data_1GJ2 # _entry.id 1GJ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1GJ2 pdb_00001gj2 10.2210/pdb1gj2/pdb RCSB RCSB001568 ? ? WWPDB D_1000001568 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-06-06 2 'Structure model' 1 1 2007-10-16 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.conn_type_id' 5 4 'Structure model' '_struct_conn.id' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_conn_type.id' 22 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GJ2 _pdbx_database_status.recvd_initial_deposition_date 2000-11-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1G5D 'Ensemble: 1G5D has the same sequence and contains an abasic site (alpha anomer) instead of the phosphoglycolate lesion' unspecified PDB 1GIZ ;Minimized Average Structure: 1GIZ has the same sequence and contains an abasic site (alpha anomer) instead of the phosphoglycolate lesion ; unspecified PDB 1G5E 'Ensemble: 1G5E has the same sequence and contains an abasic site (beta anomer) instead of the phosphoglycolate lesion' unspecified PDB 1GJ0 ;Minimized Average Structure: 1GJ0 has the same sequence and contains an abasic site (beta anomer) instead of the phosphoglycolate lesion ; unspecified PDB 1G5K 'Ensemble: 1G5K is the structure of the oligonucleotide containing the phosphoglycolate lesion without the bleomycin bound.' unspecified PDB 1GJ1 ;Minimized Average Structure: 1GJ1 is the structure of the oligonucleotide containing the phosphoglycolate lesion without the bleomycin bound. ; unspecified PDB 1G5L 'Ensemble: 1G5L is Co(III)-Bleomycin-OOH bound to an oligonucleotide containing a phosphoglycolate lesion' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hoehn, S.T.' 1 'Junker, H.-D.' 2 'Bunt, R.C.' 3 'Turner, C.J.' 4 'Stubbe, J.' 5 # _citation.id primary _citation.title ;Solution structure of Co(III)-bleomycin-OOH bound to a phosphoglycolate lesion containing oligonucleotide: implications for bleomycin-induced double-strand DNA cleavage. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 40 _citation.page_first 5894 _citation.page_last 5905 _citation.year 2001 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11352724 _citation.pdbx_database_id_DOI 10.1021/bi002635g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoehn, S.T.' 1 ? primary 'Junker, H.D.' 2 ? primary 'Bunt, R.C.' 3 ? primary 'Turner, C.J.' 4 ? primary 'Stubbe, J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*AP*AP*AP*G)-3'" 1802.232 1 ? ? ? ? 2 polymer syn "5'-D(P*AP*CP*TP*GP*GP*G)-3'" 1849.241 1 ? ? ? ? 3 polymer syn "5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'" 3942.572 1 ? ? ? ? 4 non-polymer man '2-PHOSPHOGLYCOLIC ACID' 156.031 1 ? ? ? ? 5 non-polymer syn 'COBALT (III) ION' 58.933 1 ? ? ? ? 6 non-polymer syn 'OXYGEN ATOM' 15.999 1 ? ? ? ? 7 non-polymer syn 'BLEOMYCIN B2' 1426.515 1 ? ? ? ? 8 non-polymer syn 'HYDROGEN PEROXIDE' 34.015 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DA)(DA)(DG)' CCAAAG A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DT)(DG)(DG)(DG)' ACTGGG B ? 3 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DA)(DG)(DT)(DA)(DC)(DT)(DT)(DT)(DG)(DG)' CCCAGTACTTTGG C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '2-PHOSPHOGLYCOLIC ACID' PGA 5 'COBALT (III) ION' 3CO 6 'OXYGEN ATOM' O 7 'BLEOMYCIN B2' BLB 8 'HYDROGEN PEROXIDE' PEO # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DA n 1 5 DA n 1 6 DG n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DG n 3 1 DC n 3 2 DC n 3 3 DC n 3 4 DA n 3 5 DG n 3 6 DT n 3 7 DA n 3 8 DC n 3 9 DT n 3 10 DT n 3 11 DT n 3 12 DG n 3 13 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3CO non-polymer . 