HEADER HYDROLASE 07-DEC-00 1GHD TITLE CRYSTAL STRUCTURE OF THE GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE TITLE 2 BY MAD PHASING COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA-SUBUNIT + SPACER PEPTIDE; COMPND 5 EC: 3.5.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: BETA-SUBUNIT; COMPND 11 EC: 3.5.1.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. 130; SOURCE 3 ORGANISM_TAXID: 81841; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMFT7H6CAII; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. 130; SOURCE 10 ORGANISM_TAXID: 81841; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PMFT7H6CAII KEYWDS CEPHALOSPORIN ACYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.DING,W.JIANG,X.MAO,H.HE,S.ZHANG,H.TANG,M.BARTLAM,S.YE,F.JIANG, AUTHOR 2 Y.LIU,G.ZHAO,Z.RAO REVDAT 6 06-NOV-24 1GHD 1 REMARK REVDAT 5 27-DEC-23 1GHD 1 SEQADV LINK REVDAT 4 04-OCT-17 1GHD 1 REMARK REVDAT 3 24-FEB-09 1GHD 1 VERSN REVDAT 2 31-MAY-05 1GHD 1 JRNL REVDAT 1 08-JUL-03 1GHD 0 JRNL AUTH X.HUANG,R.ZENG,X.DING,X.MAO,Y.DING,Z.RAO,Y.XIE,W.JIANG, JRNL AUTH 2 G.ZHAO JRNL TITL AFFINITY ALKYLATION OF THE TRP-B4 RESIDUE OF THE BETA JRNL TITL 2 -SUBUNIT OF THE GLUTARYL 7-AMINOCEPHALOSPORANIC ACID ACYLASE JRNL TITL 3 OF PSEUDOMONAS SP. 130. JRNL REF J.BIOL.CHEM. V. 277 10256 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11782466 JRNL DOI 10.1074/JBC.M108683200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 76374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7585 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.290 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS REMARK 4 REMARK 4 1GHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000001514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 115.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9639 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 2000, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 2000, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: O V. 7.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, CADMIUM SULFATE, REMARK 280 HEPES, PH 7.5, HANGING DROP/VAPOR DIFFUSION, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 191.01000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.74000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.50500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.74000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 286.51500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.50500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 286.51500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 191.01000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 162 REMARK 465 ASP A 163 REMARK 465 PRO A 164 REMARK 465 PRO A 165 REMARK 465 ASP A 166 REMARK 465 LEU A 167 REMARK 465 ALA A 168 REMARK 465 ASP A 169 REMARK 465 GLN A 170 REMARK 465 GLY A 171 REMARK 465 LYS B 521 REMARK 465 PRO B 522 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 491 NH1 ARG B 495 2.03 REMARK 500 OH TYR B 181 OD1 ASP B 183 