HEADER IMMUNOGLOBULIN 19-JUL-93 1GGB TITLE MAJOR ANTIGEN-INDUCED DOMAIN REARRANGEMENTS IN AN ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: ASW; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 STRAIN: ASW KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR M.TAKIMOTO-KAMIMURA,I.A.WILSON REVDAT 3 25-AUG-09 1GGB 1 SOURCE REVDAT 2 24-FEB-09 1GGB 1 VERSN REVDAT 1 31-OCT-93 1GGB 0 JRNL AUTH R.L.STANFIELD,M.TAKIMOTO-KAMIMURA,J.M.RINI, JRNL AUTH 2 A.T.PROFY,I.A.WILSON JRNL TITL MAJOR ANTIGEN-INDUCED DOMAIN REARRANGEMENTS IN AN JRNL TITL 2 ANTIBODY. JRNL REF STRUCTURE V. 1 83 1993 JRNL REFN ISSN 0969-2126 JRNL PMID 8069628 JRNL DOI 10.1016/0969-2126(93)90024-B REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.RINI,R.L.STANFIELD,E.A.STURA,P.A.SALINAS, REMARK 1 AUTH 2 A.T.PROFY,I.A.WILSON REMARK 1 TITL CRYSTAL STRUCTURE OF A HUMAN IMMUNODEFICIENCY VIRUS REMARK 1 TITL 2 TYPE 1 NEUTRALIZING ANTIBODY, 50.1, IN COMPLEX WITH REMARK 1 TITL 3 ITS V3 LOOP PEPTIDE ANTIGEN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 90 6325 1993 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.A.STURA,R.L.STANFIELD,G.G.FIESER,S.SILVER, REMARK 1 AUTH 2 M.ROGUSKA,L.M.HINCAPIE,H.K.B.SIMMERMAN,A.T.PROFY, REMARK 1 AUTH 3 I.A.WILSON REMARK 1 TITL CRYSTALLIZATION, SEQUENCE, AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC DATA FOR AN ANTIPEPTIDE FAB 50.1 REMARK 1 TITL 3 AND PEPTIDE COMPLEXES WITH THE PRINCIPAL REMARK 1 TITL 4 NEUTRALIZING DETERMINANT OF HIV-1 GP120 REMARK 1 REF PROTEINS V. 14 499 1992 REMARK 1 REFN ISSN 0887-3585 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 3.90 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GGB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.75000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.75000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.75000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER L 162 CA SER L 162 CB -0.106 REMARK 500 HIS L 198 NE2 HIS L 198 CD2 -0.068 REMARK 500 PHE H 52 CA PHE H 52 CB -0.157 REMARK 500 SER H 120 CA SER H 120 CB -0.120 REMARK 500 CYS H 142 CA CYS H 142 CB -0.097 REMARK 500 HIS H 212 NE2 HIS H 212 CD2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP L 35 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP L 35 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR L 49 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG L 50 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG L 50 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 PRO L 113 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 TRP L 148 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP L 148 CG - CD1 - NE1 ANGL. DEV. = -7.9 DEGREES REMARK 500 TRP L 148 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG L 155 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG L 155 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP L 163 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP L 163 CG - CD1 - NE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP L 163 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR L 186 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG L 188 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 CYS L 194 CA - CB - SG ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG L 211 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG L 211 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 GLN H 3 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU H 12 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 TYR H 32 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP H 36 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP H 36 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG H 38 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP H 47 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP H 47 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP H 53 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP H 53 CB - CG - CD1 ANGL. DEV. = -8.6 DEGREES REMARK 500 TRP H 53 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP H 53 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP H 53 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG H 58 