'COBALT (III) ION' ? 'Co 3' 58.933 BLB non-polymer . 'BLEOMYCIN B2' ? 'C55 H85 N20 O21 S2 1' 1426.515 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 O non-polymer . 'OXYGEN ATOM' ? O 15.999 PEO non-polymer . 'HYDROGEN PEROXIDE' ? 'H2 O2' 34.015 PGA non-polymer . '2-PHOSPHOGLYCOLIC ACID' ? 'C2 H5 O6 P' 156.031 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DG 6 6 6 DG G A . n B 2 1 DA 1 8 8 DA A B . n B 2 2 DC 2 9 9 DC C B . n B 2 3 DT 3 10 10 DT T B . n B 2 4 DG 4 11 11 DG G B . n B 2 5 DG 5 12 12 DG G B . n B 2 6 DG 6 13 13 DG G B . n C 3 1 DC 1 14 14 DC C C . n C 3 2 DC 2 15 15 DC C C . n C 3 3 DC 3 16 16 DC C C . n C 3 4 DA 4 17 17 DA A C . n C 3 5 DG 5 18 18 DG G C . n C 3 6 DT 6 19 19 DT T C . n C 3 7 DA 7 20 20 DA A C . n C 3 8 DC 8 21 21 DC C C . n C 3 9 DT 9 22 22 DT T C . n C 3 10 DT 10 23 23 DT T C . n C 3 11 DT 11 24 24 DT T C . n C 3 12 DG 12 25 25 DG G C . n C 3 13 DG 13 26 26 DG G C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PGA 1 7 6 PGA 2PL A . E 5 3CO 1 14 10 3CO 3CO B . F 6 O 1 15 8 O O B . G 7 BLB 1 1 1 BLB BLB C . H 8 PEO 1 11 11 PEO PEO C . # _cell.entry_id 1GJ2 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GJ2 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1GJ2 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1GJ2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1GJ2 _struct.title 'CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GJ2 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DAMAGED DNA, DNA-DRUG COMPLEX, INTERCALATION, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1GJ2 1GJ2 ? ? ? 2 2 PDB 1GJ2 1GJ2 ? ? ? 3 3 PDB 1GJ2 1GJ2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GJ2 A 1 ? 6 ? 1GJ2 1 ? 6 ? 1 6 2 2 1GJ2 B 1 ? 6 ? 1GJ2 8 ? 13 ? 8 13 3 3 1GJ2 C 1 ? 13 ? 1GJ2 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DG 6 "O3'" ? ? ? 1_555 D PGA . P ? ? A DG 6 A PGA 7 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale both ? B DA 1 P ? ? ? 1_555 F O . O ? ? B DA 8 B O 15 1_555 ? ? ? ? ? ? ? 1.481 ? ? metalc1 metalc ? ? E 3CO . CO ? ? ? 1_555 G BLB . NC ? ? B 3CO 14 C BLB 1 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc2 metalc ? ? E 3CO . CO ? ? ? 1_555 G BLB . NB ? ? B 3CO 14 C BLB 1 1_555 ? ? ? ? ? ? ? 1.950 ? ? metalc3 metalc ? ? E 3CO . CO ? ? ? 1_555 G BLB . NG ? ? B 3CO 14 C BLB 1 1_555 ? ? ? ? ? ? ? 1.854 ? ? metalc4 metalc ? ? E 3CO . CO ? ? ? 1_555 G BLB . NH ? ? B 3CO 14 C BLB 1 1_555 ? ? ? ? ? ? ? 1.926 ? ? metalc5 metalc ? ? E 3CO . CO ? ? ? 1_555 G BLB . NJ ? ? B 3CO 14 C BLB 1 1_555 ? ? ? ? ? ? ? 1.918 ? ? metalc6 metalc ? ? E 3CO . CO ? ? ? 1_555 H PEO . O1 ? ? B 3CO 14 C PEO 11 1_555 ? ? ? ? ? ? ? 2.033 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 C DG 13 N1 ? ? A DC 1 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 C DG 13 O6 ? ? A DC 1 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 C DG 13 N2 ? ? A DC 1 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 12 N1 ? ? A DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 12 O6 ? ? A DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 12 N2 ? ? A DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 C DT 11 N3 ? ? A DA 3 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 C DT 11 O4 ? ? A DA 3 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 