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 123 CA ASP A 123 CB 0.148 REMARK 500 ASP A 123 CB ASP A 123 CG 0.236 REMARK 500 GLU B 151 CD GLU B 151 OE2 0.087 REMARK 500 ASP B 488 CB ASP B 488 CG -0.127 REMARK 500 GLU B 509 CB GLU B 509 CG 0.200 REMARK 500 GLU B 509 CG GLU B 509 CD 0.158 REMARK 500 GLU B 514 CA GLU B 514 CB 0.146 REMARK 500 GLU B 514 CB GLU B 514 CG 0.289 REMARK 500 GLU B 514 CG GLU B 514 CD 0.240 REMARK 500 GLU B 514 CD GLU B 514 OE1 -0.071 REMARK 500 GLU B 514 CD GLU B 514 OE2 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 PRO A 73 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 123 OD1 - CG - OD2 ANGL. DEV. = -24.3 DEGREES REMARK 500 ASP A 123 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 123 CB - CG - OD2 ANGL. DEV. = 14.6 DEGREES REMARK 500 ILE A 124 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 LEU A 132 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO A 133 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 ASP B 155 CB - CG - OD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP B 163 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 164 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 183 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP B 203 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP B 203 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 PRO B 253 C - N - CA ANGL. DEV. = -19.0 DEGREES REMARK 500 PRO B 253 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 ASP B 260 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ALA B 361 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 PRO B 379 C - N - CA ANGL. DEV. = -19.0 DEGREES REMARK 500 PRO B 379 C - N - CD ANGL. DEV. = 15.6 DEGREES REMARK 500 ASP B 488 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG B 495 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLU B 509 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 GLU B 514 OE1 - CD - OE2 ANGL. DEV. = -25.6 DEGREES REMARK 500 GLU B 514 CG - CD - OE1 ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 25.34 -140.95 REMARK 500 ASP A 123 37.08 -67.86 REMARK 500 LEU A 132 -67.65 -4.51 REMARK 500 LEU A 150 -65.21 -144.84 REMARK 500 TYR A 151 -73.32 -64.31 REMARK 500 ASN B 21 55.43 -151.47 REMARK 500 ASN B 61 -158.57 -160.75 REMARK 500 MSE B 73 120.90 -35.62 REMARK 500 GLN B 84 139.78 -170.25 REMARK 500 ASP B 85 40.46 39.70 REMARK 500 ASP B 91 -125.26 61.90 REMARK 500 GLN B 93 -167.84 -126.83 REMARK 500 ALA B 109 -19.25 128.68 REMARK 500 ARG B 146 78.22 -113.58 REMARK 500 PHE B 177 148.10 83.65 REMARK 500 THR B 221 -15.84 -143.52 REMARK 500 ASN B 244 -7.12 77.30 REMARK 500 PRO B 247 28.37 -76.26 REMARK 500 THR B 308 -33.15 -136.45 REMARK 500 PHE B 360 -0.07 61.94 REMARK 500 SER B 377 9.64 -161.03 REMARK 500 ASN B 419 -122.28 54.66 REMARK 500 ALA B 427 167.89 64.69 REMARK 500 GLU B 445 1.45 -69.87 REMARK 500 GLU B 455 131.20 -38.08 REMARK 500 THR B 456 -84.43 -137.12 REMARK 500 PHE B 463 48.80 -84.50 REMARK 500 TYR B 475 40.76 -91.48 REMARK 500 GLU B 514 134.89 65.