HEADER RIBOSOME 19-OCT-00 1GE9 TITLE SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME RECYCLING FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS THREE-HELIX BUNDLE, RIBOSOME EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR T.YOSHIDA,S.UCHIYAMA,H.NAKANO,H.KASHIMORI,H.KIJIMA,T.OHSHIMA, AUTHOR 2 Y.SAIHARA,T.ISHINO,T.SHIMAHARA,T.YOSHIDA,K.YOKOSE,T.OHKUBO,A.KAJI, AUTHOR 3 Y.KOBAYASHI REVDAT 6 27-DEC-23 1GE9 1 REMARK REVDAT 5 23-FEB-22 1GE9 1 REMARK REVDAT 4 24-FEB-09 1GE9 1 VERSN REVDAT 3 01-APR-03 1GE9 1 JRNL REVDAT 2 21-JAN-03 1GE9 1 REMARK REVDAT 1 16-MAY-01 1GE9 0 JRNL AUTH T.YOSHIDA,S.UCHIYAMA,H.NAKANO,H.KASHIMORI,H.KIJIMA, JRNL AUTH 2 T.OHSHIMA,Y.SAIHARA,T.ISHINO,H.SHIMAHARA,T.YOSHIDA,K.YOKOSE, JRNL AUTH 3 T.OHKUBO,A.KAJI,Y.KOBAYASHI JRNL TITL SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR FROM JRNL TITL 2 AQUIFEX AEOLICUS. JRNL REF BIOCHEMISTRY V. 40 2387 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11327859 JRNL DOI 10.1021/BI002474G REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9, CNS 0.9 REMARK 3 AUTHORS : BRUNGER (CNS), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GE9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000005069. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5MM RIBOSOME RECYCLING FACTOR REMARK 210 U-15N; 20MM ACETATE BUFFER, 20MM REMARK 210 NACL; 93% D2O, 7% D2O; 0.5MM REMARK 210 RIBOSOME RECYCLING FACTOR U-15N, REMARK 210 13C; 20MM ACETATE BUFFER, 20MM REMARK 210 NACL; 93% D2O, 7% D2O; 0.5MM REMARK 210 RIBOSOME RECYCLING FACTOR U-15N, REMARK 210 13C; 20MM ACETATE BUFFER, 20MM REMARK 210 NACL; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; REMARK 210 RELAXATION TIME MEASUREMENTS; REMARK 210 TRIPLE RESONANCE EXPERIMENTS FOR REMARK 210 ASSIGNMENTS; QUANTITATIVE J REMARK 210 CORRELATION FOR COUPLING REMARK 210 CONSTANTS; 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 177 H ILE A 181 1.51 REMARK 500 O ILE A 81 H ILE A 85 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 -157.54 -130.32 REMARK 500 1 VAL A 40 -106.08 -80.77 REMARK 500 1 GLU A 41 -21.03 79.09 REMARK 500 1 ILE A 43 65.72 -66.84 REMARK 500 1 ILE A 54 37.97 -91.79 REMARK 500 1 THR A 59 135.08 -174.05 REMARK 500 1 HIS A 65 -57.54 68.73 REMARK 500 1 ASN A 98 20.07 -147.49 REMARK 500 1 LEU A 107 85.72 -63.75 REMARK 500 1 THR A 108 -169.05 -74.60 REMARK 500 1 GLU A 145 8.89 58.01 REMARK 500 2 LYS A 3 -50.78 -161.57 REMARK 500 2 ARG A 31 82.92 -61.47 REMARK 500 2 LEU A 39 -45.04 -22.93 REMARK 500 2 VAL A 40 -75.96 -77.55 REMARK 500 2 GLU A 41 -40.54 79.30 REMARK 500 2 ILE A 43 80.54 -53.29 REMARK 500 2 LYS A 44 87.01 -59.29 REMARK 500 2 ILE A 54 44.47 -94.33 REMARK 500 2 ASN A 98 23.17 -155.12 REMARK 500 2 GLU A 145 12.13 52.66 REMARK 500 3 LYS A 3 -74.27 -159.89 REMARK 500 3 ARG A 31 81.03 -61.51 REMARK 500 3 LEU A 39 -43.19 -28.93 REMARK 500 3 GLU A 41 -70.92 132.40 REMARK 500 3 GLU A 42 25.20 -161.56 REMARK 500 3 ILE A 43 46.35 28.46 REMARK 500 3 LYS A 44 94.80 -44.38 REMARK 500 3 LEU A 57 -53.16 -132.40 REMARK 500 3 ASN A 98 24.29 -156.74 REMARK 500 3 GLU A 145 -24.68 68.39 REMARK 500 3 SER A 183 -75.38 -77.24 REMARK 500 4 ARG A 31 85.17 -51.75 REMARK 500 4 LEU A 39 -48.29 -26.92 REMARK 500 4 ILE A 43 31.41 38.75 REMARK 500 4 LYS A 44 79.89 4.22 REMARK 500 4 ILE A 54 -100.88 -60.75 REMARK 500 4 LYS A 55 -60.53 67.34 REMARK 500 4 HIS A 65 39.34 -69.99 REMARK 500 4 VAL A 72 -172.01 -63.13 REMARK 500 4 ASN A 98 23.43 -152.81 REMARK 500 4 GLU A 145 10.52 54.21 REMARK 500 4 SER A 183 -79.67 -90.56 REMARK 500 5 LEU A 39 -49.00 -28.49 REMARK 500 5 VAL A 40 -106.33 -75.12 REMARK 500 5 GLU A 41 -21.72 79.33 REMARK 500 5 ILE A 54 33.09 -89.07 REMARK 500 5 HIS A 65 -56.25 66.62 REMARK 500 5 ASN A 98 18.50 -147.63 REMARK 500 5 LEU A 107 96.80 -48.01 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1GE9 A 1 184 UNP O66928 RRF_AQUAE 1 184 SEQRES 1 A 184 MET ILE LYS GLU LEU GLU ASP ILE PHE LYS GLU ALA GLU SEQRES 2 A 184 LYS ASP MET LYS LYS ALA VAL GLU TYR TYR LYS ASN GLU SEQRES 3 A 184 ILE ALA GLY LEU ARG THR SER ARG ALA SER THR ALA LEU SEQRES 4 A 184 VAL GLU GLU ILE LYS VAL GLU TYR TYR GLY SER LYS VAL SEQRES 5 A 184 PRO ILE LYS GLN LEU GLY THR ILE SER VAL PRO GLU HIS SEQRES 6 A 184 ASN GLN ILE VAL ILE GLN VAL TRP ASP GLN ASN ALA VAL SEQRES 7 A 184 PRO ALA ILE GLU LYS ALA ILE ARG GLU GLU LEU ASN LEU SEQRES 8 A 184 ASN PRO THR VAL GLN GLY ASN VAL ILE ARG VAL THR LEU SEQRES 9 A 184 PRO PRO LEU THR GLU GLU ARG ARG ARG GLU LEU VAL ARG SEQRES 10 A 184 LEU LEU HIS LYS ILE THR GLU GLU ALA ARG VAL ARG VAL SEQRES 11 A 184 ARG ASN VAL ARG ARG GLU ALA LYS GLU MET ILE GLU GLU SEQRES 12 A 184 LEU GLU GLY ILE SER GLU ASP GLU LYS LYS ARG ALA LEU SEQRES 13 A 184 GLU ARG LEU GLN LYS LEU THR ASP LYS TYR ILE ASP GLU SEQRES 14 A 184 ILE ASN LYS LEU MET GLU ALA LYS GLU LYS GLU ILE MET SEQRES 15 A 184 SER VAL HELIX 1 1 GLU A 4 LEU A 30 1 27 HELIX 2 2 ASN A 76 ASN A 90 1 15 HELIX 3 3 THR A 108 LEU A 144 1 37 HELIX 4 4 SER A 148 MET A 182 1 35 SHEET 1 A 2 VAL A 45 GLU A 46 0 SHEET 2 A 2 LYS A 51 VAL A 52 -1 O VAL A 52 N VAL A 45 SHEET 1 B 4 THR A 59 SER A 61 0 SHEET 2 B 4 GLN A 67 GLN A 71 -1 O VAL A 69 N SER A 61 SHEET 3 B 4 VAL A 99 THR A 103 -1 N ILE A 100 O ILE A 70 SHEET 4 B 4 THR A 94 GLN A 96 -1 N THR A 94 O ARG A 101 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1