C DT 10 N3 ? ? A DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 C DT 10 O4 ? ? A DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 C DT 9 N3 ? ? A DA 5 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 C DT 9 O4 ? ? A DA 5 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 C DC 8 N3 ? ? A DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 C DC 8 O2 ? ? A DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 C DC 8 N4 ? ? A DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 8 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 8 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DC 9 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DC 9 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 9 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 13 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 13 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 13 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NC ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NB ? G BLB . ? C BLB 1 ? 1_555 84.5 ? 2 NC ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NG ? G BLB . ? C BLB 1 ? 1_555 77.6 ? 3 NB ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NG ? G BLB . ? C BLB 1 ? 1_555 93.5 ? 4 NC ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NH ? G BLB . ? C BLB 1 ? 1_555 154.8 ? 5 NB ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NH ? G BLB . ? C BLB 1 ? 1_555 86.9 ? 6 NG ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NH ? G BLB . ? C BLB 1 ? 1_555 79.3 ? 7 NC ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NJ ? G BLB . ? C BLB 1 ? 1_555 114.6 ? 8 NB ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NJ ? G BLB . ? C BLB 1 ? 1_555 93.5 ? 9 NG ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NJ ? G BLB . ? C BLB 1 ? 1_555 166.5 ? 10 NH ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 NJ ? G BLB . ? C BLB 1 ? 1_555 89.6 ? 11 NC ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 O1 ? H PEO . ? C PEO 11 ? 1_555 93.6 ? 12 NB ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 O1 ? H PEO . ? C PEO 11 ? 1_555 174.2 ? 13 NG ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 O1 ? H PEO . ? C PEO 11 ? 1_555 91.5 ? 14 NH ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 O1 ? H PEO . ? C PEO 11 ? 1_555 97.0 ? 15 NJ ? G BLB . ? C BLB 1 ? 1_555 CO ? E 3CO . ? B 3CO 14 ? 1_555 O1 ? H PEO . ? C PEO 11 ? 1_555 82.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PGA 7 ? 2 'BINDING SITE FOR RESIDUE PGA A 7' AC2 Software B 3CO 14 ? 2 'BINDING SITE FOR RESIDUE 3CO B 14' AC3 Software B O 15 ? 1 'BINDING SITE FOR RESIDUE O B 15' AC4 Software C BLB 1 ? 13 'BINDING SITE FOR RESIDUE BLB C 1' AC5 Software C PEO 11 ? 3 'BINDING SITE FOR RESIDUE PEO C 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG A 6 ? DG A 6 . ? 1_555 ? 2 AC1 2 BLB G . ? BLB C 1 . ? 1_555 ? 3 AC2 2 BLB G . ? BLB C 1 . ? 1_555 ? 4 AC2 2 PEO H . ? PEO C 11 . ? 1_555 ? 5 AC3 1 DA B 1 ? DA B 8 . ? 1_555 ? 6 AC4 13 DG A 6 ? DG A 6 . ? 1_555 ? 7 AC4 13 PGA D . ? PGA A 7 . ? 1_555 ? 8 AC4 13 DA B 1 ? DA B 8 . ? 1_555 ? 9 AC4 13 DC B 2 ? DC B 9 . ? 1_555 ? 10 AC4 13 DT B 3 ? DT B 10 . ? 1_555 ? 11 AC4 13 DG B 4 ? DG B 11 . ? 1_555 ? 12 AC4 13 DG B 5 ? DG B 12 . ? 1_555 ? 13 AC4 13 DG B 6 ? DG B 13 . ? 1_555 ? 14 AC4 13 3CO E . ? 3CO B 14 . ? 1_555 ? 15 AC4 13 PEO H . ? PEO C 11 . ? 1_555 ? 16 AC4 13 DG C 5 ? DG C 18 . ? 1_555 ? 17 AC4 13 DT C 6 ? DT C 19 . ? 1_555 ? 