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 1GHD A 1 171 UNP O86089 O86089_9PROT 28 198 DBREF 1GHD B 1 522 UNP O86089 O86089_9PROT 199 720 SEQADV 1GHD MSE A 147 UNP O86089 MET 174 MODIFIED RESIDUE SEQADV 1GHD MSE B 64 UNP O86089 MET 262 MODIFIED RESIDUE SEQADV 1GHD MSE B 73 UNP O86089 MET 271 MODIFIED RESIDUE SEQADV 1GHD MSE B 149 UNP O86089 MET 347 MODIFIED RESIDUE SEQADV 1GHD MSE B 156 UNP O86089 MET 354 MODIFIED RESIDUE SEQADV 1GHD MSE B 172 UNP O86089 MET 370 MODIFIED RESIDUE SEQADV 1GHD MSE B 282 UNP O86089 MET 480 MODIFIED RESIDUE SEQADV 1GHD MSE B 294 UNP O86089 MET 492 MODIFIED RESIDUE SEQADV 1GHD MSE B 304 UNP O86089 MET 502 MODIFIED RESIDUE SEQADV 1GHD MSE B 416 UNP O86089 MET 614 MODIFIED RESIDUE SEQADV 1GHD MSE B 460 UNP O86089 MET 658 MODIFIED RESIDUE SEQADV 1GHD MSE B 473 UNP O86089 MET 671 MODIFIED RESIDUE SEQRES 1 A 171 LEU ALA GLU PRO THR SER THR PRO GLN ALA PRO ILE ALA SEQRES 2 A 171 ALA TYR LYS PRO ARG SER ASN GLU ILE LEU TRP ASP GLY SEQRES 3 A 171 TYR GLY VAL PRO HIS ILE TYR GLY VAL ASP ALA PRO SER SEQRES 4 A 171 ALA PHE TYR GLY TYR GLY TRP ALA GLN ALA ARG SER HIS SEQRES 5 A 171 GLY ASP ASN ILE LEU ARG LEU TYR GLY GLU ALA ARG GLY SEQRES 6 A 171 LYS GLY ALA GLU TYR TRP GLY PRO ASP TYR GLU GLN THR SEQRES 7 A 171 THR VAL TRP LEU LEU THR ASN GLY VAL PRO GLU ARG ALA SEQRES 8 A 171 GLN GLN TRP TYR ALA GLN GLN SER PRO ASP PHE ARG ALA SEQRES 9 A 171 ASN LEU ASP ALA PHE ALA ALA GLY ILE ASN ALA TYR ALA SEQRES 10 A 171 GLN GLN ASN PRO ASP ASP ILE SER PRO ASP VAL ARG GLN SEQRES 11 A 171 VAL LEU PRO VAL SER GLY ALA ASP VAL VAL ALA HIS ALA SEQRES 12 A 171 HIS ARG LEU MSE ASN PHE LEU TYR VAL ALA SER PRO GLY SEQRES 13 A 171 ARG THR LEU GLY GLU GLY ASP PRO PRO ASP LEU ALA ASP SEQRES 14 A 171 GLN GLY SEQRES 1 B 522 SER ASN SER TRP ALA VAL ALA PRO GLY LYS THR ALA ASN SEQRES 2 B 522 GLY ASN ALA LEU LEU LEU GLN ASN PRO HIS LEU SER TRP SEQRES 3 B 522 THR THR ASP TYR PHE THR TYR TYR GLU ALA HIS LEU VAL SEQRES 4 B 522 THR PRO ASP PHE GLU ILE TYR GLY ALA THR GLN ILE GLY SEQRES 5 B 522 LEU PRO VAL ILE ARG PHE ALA PHE ASN GLN ARG MSE GLY SEQRES 6 B 522 ILE THR ASN THR VAL ASN GLY MSE VAL GLY ALA THR ASN SEQRES 7 B 522 TYR ARG LEU THR LEU GLN ASP GLY GLY TYR LEU TYR ASP SEQRES 8 B 522 GLY GLN VAL ARG PRO PHE GLU ARG ARG GLN ALA SER TYR SEQRES 9 B 522 ARG LEU ARG GLN ALA ASP GLY THR THR VAL ASP LYS PRO SEQRES 10 B 522 LEU GLU ILE ARG SER SER VAL HIS GLY PRO VAL PHE GLU SEQRES 11 B 522 ARG ALA ASP GLY THR ALA VAL ALA VAL ARG VAL ALA GLY SEQRES 12 B 522 LEU ASP ARG PRO GLY MSE LEU GLU GLN TYR PHE ASP MSE SEQRES 13 B 522 ILE THR ALA ASP SER PHE ASP ASP TYR GLU ALA ALA LEU SEQRES 14 B 522 ALA ARG MSE GLN VAL PRO THR PHE ASN ILE VAL TYR ALA SEQRES 15 B 522 ASP ARG GLU GLY THR ILE ASN TYR SER PHE ASN GLY VAL SEQRES 16 B 522 ALA PRO LYS ARG ALA GLU GLY ASP ILE ALA PHE TRP GLN SEQRES 17 B 522 GLY LEU VAL PRO GLY ASP SER SER ARG TYR LEU TRP THR SEQRES 18 B 522 GLU THR HIS PRO LEU ASP ASP LEU PRO ARG VAL THR ASN SEQRES 19 B 522 PRO PRO GLY GLY PHE VAL GLN ASN SER ASN ASP PRO PRO SEQRES 