 13 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 14 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 15 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 16 GLY A -8 N GLY A -8 CA 0.102 REMARK 500 17 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 18 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 19 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 20 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 21 GLY A -8 N GLY A -8 CA 0.099 REMARK 500 22 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 23 GLY A -8 N GLY A -8 CA 0.099 REMARK 500 24 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 25 GLY A -8 N GLY A -8 CA 0.101 REMARK 500 26 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 27 GLY A -8 N GLY A -8 CA 0.100 REMARK 500 28 GLY A -8 N GLY A -8 CA 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 TYR A 52 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 4 TYR A 52 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 7 TYR A 52 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 8 TYR A 52 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 9 TYR A 52 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 24 TYR A 52 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 26 TYR A 52 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 29 THR A 12 OG1 - CB - CG2 ANGL. DEV. = -14.6 DEGREES REMARK 500 29 THR A 12 CA - CB - OG1 ANGL. DEV. = 21.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -3 -80.53 -100.10 REMARK 500 1 VAL A -2 84.05 57.53 REMARK 500 1 SER A 0 -177.21 -177.16 REMARK 500 1 PHE A 9 175.01 171.96 REMARK 500 1 CYS A 32 -166.74 64.90 REMARK 500 1 ASP A 33 167.59 -43.94 REMARK 500 1 ASN A 42 22.71 41.89 REMARK 500 1 PRO A 57 -165.27 -77.85 REMARK 500 1 PHE A 61 165.11 59.73 REMARK 500 1 PRO B 2 -80.84 -78.40 REMARK 500 1 LEU B 3 128.77 -170.58 REMARK 500 1 PRO B 5 -155.50 -81.85 REMARK 500 1 LEU B 7 67.37 60.01 REMARK 500 1 THR B 11 -66.47 -153.88 REMARK 500 1 LYS B 13 -164.98 -109.91 REMARK 500 2 ARG A -6 94.30 60.42 REMARK 500 2 ALA A -4 34.59 -158.06 REMARK 500 2 SER A -3 171.04 60.31 REMARK 500 2 VAL A 27 105.62 -59.63 REMARK 500 2 GLU A 30 -167.76 -101.13 REMARK 500 2 GLU A 31 -162.77 68.96 REMARK 500 2 CYS A 32 -158.26 77.55 REMARK 500 2 ASP A 33 151.33 -30.59 REMARK 500 2 ASN A 35 17.33 -159.48 REMARK 500 2 ASN A 42 21.39 42.17 REMARK 500 2 LYS A 50 -17.90 -46.68 REMARK 500 2 TYR A 52 30.10 -96.10 REMARK 500 2 PRO A 59 -75.26 -77.51 REMARK 500 2 VAL A 63 163.60 59.85 REMARK 500 2 THR A 64 -49.76 -147.14 REMARK 500 2 LEU B 4 -56.66 172.83 REMARK 500 2 LYS B 6 151.46 63.69 REMARK 500 2 LYS B 10 109.73 60.16 REMARK 500 3 SER A -7 83.78 -174.14 REMARK 500 3 ARG A -5 -69.36 -155.71 REMARK 500 3 SER A 0 -178.57 -64.27 REMARK 500 3 PHE A 9 174.61 171.69 REMARK 500 3 ALA A 13 179.40 178.94 REMARK 500 3 ASP A 15 26.57 -143.00 REMARK 500 3 GLU A 31 -167.83 66.27 REMARK 500 3 CYS A 32 -168.30 44.07 REMARK 500 3 ASP A 33 164.12 59.40 REMARK 500 3 ASN A 35 36.72 74.22 REMARK 500 3 ALA A 39 -174.28 -170.03 REMARK 500 3 ASN A 42 23.13 42.26 REMARK 500 3 PRO A 57 -165.82 -78.20 