18 AC4 13 DA C 7 ? DA C 20 . ? 1_555 ? 19 AC5 3 3CO E . ? 3CO B 14 . ? 1_555 ? 20 AC5 3 BLB G . ? BLB C 1 . ? 1_555 ? 21 AC5 3 DT C 6 ? DT C 19 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CO B 3CO 14 ? ? HB2 C BLB 1 ? ? 1.41 2 1 OP1 C DA 20 ? ? HO2 C BLB 1 ? ? 1.50 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N9 _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DA _pdbx_validate_rmsd_bond.auth_seq_id_1 17 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C4 _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DA _pdbx_validate_rmsd_bond.auth_seq_id_2 17 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.410 _pdbx_validate_rmsd_bond.bond_target_value 1.374 _pdbx_validate_rmsd_bond.bond_deviation 0.036 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.93 108.30 4.63 0.30 N 2 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.98 118.90 4.08 0.60 N 3 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 122.89 118.60 4.29 0.60 N 4 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 122.63 118.60 4.03 0.60 N 5 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 126.91 119.90 7.01 0.70 N 6 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 102.98 108.00 -5.02 0.70 N 7 1 N1 B DA 8 ? ? C6 B DA 8 ? ? N6 B DA 8 ? ? 122.75 118.60 4.15 0.60 N 8 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 111.37 108.30 3.07 0.30 N 9 1 N3 B DC 9 ? ? C4 B DC 9 ? ? C5 B DC 9 ? ? 119.23 121.90 -2.67 0.40 N 10 1 N3 B DC 9 ? ? C4 B DC 9 ? ? N4 B DC 9 ? ? 122.32 118.00 4.32 0.70 N 11 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? N1 B DT 10 ? ? 112.16 108.30 3.86 0.30 N 12 1 C6 B DT 10 ? ? C5 B DT 10 ? ? C7 B DT 10 ? ? 118.32 122.90 -4.58 0.60 N 13 1 N1 B DG 11 ? ? C2 B DG 11 ? ? N3 B DG 11 ? ? 120.23 123.90 -3.67 0.60 N 14 1 N3 B DG 11 ? ? C2 B DG 11 ? ? N2 B DG 11 ? ? 125.90 119.90 6.00 0.70 N 15 1 N3 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 125.87 119.90 5.97 0.70 N 16 1 N3 B DG 13 ? ? C2 B DG 13 ? ? N2 B DG 13 ? ? 125.88 119.90 5.98 0.70 N 17 1 "O4'" C DC 14 ? ? "C1'" C DC 14 ? ? N1 C DC 14 ? ? 112.21 108.30 3.91 0.30 N 18 1 P C DC 15 ? ? "O5'" C DC 15 ? ? "C5'" C DC 15 ? ? 133.88 120.90 12.98 1.60 N 19 1 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 122.61 118.90 3.71 0.60 N 20 1 N3 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 117.21 121.90 -4.69 0.70 N 21 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 110.50 108.30 2.20 0.30 N 22 1 N1 C DC 16 ? ? C2 C DC 16 ? ? O2 C DC 16 ? ? 122.72 118.90 3.82 0.60 N 23 1 N1 C DA 17 ? ? C6 C DA 17 ? ? N6 C DA 17 ? ? 124.58 118.60 5.98 0.60 N 24 1 C5 C DA 17 ? ? C6 C DA 17 ? ? N6 C DA 17 ? ? 118.11 123.70 -5.59 0.80 N 25 1 "C3'" C DA 17 ? ? "O3'" C DA 17 ? ? P C DG 18 ? ? 127.22 119.70 7.52 1.20 Y 26 1 C8 C DG 18 ? ? N9 C DG 18 ? ? C4 C DG 18 ? ? 103.87 106.40 -2.53 0.40 N 27 1 "O4'" C DT 19 ? ? "C1'" C DT 19 ? ? "C2'" C DT 19 ? ? 100.97 105.90 -4.93 0.80 N 28 1 C4 C DT 19 ? ? C5 C DT 19 ? ? C7 C DT 19 ? ? 123.88 119.00 4.88 0.60 N 29 1 C6 C DT 19 ? ? C5 C DT 19 ? ? C7 C DT 19 ? ? 117.11 122.90 -5.79 0.60 N 30 1 "O4'" C DA 20 ? ? "C1'" C DA 20 ? ? "C2'" C DA 20 ? ? 100.69 105.90 -5.21 0.80 N 31 1 "O4'" C DA 20 ? ? "C1'" C DA 20 ? ? N9 C DA 20 ? ? 102.95 108.00 -5.05 0.70 N 32 1 "C3'" C DC 21 ? ? "O3'" C DC 21 ? ? P C DT 22 ? ? 129.67 119.70 9.97 1.20 Y 33 1 C4 C DT 22 ? ? C5 C DT 22 ? ? C7 C DT 22 ? ? 129.45 119.00 10.45 0.60 N 34 1 C6 C DT 22 ? ? C5 C DT 22 ? ? C7 C DT 22 ? ? 