20 B 522 TRP THR PRO THR TRP PRO VAL THR TYR THR PRO LYS ASP SEQRES 21 B 522 PHE PRO SER TYR LEU ALA PRO GLN THR PRO HIS SER LEU SEQRES 22 B 522 ARG ALA GLN GLN SER VAL ARG LEU MSE SER GLU ASN ASP SEQRES 23 B 522 ASP LEU THR LEU GLU ARG PHE MSE ALA LEU GLN LEU SER SEQRES 24 B 522 HIS ARG ALA VAL MSE ALA ASP ARG THR LEU PRO ASP LEU SEQRES 25 B 522 ILE PRO ALA ALA LEU ILE ASP PRO ASP PRO GLU VAL GLN SEQRES 26 B 522 ALA ALA ALA ARG LEU LEU ALA ALA TRP ASP ARG GLU PHE SEQRES 27 B 522 THR SER ASP SER ARG ALA ALA LEU LEU PHE GLU GLU TRP SEQRES 28 B 522 ALA ARG LEU PHE ALA GLY GLN ASN PHE ALA GLY GLN ALA SEQRES 29 B 522 GLY PHE ALA THR PRO TRP SER LEU ASP LYS PRO VAL SER SEQRES 30 B 522 THR PRO TYR GLY VAL ARG ASP PRO LYS ALA ALA VAL ASP SEQRES 31 B 522 GLN LEU ARG THR ALA ILE ALA ASN THR LYS ARG LYS TYR SEQRES 32 B 522 GLY ALA ILE ASP ARG PRO PHE GLY ASP ALA SER ARG MSE SEQRES 33 B 522 ILE LEU ASN ASP VAL ASN VAL PRO GLY ALA ALA GLY TYR SEQRES 34 B 522 GLY ASN LEU GLY SER PHE ARG VAL PHE THR TRP SER ASP SEQRES 35 B 522 PRO ASP GLU ASN GLY VAL ARG THR PRO VAL HIS GLY GLU SEQRES 36 B 522 THR TRP VAL ALA MSE ILE GLU PHE SER THR PRO VAL ARG SEQRES 37 B 522 ALA TYR GLY LEU MSE SER TYR GLY ASN SER ARG GLN PRO SEQRES 38 B 522 GLY THR THR HIS TYR SER ASP GLN ILE GLU ARG VAL SER SEQRES 39 B 522 ARG ALA ASP PHE ARG GLU LEU LEU LEU ARG ARG GLU GLN SEQRES 40 B 522 VAL GLU ALA ALA VAL GLN GLU ARG THR PRO PHE ASN PHE SEQRES 41 B 522 LYS PRO MODRES 1GHD MSE A 147 MET SELENOMETHIONINE MODRES 1GHD MSE B 64 MET SELENOMETHIONINE MODRES 1GHD MSE B 73 MET SELENOMETHIONINE MODRES 1GHD MSE B 149 MET SELENOMETHIONINE MODRES 1GHD MSE B 156 MET SELENOMETHIONINE MODRES 1GHD MSE B 172 MET SELENOMETHIONINE MODRES 1GHD MSE B 282 MET SELENOMETHIONINE MODRES 1GHD MSE B 294 MET SELENOMETHIONINE MODRES 1GHD MSE B 304 MET SELENOMETHIONINE MODRES 1GHD MSE B 416 MET SELENOMETHIONINE MODRES 1GHD MSE B 460 MET SELENOMETHIONINE MODRES 1GHD MSE B 473 MET SELENOMETHIONINE HET MSE A 147 8 HET MSE B 64 8 HET MSE B 73 8 HET MSE B 149 8 HET MSE B 156 8 HET MSE B 172 8 HET MSE B 282 8 HET MSE B 294 8 HET MSE B 304 8 HET MSE B 416 8 HET MSE B 460 8 HET MSE B 473 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *198(H2 O) HELIX 1 1 ASP A 36 GLY A 53 1 18 HELIX 2 2 HIS A 52 ARG A 64 1 13 HELIX 3 3 LYS A 66 GLY A 72 1 7 HELIX 4 4 TYR A 75 ASN A 85 1 11 HELIX 5 5 GLY A 86 GLN A 97 1 12 HELIX 6 6 SER A 99 ASN A 120 1 22 HELIX 7 7 PRO A 121 ILE A 124 5 4 HELIX 8 8 SER A 125 ARG A 129 5 5 HELIX 9 9 SER A 135 LEU A 150 1 16 HELIX 10 10 SER A 154 GLY A 160 1 7 HELIX 11 11 PRO B 8 LYS B 10 5 3 HELIX 12 12 THR B 28 PHE B 31 5 4 HELIX 13 13 GLY B 148 THR B 158 1 11 HELIX 14 14 SER B 161 ALA B 170 1 10 HELIX 15 15 ASP B 203 GLN B 208 1 6 HELIX 16 16 PRO B 225 LEU B 229 5 5 HELIX 17 17 THR B 257 PHE B 261 5 5 HELIX 18 18 SER B 272 GLU B 284 1 13 HELIX 19 19 THR B 289 LEU B 298 1 10 HELIX 20 20 ALA B 302 ARG B 307 1 6 HELIX 21 21 THR B 308 ILE B 318 1 11 HELIX 22 22 ASP B 321 ALA B 333 1 13 HELIX 23 23 ALA B 344 ALA B 356 1 13 HELIX 24 24 