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR H 59 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG H 66 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP H 103 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP H 103 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR H 122 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 VAL H 127 CA - CB - CG1 ANGL. DEV. = -9.9 DEGREES REMARK 500 CYS H 128 N - CA - C ANGL. DEV. = 21.6 DEGREES REMARK 500 SER H 136 CA - CB - OG ANGL. DEV. = -24.3 DEGREES REMARK 500 SER H 136 CA - C - N ANGL. DEV. = -17.0 DEGREES REMARK 500 TRP H 157 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP H 157 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP H 157 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 GLN H 179 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 TYR H 185 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP H 199 CD1 - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP H 199 CG - CD1 - NE1 ANGL. DEV. = -7.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 52 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 15 100.10 -51.49 REMARK 500 ASP L 27D 50.94 -95.57 REMARK 500 ASP L 28 83.56 50.28 REMARK 500 ARG L 50 68.40 30.82 REMARK 500 SER L 51 -53.58 66.91 REMARK 500 SER L 56 106.55 -56.11 REMARK 500 ASP L 60 -22.23 -39.81 REMARK 500 SER L 67 135.77 -176.97 REMARK 500 ARG L 68 -59.34 60.29 REMARK 500 ASN L 76 118.24 -167.05 REMARK 500 ALA L 84 -174.22 -179.51 REMARK 500 SER L 91 31.68 -142.08 REMARK 500 PRO L 113 107.04 -58.92 REMARK 500 THR L 114 105.14 -54.72 REMARK 500 VAL H 2 97.79 51.46 REMARK 500 PRO H 14 151.63 -46.98 REMARK 500 SER H 41 107.14 -47.02 REMARK 500 LYS H 43 -176.24 -69.40 REMARK 500 GLU H 95 6.07 59.81 REMARK 500 TYR H 97 -25.39 179.73 REMARK 500 CYS H 128 126.57 87.25 REMARK 500 ASP H 130 104.98 -35.28 REMARK 500 THR H 134 65.19 74.59 REMARK 500 SER H 163 29.86 48.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN L 42 PRO L 43 146.15 REMARK 500 SER L 203 PRO L 204 -145.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 THE FAB FRAGMENT IS NUMBERED BY THE CONVENTION OF E.KABAT REMARK 999 (E.A.KABAT, T.T.WU, M.REID-MILLER, H.M.PERRY, K.S. REMARK 999 GOTTESMAN, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL REMARK 999 INTEREST, 4TH ED., (1987), NATIONAL INSTITUTE OF HEALTH, REMARK 999 BETHESDA, MD). DBREF 1GGB L 3 211 EMBL AJ131289 CAA10344 3 215 DBREF 1GGB H 114 228 UNP P01865 GCAM_MOUSE 1 100 SEQADV 1GGB LEU L 4 EMBL AJ131289 MET 4 CONFLICT SEQADV 1GGB SER L 7 EMBL AJ131289 THR 7 CONFLICT SEQADV 1GGB GLY L 9 EMBL AJ131289 ALA 9 CONFLICT SEQADV 1GGB SER L 27A EMBL AJ131289 ASN 28 CONFLICT SEQADV 1GGB ASP L 27C EMBL AJ131289 ARG 31 CONFLICT SEQADV 1GGB ASP L 28 EMBL AJ131289 TYR 32 CONFLICT SEQADV 1GGB LEU L 33 EMBL AJ131289 MET 37 CONFLICT SEQADV 1GGB PRO L 40 EMBL AJ131289 ALA 44 CONFLICT SEQADV 1GGB SER L 51 EMBL AJ131289 ALA 55 CONFLICT SEQADV 1GGB ILE L 55 EMBL AJ131289 GLU 59 CONFLICT SEQADV 1GGB ASP L 60 EMBL AJ131289 ALA 64 CONFLICT SEQADV 1GGB TYR L 87 EMBL AJ131289 PHE 91 CONFLICT SEQADV 1GGB GLN L 90 EMBL AJ131289 ARG 94 CONFLICT SEQADV 1GGB ASP L 94 EMBL AJ131289 VAL 98 CONFLICT SEQADV 1GGB LEU L 96 EMBL AJ131289 TRP 100 CONFLICT SEQADV 1GGB ALA L 100 EMBL AJ131289 GLY 104 CONFLICT SEQRES 1 L 215 ASP ILE VAL LEU THR GLN SER PRO GLY SER LEU ALA VAL SEQRES 2 L 215 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 215 GLU SER VAL ASP ASP ASP GLY ASN SER PHE LEU HIS TRP SEQRES 4 L 215 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 215 TYR ARG SER SER ASN LEU ILE SER GLY ILE PRO ASP ARG SEQRES 6 L 215 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 L 215 ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 L 215 CYS GLN GLN SER ASN GLU ASP PRO LEU THR PHE GLY ALA SEQRES 9 L 215 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 215 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 215 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 215 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 215 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 215 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 215 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 215 