110.29 122.90 -12.61 0.60 N 35 1 "C3'" C DT 22 ? ? "O3'" C DT 22 ? ? P C DT 23 ? ? 131.67 119.70 11.97 1.20 Y 36 1 C4 C DT 23 ? ? C5 C DT 23 ? ? C7 C DT 23 ? ? 123.38 119.00 4.38 0.60 N 37 1 C6 C DT 23 ? ? C5 C DT 23 ? ? C7 C DT 23 ? ? 115.79 122.90 -7.11 0.60 N 38 1 C4 C DT 24 ? ? C5 C DT 24 ? ? C7 C DT 24 ? ? 130.35 119.00 11.35 0.60 N 39 1 C6 C DT 24 ? ? C5 C DT 24 ? ? C7 C DT 24 ? ? 109.29 122.90 -13.61 0.60 N 40 1 "C3'" C DT 24 ? ? "O3'" C DT 24 ? ? P C DG 25 ? ? 128.12 119.70 8.42 1.20 Y 41 1 N3 C DG 25 ? ? C2 C DG 25 ? ? N2 C DG 25 ? ? 124.41 119.90 4.51 0.70 N 42 1 N3 C DG 26 ? ? C2 C DG 26 ? ? N2 C DG 26 ? ? 125.72 119.90 5.82 0.70 N # _pdbx_nmr_ensemble.entry_id 1GJ2 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.25 mM drug-DNA complex; 40 mM sodium phosphate buffer' D2O 2 '1.25 mM drug-DNA complex; 40 mM sodium phosphate buffer' '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 293 ambient 6.8 '40 mM sodium phosphate buffer' ? K 2 278 ambient 6.8 '40 mM sodium phosphate buffer' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 PE-COSY 1 4 1 WATERGATE-NOESY 1 5 1 '31P- HCOSY' 1 6 1 13C-HSQC 1 7 1 ROESY 1 # _pdbx_nmr_details.entry_id 1GJ2 _pdbx_nmr_details.text ;DNA WAS SYNTHESIZED AS A DOUBLE HAIRPIN, BUT FOR MODELING PURPOSED WAS TREATED AS TWO STRANDS OF DNA; THE HEXAETHYLENE GLYCOL SPACERS WERE NOT INCLUDED IN THE MODELING ; # _pdbx_nmr_refine.entry_id 1GJ2 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details 'THE STRUCTURES ARE BASED ON 729 NOE-DERIVED DISTANCE CONSTRAINTS AND 96 DIHEDRAL ANGLE RESTRAINTS.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Felix 95.0 processing MSI 1 X-PLOR 3.851 'structure solution' Brunger 2 Felix 95.0 'data analysis' MSI 3 X-PLOR 3.851 refinement Brunger 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3CO CO CO N N 1 BLB NA N N N 2 BLB C2 C N S 3 BLB C1 C N N 4 BLB O1 O N N 5 BLB NC N N N 6 BLB C3 C N N 7 BLB NB N N N 8 BLB ND N N N 9 BLB C5 C N N 10 BLB C4 C N N 11 BLB O4 O N N 12 BLB C8 C Y N 13 BLB C9 C Y N 14 BLB C10 C Y N 15 BLB NG N Y N 16 BLB C7 C Y N 17 BLB NE N Y N 18 BLB C6 C N S 19 BLB NF N N N 20 BLB CA C N N 21 BLB C12 C N N 22 BLB O12 O N N 23 BLB NH N N N 24 BLB C13 C N S 25 BLB C30 C N N 26 BLB O30 O N N 27 BLB C14 C N R 28 BLB C27 C Y N 29 BLB OH1 O N N 30 BLB NJ N Y N 31 BLB C28 C Y N 32 BLB C29 C Y N 33 BLB NI N Y N 34 BLB NK N N N 35 BLB C34 C N S 36 BLB C36 C N N 37 BLB O36 O N N 38 BLB OH2 O N N 39 BLB C31 C N R 40 BLB CB C N N 41 BLB C33 C N S 42 BLB CC C N N 43 BLB NL N N N 44 BLB C37 C N S 45 BLB C40 C N N 46 BLB O40 O N N 47 BLB C38 C N R 48 BLB OH3 O N N 49 BLB CD C N N 50 BLB NM N N N 51 BLB C42 C N N 52 BLB C49 C N N 53 BLB O49 O N N 54 BLB C43 C Y N 55 BLB C41 C N N 56 BLB S43 S Y N 57 BLB C44 C Y N 58 BLB C45 C Y N 59 BLB NN N Y N 60 BLB C47 C Y N 61 BLB C48 C Y N 62 BLB NO N Y N 63 BLB C46 C Y N 64 BLB S46 S Y N 65 BLB NP N N N 66 BLB C50 C N N 67 BLB C51 C N N 68 BLB C52 C N N 69 BLB C53 C N N 70 BLB C54 C N N 71 BLB NR N N N 72 BLB NS N N N 73 BLB NT N N N 74 BLB O59 O N N 75 BLB O58 O N N 76 BLB C61 C N N 77 BLB O61 O N N 78 BLB O56 O N N 79 BLB C60 C N S 80 BLB O62 O N N 81 BLB C63 C N R 82 BLB C57 C N S 83 BLB C58 C N S 84 BLB C59 C N S 85 BLB C69 C N S 86 BLB C68 C N S 87 BLB C67 C N R 88 BLB C65 C N R 89 BLB O64 O N N 90 BLB C64 C N R 91 BLB O68 O N N 92 BLB O67 O N N 93 BLB O69 O N N 94 BLB NQ N N N 95 BLB C70 C N N 96 BLB O70 O N N 97 BLB O66 O N N 98 BLB C66 C N N 99 BLB HA2 H N N 100 BLB HA1 H N N 101 BLB