ASP B 384 GLY B 404 1 21 HELIX 25 25 PRO B 409 SER B 414 1 6 HELIX 26 26 TYR B 429 GLY B 433 5 5 HELIX 27 27 GLN B 489 ALA B 496 1 8 HELIX 28 28 ARG B 504 VAL B 512 1 9 SHEET 1 A 6 PHE B 58 PHE B 60 0 SHEET 2 A 6 GLU B 44 GLN B 50 -1 N TYR B 46 O PHE B 60 SHEET 3 A 6 TYR B 33 VAL B 39 -1 O TYR B 34 N THR B 49 SHEET 4 A 6 PRO A 30 TYR A 33 1 O PRO A 30 N HIS B 37 SHEET 5 A 6 GLU A 21 TRP A 24 -1 O GLU A 21 N TYR A 33 SHEET 6 A 6 ARG B 515 PRO B 517 -1 N THR B 516 O ILE A 22 SHEET 1 B 6 PHE B 239 GLN B 241 0 SHEET 2 B 6 ASN B 2 VAL B 6 -1 N ALA B 5 O VAL B 240 SHEET 3 B 6 LEU B 17 ASN B 21 -1 O LEU B 17 N VAL B 6 SHEET 4 B 6 TRP B 457 GLU B 462 -1 O ALA B 459 N GLN B 20 SHEET 5 B 6 ARG B 468 MSE B 473 -1 O ARG B 468 N GLU B 462 SHEET 6 B 6 ARG B 499 GLU B 500 -1 N ARG B 499 O GLY B 471 SHEET 1 C 3 HIS B 23 SER B 25 0 SHEET 2 C 3 PRO B 451 GLU B 455 -1 O GLY B 454 N LEU B 24 SHEET 3 C 3 PHE B 438 TRP B 440 -1 N THR B 439 O HIS B 453 SHEET 1 D 4 MSE B 64 THR B 69 0 SHEET 2 D 4 ASN B 178 ASP B 183 -1 N ASN B 178 O THR B 69 SHEET 3 D 4 ILE B 188 PHE B 192 -1 O ASN B 189 N TYR B 181 SHEET 4 D 4 ARG B 231 THR B 233 -1 O VAL B 232 N TYR B 190 SHEET 1 E 4 VAL B 128 GLU B 130 0 SHEET 2 E 4 ALA B 136 VAL B 141 -1 N VAL B 137 O PHE B 129 SHEET 3 E 4 ALA B 76 ARG B 80 -1 O THR B 77 N ARG B 140 SHEET 4 E 4 LEU B 210 PRO B 212 1 O VAL B 211 N ARG B 80 SHEET 1 F 3 THR B 82 GLN B 84 0 SHEET 2 F 3 GLY B 87 TYR B 90 -1 N GLY B 87 O GLN B 84 SHEET 3 F 3 GLN B 93 PRO B 96 -1 O GLN B 93 N TYR B 90 SHEET 1 G 2 GLU B 98 ARG B 107 0 SHEET 2 G 2 THR B 113 SER B 122 -1 O VAL B 114 N LEU B 106 SHEET 1 H 2 PHE B 366 THR B 368 0 SHEET 2 H 2 TYR B 380 VAL B 382 -1 O TYR B 380 N THR B 368 SHEET 1 I 2 ARG B 415 LEU B 418 0 SHEET 2 I 2 VAL B 421 PRO B 424 -1 N VAL B 421 O LEU B 418 LINK C LEU A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ASN A 148 1555 1555 1.32 LINK C ARG B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N GLY B 65 1555 1555 1.34 LINK C GLY B 72 N MSE B 73 1555 1555 1.34 LINK C MSE B 73 N VAL B 74 1555 1555 1.33 LINK C GLY B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N LEU B 150 1555 1555 1.34 LINK C ASP B 155 N MSE B 156 1555 1555 1.33 LINK C MSE B 156 N ILE B 157 1555 1555 1.33 LINK C ARG B 171 N MSE B 172 1555 1555 1.34 LINK C MSE B 172 N GLN B 173 1555 1555 1.33 LINK C LEU B 281 N MSE B 282 1555 1555 1.34 LINK C MSE B 282 N SER B 283 1555 1555 1.33 LINK C PHE B 293 N MSE B 294 1555 1555 1.33 LINK C MSE B 294 N ALA B 295 1555 1555 1.33 LINK C VAL B 303 N MSE B 304 1555 1555 1.33 LINK C MSE B 304 N ALA B 305 1555 1555 1.34 LINK C ARG B 415 N MSE B 416 1555 1555 1.32 LINK C MSE B 416 N ILE B 417 1555 1555 1.33 LINK C ALA B 459 N MSE B 460 1555 1555 1.33 LINK C MSE B 460 N ILE B 461 1555 1555 1.32 LINK C LEU B 472 N MSE B 473 1555 1555 1.34 LINK C MSE B 473 N SER B 474 1555 1555 1.33 CISPEP 1 THR B 465 PRO B 466 0 0.20 CRYST1 73.480 73.480 382.020 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013609 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002618 0.00000