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 215 ILE VAL LYS SER PHE ASN ARG SEQRES 1 H 215 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY ILE LEU GLN SEQRES 2 H 215 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 H 215 PHE SER LEU SER THR TYR GLY MET GLY VAL SER TRP ILE SEQRES 4 H 215 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 H 215 ILE PHE TRP ASP GLY ASP LYS ARG TYR ASN PRO SER LEU SEQRES 6 H 215 LYS SER ARG LEU LYS ILE SER LYS ASP THR SER ASN ASN SEQRES 7 H 215 GLN VAL PHE LEU LYS ILE THR SER VAL ASP THR ALA ASP SEQRES 8 H 215 THR ALA THR TYR TYR CYS VAL GLN GLU GLY TYR ILE TYR SEQRES 9 H 215 TRP GLY GLN GLY THR SER VAL THR VAL SER SER ALA LYS SEQRES 10 H 215 THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL CYS SEQRES 11 H 215 GLY ASP THR THR GLY SER SER VAL THR LEU GLY CYS LEU SEQRES 12 H 215 VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR TRP SEQRES 13 H 215 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 H 215 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 H 215 VAL THR VAL THR SER SER THR TRP PRO SER GLN SER ILE SEQRES 16 H 215 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 H 215 ASP LYS LYS ILE GLU PRO ARG HELIX 1 1 GLU L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 ARG L 188 1 6 HELIX 4 4 LEU H 63 ARG H 66 5 4 HELIX 5 5 THR H 73 ASN H 75 5 3 HELIX 6 6 ASP H 83 ASP H 86 5 4 HELIX 7 7 SER H 163 SER H 165 5 3 HELIX 8 8 PRO H 213 SER H 216 5 4 SHEET 1 A 4 LEU L 4 SER L 7 0 SHEET 2 A 4 ALA L 19 ALA L 25 -1 N SER L 22 O SER L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 O SER L 63 N THR L 74 SHEET 1 B 5 ASN L 53 LEU L 54 0 SHEET 2 B 5 LYS L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 B 5 LEU L 33 GLN L 38 -1 O TRP L 35 N LEU L 47 SHEET 4 B 5 ALA L 84 GLN L 90 -1 O THR L 85 N GLN L 38 SHEET 5 B 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 C 6 ASN L 53 LEU L 54 0 SHEET 2 C 6 LYS L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 C 6 LEU L 33 GLN L 38 -1 O TRP L 35 N LEU L 47 SHEET 4 C 6 ALA L 84 GLN L 90 -1 O THR L 85 N GLN L 38 SHEET 5 C 6 THR L 102 ILE L 106 -1 O THR L 102 N TYR L 86 SHEET 6 C 6 SER L 10 VAL L 13 1 O LEU L 11 N GLU L 105 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 N VAL L 133 O PHE L 118 SHEET 3 D 4 TYR L 173 THR L 182 -1 N TYR L 173 O PHE L 139 SHEET 4 D 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 E 4 SER L 153 ARG L 155 0 SHEET 2 E 4 ILE L 144 ILE L 150 -1 O TRP L 148 N ARG L 155 SHEET 3 E 4 SER L 191 HIS L 198 -1 N THR L 193 O LYS L 149 SHEET 4 E 4 ILE L 205 ASN L 210 -1 N ILE L 205 O ALA L 196 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 N THR H 21 O SER H 7 SHEET 3 F 4 GLN H 77 ILE H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 F 4 SER H 70 ASP H 72 -1 O SER H 70 N PHE H 79 SHEET 1 G 6 ILE H 11 LEU H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 G 6 ALA H 88 GLN H 94 -1 O ALA H 88 N VAL H 109 SHEET 4 G 6 GLY H 35 PRO H 40 -1 SHEET 5 G 6 GLU H 46 PHE H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 LYS H 57 TYR H 59 -1 N ARG H 58 O HIS H 50 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 SER H 137 TYR H 147 -1 N GLY H 141 O LEU H 124 SHEET 3 H 4 LEU H 184 THR H 194 -1 N TYR H 185 O TYR H 147 SHEET 4 H 4 HIS H 172 THR H 173 -1 O HIS H 172 N SER H 190 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 SER H 137 TYR H 147 -1 N GLY H 141 O LEU H 124 SHEET 3 I 4 LEU H 184 THR H 194 -1 N TYR H 185 O TYR H 147 SHEET 4 I 4 VAL H 177 GLN H 179 -1 O VAL H 177 N THR H 186 SHEET 1 J 3 THR H 153 TRP H 157 0 SHEET 2 J 3 THR H 206 HIS H 212 -1 N ASN H 209 O THR H 156 SHEET 3 J 3 THR H 217 LYS H 222 -1 O THR H 217 N HIS H 212 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.15 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.01 SSBOND 3 CYS H 22 CYS H 92 1555 1555 1.99 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.00 CISPEP 1 SER L 7 PRO L 8 0 2.79 CISPEP 2 ASN L 76 PRO L 77 0 -13.91 CISPEP 3 ASP L 94 PRO L 95 0 -2.19 CISPEP 4 TYR L 140 PRO L 141 0 -22.81 CISPEP 5 PHE H 148 PRO H 149 0 -3.01 CISPEP 6 GLU H 150 PRO H 151 0 3.94 CISPEP 7 TRP H 199 PRO H 200 0 2.56 CRYST1 123.100 119.500 109.500 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009132 0.00000