H2 H N N 102 BLB HNC H N N 103 BLB H3E H N N 104 BLB H3X H N N 105 BLB HB1 H N N 106 BLB HB2 H N N 107 BLB HD2 H N N 108 BLB HD1 H N N 109 BLB H5E H N N 110 BLB H5X H N N 111 BLB H6 H N N 112 BLB HF2 H N N 113 BLB HF1 H N N 114 BLB HAA H N N 115 BLB HAB H N N 116 BLB HAC H N N 117 BLB HNH H N N 118 BLB H13 H N N 119 BLB H14 H N N 120 BLB H28 H N N 121 BLB H29 H N N 122 BLB HNI H N N 123 BLB HNK H N N 124 BLB H34 H N N 125 BLB HO2 H N N 126 BLB H31 H N N 127 BLB HBA H N N 128 BLB HBB H N N 129 BLB HBC H N N 130 BLB H33 H N N 131 BLB HCB H N N 132 BLB HCC H N N 133 BLB HCA H N N 134 BLB HNL H N N 135 BLB H37 H N N 136 BLB H38 H N N 137 BLB HO3 H N N 138 BLB HDB H N N 139 BLB HDC H N N 140 BLB HDA H N N 141 BLB HNM H N N 142 BLB H2E H N N 143 BLB H2X H N N 144 BLB H1E H N N 145 BLB H1X H N N 146 BLB H44 H N N 147 BLB H47 H N N 148 BLB HNP H N N 149 BLB H501 H N N 150 BLB H502 H N N 151 BLB H511 H N N 152 BLB H512 H N N 153 BLB H521 H N N 154 BLB H522 H N N 155 BLB H531 H N N 156 BLB H532 H N N 157 BLB HNR H N N 158 BLB HNS1 H N N 159 BLB HNS2 H N N 160 BLB HNT1 H N N 161 BLB HNT2 H N N 162 BLB HO59 H N N 163 BLB HO58 H N N 164 BLB H611 H N N 165 BLB H612 H N N 166 BLB HO61 H N N 167 BLB H60 H N N 168 BLB H63 H N N 169 BLB H57 H N N 170 BLB H58 H N N 171 BLB H59 H N N 172 BLB H69 H N N 173 BLB H68 H N N 174 BLB H67 H N N 175 BLB H65 H N N 176 BLB H64 H N N 177 BLB HO67 H N N 178 BLB HO69 H N N 179 BLB HNQ1 H N N 180 BLB HNQ2 H N N 181 BLB HO66 H N N 182 BLB H661 H N N 183 BLB H662 H N N 184 DA OP3 O N N 185 DA P P N N 186 DA OP1 O N N 187 DA OP2 O N N 188 DA "O5'" O N N 189 DA "C5'" C N N 190 DA "C4'" C N R 191 DA "O4'" O N N 192 DA "C3'" C N S 193 DA "O3'" O N N 194 DA "C2'" C N N 195 DA "C1'" C N R 196 DA N9 N Y N 197 DA C8 C Y N 198 DA N7 N Y N 199 DA C5 C Y N 200 DA C6 C Y N 201 DA N6 N N N 202 DA N1 N Y N 203 DA C2 C Y N 204 DA N3 N Y N 205 DA C4 C Y N 206 DA HOP3 H N N 207 DA HOP2 H N N 208 DA "H5'" H N N 209 DA "H5''" H N N 210 DA "H4'" H N N 211 DA "H3'" H N N 212 DA "HO3'" H N N 213 DA "H2'" H N N 214 DA "H2''" H N N 215 DA "H1'" H N N 216 DA H8 H N N 217 DA H61 H N N 218 DA H62 H N N 219 DA H2 H N N 220 DC OP3 O N N 221 DC P P N N 222 DC OP1 O N N 223 DC OP2 O N N 224 DC "O5'" O N N 225 DC "C5'" C N N 226 DC "C4'" C N R 227 DC "O4'" O N N 228 DC "C3'" C N S 229 DC "O3'" O N N 230 DC "C2'" C N N 231 DC "C1'" C N R 232 DC N1 N N N 233 DC C2 C N N 234 DC O2 O N N 235 DC N3 N N N 236 DC C4 C N N 237 DC N4 N N N 238 DC C5 C N N 239 DC C6 C N N 240 DC HOP3 H N N 241 DC HOP2 H N N 242 DC "H5'" H N N 243 DC "H5''" H N N 244 DC "H4'" H N N 245 DC "H3'" H N N 246 DC "HO3'" H N N 247 DC "H2'" H N N 248 DC "H2''" H N N 249 DC "H1'" H N N 250 DC H41 H N N 251 DC H42 H N N 252 DC H5 H N N 253 DC H6 H N N 254 DG OP3 O N N 255 DG P P N N 256 DG OP1 O N N 257 DG OP2 O N N 258 DG "O5'" O N N 259 DG "C5'" C N N 260 DG "C4'" C N R 261 DG "O4'" O N N 262 DG "C3'" C N S 263 DG "O3'" O N N 264 DG "C2'" C N N 265 DG "C1'" C N R 266 DG N9 N Y N 267 DG C8 C Y N 268 DG N7 N Y N 269 DG C5 C Y N 270 DG C6 C N N 271 DG O6 O N N 272 DG N1 N N N 273 DG C2 C N N 274 DG N2 N N N 275 DG N3 N N N 276 DG C4 C Y N 277 DG HOP3 H N N 278 DG HOP2 H N N 279 DG "H5'" H N N 280 DG "H5''" H N N 281 DG "H4'" H N N 282 DG "H3'" H N N 283 DG "HO3'" H N N 284 DG "H2'" H N N 285 DG "H2''" H N N 286 DG "H1'" H N N 287 DG H8 H N N 288 DG H1 H N N 289 DG H21 H N N 290 DG H22 H N N 291 DT OP3 O N N 292 DT P P N N 293 DT OP1 O N N 294 DT OP2 O N N 