REMARK 500 3 PRO A 59 -76.31 -78.29 REMARK 500 3 PHE A 61 -82.90 -66.86 REMARK 500 3 VAL A 63 48.89 -153.47 REMARK 500 3 THR A 64 97.70 -162.91 REMARK 500 REMARK 500 THIS ENTRY HAS 515 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A -6 0.32 SIDE CHAIN REMARK 500 1 ARG A -5 0.27 SIDE CHAIN REMARK 500 1 ARG A 21 0.20 SIDE CHAIN REMARK 500 1 ARG B 14 0.29 SIDE CHAIN REMARK 500 2 ARG A -6 0.27 SIDE CHAIN REMARK 500 2 ARG A -5 0.26 SIDE CHAIN REMARK 500 2 ARG A 21 0.31 SIDE CHAIN REMARK 500 2 ARG B 14 0.32 SIDE CHAIN REMARK 500 3 ARG A -6 0.23 SIDE CHAIN REMARK 500 3 ARG A -5 0.28 SIDE CHAIN REMARK 500 3 ARG A 21 0.32 SIDE CHAIN REMARK 500 3 ARG B 14 0.24 SIDE CHAIN REMARK 500 4 ARG A -6 0.30 SIDE CHAIN REMARK 500 4 ARG A -5 0.32 SIDE CHAIN REMARK 500 4 ARG A 21 0.20 SIDE CHAIN REMARK 500 4 ARG B 14 0.26 SIDE CHAIN REMARK 500 5 ARG A -6 0.31 SIDE CHAIN REMARK 500 5 ARG A -5 0.25 SIDE CHAIN REMARK 500 5 ARG A 21 0.18 SIDE CHAIN REMARK 500 5 ARG B 14 0.31 SIDE CHAIN REMARK 500 6 ARG A -6 0.24 SIDE CHAIN REMARK 500 6 ARG A -5 0.31 SIDE CHAIN REMARK 500 6 ARG A 21 0.24 SIDE CHAIN REMARK 500 6 ARG B 14 0.21 SIDE CHAIN REMARK 500 7 ARG A -6 0.27 SIDE CHAIN REMARK 500 7 ARG A -5 0.31 SIDE CHAIN REMARK 500 7 ARG A 21 0.30 SIDE CHAIN REMARK 500 7 ARG B 14 0.32 SIDE CHAIN REMARK 500 8 ARG A -6 0.29 SIDE CHAIN REMARK 500 8 ARG A -5 0.23 SIDE CHAIN REMARK 500 8 ARG A 21 0.28 SIDE CHAIN REMARK 500 8 ARG B 14 0.24 SIDE CHAIN REMARK 500 9 ARG A -6 0.32 SIDE CHAIN REMARK 500 9 ARG A -5 0.22 SIDE CHAIN REMARK 500 9 ARG A 21 0.25 SIDE CHAIN REMARK 500 9 ARG B 14 0.31 SIDE CHAIN REMARK 500 10 ARG A -6 0.31 SIDE CHAIN REMARK 500 10 ARG A -5 0.32 SIDE CHAIN REMARK 500 10 ARG A 21 0.21 SIDE CHAIN REMARK 500 10 ARG B 14 0.22 SIDE CHAIN REMARK 500 11 ARG A -6 0.30 SIDE CHAIN REMARK 500 11 ARG A -5 0.32 SIDE CHAIN REMARK 500 11 ARG A 21 0.30 SIDE CHAIN REMARK 500 11 ARG B 14 0.31 SIDE CHAIN REMARK 500 12 ARG A -6 0.22 SIDE CHAIN REMARK 500 12 ARG A -5 0.30 SIDE CHAIN REMARK 500 12 ARG A 21 0.31 SIDE CHAIN REMARK 500 12 ARG B 14 0.28 SIDE CHAIN REMARK 500 13 ARG A -6 0.28 SIDE CHAIN REMARK 500 13 ARG A -5 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 116 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1GBR A 1 61 UNP Q60631 GRB2_MOUSE 1 61 DBREF 1GBR B 1 15 UNP Q02384 SOS2_MOUSE 1264 1278 SEQADV 1GBR GLU A 60 UNP Q60631 TRP 60 CONFLICT SEQRES 1 A 74 GLY SER ARG ARG ALA SER VAL GLY SER MET GLU ALA ILE SEQRES 2 A 74 ALA LYS TYR ASP PHE LYS ALA THR ALA ASP ASP GLU LEU SEQRES 3 A 74 SER PHE LYS ARG GLY ASP ILE LEU LYS VAL LEU ASN GLU SEQRES 4 A 74 GLU CYS ASP GLN ASN TRP TYR LYS ALA GLU LEU ASN GLY SEQRES 5 A 74 LYS ASP GLY PHE ILE PRO LYS ASN TYR ILE GLU MET LYS SEQRES 6 A 74 PRO HIS PRO GLU PHE ILE VAL THR ASP SEQRES 1 B 15 SER PRO LEU LEU PRO LYS LEU PRO PRO LYS THR TYR LYS SEQRES 2 B 15 ARG GLU HELIX 1 1 ASN A 51 ILE A 53 5 3 SHEET 1 A 4 MET A 1 ALA A 3 0 SHEET 2 A 4 LEU A 25 ASN A 29 -1 N LEU A 25 O ALA A 3 SHEET 3 A 4 TRP A 36 LEU A 41 -1 N LYS A 38 O ASN A 29 SHEET 4 A 4 LYS A 44 PRO A 49 -1 N LYS A 44 O LEU A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1