295 DT "O5'" O N N 296 DT "C5'" C N N 297 DT "C4'" C N R 298 DT "O4'" O N N 299 DT "C3'" C N S 300 DT "O3'" O N N 301 DT "C2'" C N N 302 DT "C1'" C N R 303 DT N1 N N N 304 DT C2 C N N 305 DT O2 O N N 306 DT N3 N N N 307 DT C4 C N N 308 DT O4 O N N 309 DT C5 C N N 310 DT C7 C N N 311 DT C6 C N N 312 DT HOP3 H N N 313 DT HOP2 H N N 314 DT "H5'" H N N 315 DT "H5''" H N N 316 DT "H4'" H N N 317 DT "H3'" H N N 318 DT "HO3'" H N N 319 DT "H2'" H N N 320 DT "H2''" H N N 321 DT "H1'" H N N 322 DT H3 H N N 323 DT H71 H N N 324 DT H72 H N N 325 DT H73 H N N 326 DT H6 H N N 327 O O O N N 328 PEO O1 O N N 329 PEO O2 O N N 330 PEO HO1 H N N 331 PEO HO2 H N N 332 PGA P P N N 333 PGA O1P O N N 334 PGA O2P O N N 335 PGA O3P O N N 336 PGA O4P O N N 337 PGA C2 C N N 338 PGA C1 C N N 339 PGA O1 O N N 340 PGA O2 O N N 341 PGA HOP3 H N N 342 PGA HOP4 H N N 343 PGA H21 H N N 344 PGA H22 H N N 345 PGA HO2 H N N 346 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BLB NA C1 sing N N 1 BLB NA HA2 sing N N 2 BLB NA HA1 sing N N 3 BLB C2 C1 sing N N 4 BLB C2 C3 sing N N 5 BLB C2 NB sing N N 6 BLB C2 H2 sing N N 7 BLB C1 O1 doub N N 8 BLB NC C3 sing N N 9 BLB NC C6 sing N N 10 BLB NC HNC sing N N 11 BLB C3 H3E sing N N 12 BLB C3 H3X sing N N 13 BLB NB HB1 sing N N 14 BLB NB HB2 sing N N 15 BLB ND C4 sing N N 16 BLB ND HD2 sing N N 17 BLB ND HD1 sing N N 18 BLB C5 C4 sing N N 19 BLB C5 C6 sing N N 20 BLB C5 H5E sing N N 21 BLB C5 H5X sing N N 22 BLB C4 O4 doub N N 23 BLB C8 C9 doub Y N 24 BLB C8 NE sing Y N 25 BLB C8 NF sing N N 26 BLB C9 C10 sing Y N 27 BLB C9 CA sing N N 28 BLB C10 NG doub Y N 29 BLB C10 C12 sing N N 30 BLB NG C7 sing Y N 31 BLB C7 NE doub Y N 32 BLB C7 C6 sing N N 33 BLB C6 H6 sing N N 34 BLB NF HF2 sing N N 35 BLB NF HF1 sing N N 36 BLB CA HAA sing N N 37 BLB CA HAB sing N N 38 BLB CA HAC sing N N 39 BLB C12 O12 doub N N 40 BLB C12 NH sing N N 41 BLB NH C13 sing N N 42 BLB NH HNH sing N N 43 BLB C13 C30 sing N N 44 BLB C13 C14 sing N N 45 BLB C13 H13 sing N N 46 BLB C30 O30 doub N N 47 BLB C30 NK sing N N 48 BLB C14 C27 sing N N 49 BLB C14 OH1 sing N N 50 BLB C14 H14 sing N N 51 BLB C27 NJ sing Y N 52 BLB C27 C28 doub Y N 53 BLB OH1 C63 sing N N 54 BLB NJ C29 doub Y N 55 BLB C28 NI sing Y N 56 BLB C28 H28 sing N N 57 BLB C29 NI sing Y N 58 BLB C29 H29 sing N N 59 BLB NI HNI sing N N 60 BLB NK C31 sing N N 61 BLB NK HNK sing N N 62 BLB C34 C36 sing N N 63 BLB C34 C33 sing N N 64 BLB C34 CC sing N N 65 BLB C34 H34 sing N N 66 BLB C36 O36 doub N N 67 BLB C36 NL sing N N 68 BLB OH2 C33 sing N N 69 BLB OH2 HO2 sing N N 70 BLB C31 CB sing N N 71 BLB C31 C33 sing N N 72 BLB C31 H31 sing N N 73 BLB CB HBA sing N N 74 BLB CB HBB sing N N 75 BLB CB HBC sing N N 76 BLB C33 H33 sing N N 77 BLB CC HCB sing N N 78 BLB CC HCC sing N N 79 BLB CC HCA sing N N 80 BLB NL C37 sing N N 81 BLB NL HNL sing N N 82 BLB C37 C40 sing N N 83 BLB C37 C38 sing N N 84 BLB C37 H37 sing N N 85 BLB C40 O40 doub N N 86 BLB C40 NM sing N N 87 BLB C38 OH3 sing N N 88 BLB C38 CD sing N N 89 BLB C38 H38 sing N N 90 BLB OH3 HO3 sing N N 91 BLB CD HDB sing N N 92 BLB CD HDC sing N N 93 BLB CD HDA sing N N 94 BLB NM C41 sing N N 95 BLB NM HNM sing N N 96 BLB C42 C43 sing N N 97 BLB C42 C41 sing N N 98 BLB C42 H2E sing N N 99 BLB C42 H2X sing N N 100 BLB C49 O49 doub N N 101 BLB C49 C48 sing N N 102 BLB C49 NP sing N N 103 BLB C43 S43 sing Y N 104 BLB C43 NN doub Y N 105 BLB C41 H1E sing N N 106 BLB C41 H1X sing N N 107 BLB S43 C44 sing Y N 108 BLB C44 C45 doub Y N 109 BLB C44 H44 sing N N 110 BLB C45 NN sing Y N 111 BLB C45 C46 sing Y N 112 BLB C47 C48 doub Y N 113 BLB C47 S46 sing Y N 114 BLB C47 H47 sing N N 115 BLB C48 NO sing Y N 116 BLB NO C46 doub Y N 117 BLB C46 S46 sing Y N 118 BLB NP C50 sing N N 119 BLB NP HNP sing N N 120 BLB C50 C51 sing N N 121 BLB C50 H501 sing N N 122 BLB C50 H502 sing N N 123 BLB C51 C52 sing N N 124 BLB C51 H511 sing N N 125 BLB C51 H512 sing N N 126 BLB C52 C53 sing N N 127 BLB C52 H521 sing N N 128 BLB C52 H522 sing N N 129 BLB C53 NR sing N N 130 BLB C53 H531 sing N N 131 BLB C53 H532 sing N N 132 BLB C54 NR sing N N 133 BLB C54 NS doub N N 134 BLB C54 NT sing N N 135 BLB NR HNR sing N N 136 BLB NS HNS1 sing N N 137 BLB NS HNS2 sing N N 138 BLB NT HNT1 sing N N 139 BLB NT HNT2 sing N N 140 BLB O59 C59 sing N N 141 BLB O59 HO59 sing N N 142 BLB O58 C58 sing N N 143 BLB O58 HO58 sing N N 144 BLB C61 O61 sing N N 145 BLB C61 C60 sing N N 146 BLB C61 H611 sing N N 147 BLB C61 H612 sing N N 148 BLB O61 HO61 sing N N 149 BLB O56 C57 sing N N 150 BLB O56 C64 sing N N 151 BLB C60 O62 sing N N 152 BLB C60 C59 sing N N 153 BLB C60 H60 sing N N 154 BLB O62 C63 sing N N 155 BLB C63 C57 sing N N 156 BLB C63 H63 sing N N 157 BLB C57 C58 sing N N 158 BLB C57 H57 sing N N 159 BLB C58 C59 sing N N 160 BLB C58 H58 sing N N 161 BLB C59 H59 sing N N 162 BLB C69 C68 sing N N 163 BLB C69 C64 sing N N 164 BLB C69 O69 sing N N 165 BLB C69 H69 sing N N 166 BLB C68 C67 sing N N 167 BLB C68 O68 sing N N 168 BLB C68 H68 sing N N 169 BLB C67 C65 sing N N 170 BLB C67 O67 sing N N 171 BLB C67 H67 sing N N 172 BLB C65 O64 sing N N 173 BLB C65 C66 sing N N 174 BLB C65 H65 sing N N 175 BLB O64 C64 sing N N 176 BLB C64 H64 sing N N 177 BLB O68 C70 sing N N 178 BLB O67 HO67 sing N N 179 BLB O69 HO69 sing N N 180 BLB NQ C70 sing N N 181 BLB NQ HNQ1 sing N N 182 BLB NQ HNQ2 sing N N 183 BLB C70 O70 doub N N 184 BLB O66 C66 sing N N 185 BLB O66 HO66 sing N N 186 BLB C66 H661 sing N N 187 BLB C66 H662 sing N N 188 DA OP3 P sing N N 189 DA OP3 HOP3 sing N N 190 DA P OP1 doub N N 191 DA P OP2 sing N N 192 DA P "O5'" sing N N 193 DA OP2 HOP2 sing N N 194 DA "O5'" "C5'" sing N N 195 DA "C5'" "C4'" sing N N 196 DA "C5'" "H5'" sing N N 197 DA "C5'" "H5''" sing N N 198 DA "C4'" "O4'" sing N N 199 DA "C4'" "C3'" sing N N 200 DA "C4'" "H4'" sing N N 201 DA "O4'" "C1'" sing N N 202 DA "C3'" "O3'" sing N N 203 DA "C3'" "C2'" sing N N 204 DA "C3'" "H3'" sing N N 205 DA "O3'" "HO3'" sing N N 206 DA "C2'" "C1'" sing N N 207 DA "C2'" "H2'" sing N N 208 DA "C2'" "H2''" sing N N 209 DA "C1'" N9 sing N N 210 DA "C1'" "H1'" sing N N 211 DA N9 C8 sing Y N 212 DA N9 C4 sing Y N 213 DA C8 N7 doub Y N 214 DA C8 H8 sing N N 215 DA N7 C5 sing Y N 216 DA C5 C6 sing Y N 217 DA C5 C4 doub Y N 218 DA C6 N6 sing N N 219 DA C6 N1 doub Y N 220 DA N6 H61 sing N N 221 DA N6 H62 sing N N 222 DA N1 C2 sing Y N 223 DA C2 N3 doub Y N 224 DA C2 H2 sing N N 225 DA N3 C4 sing Y N 226 DC OP3 P sing N N 227 DC OP3 HOP3 sing N N 228 DC P OP1 doub N N 229 DC P OP2 sing N N 230 DC P "O5'" sing N N 231 DC OP2 HOP2 sing N N 232 DC "O5'" "C5'" sing N N 233 DC "C5'" "C4'" sing N N 234 DC "C5'" "H5'" sing N N 235 DC "C5'" "H5''" sing N N 236 DC "C4'" "O4'" sing N N 237 DC "C4'" "C3'" sing N N 238 DC "C4'" "H4'" sing N N 239 DC "O4'" "C1'" sing N N 240 DC "C3'" "O3'" sing N N 241 DC "C3'" "C2'" sing N N 242 DC "C3'" "H3'" sing N N 243 DC "O3'" "HO3'" sing N N 244 DC "C2'" "C1'" sing N N 245 DC "C2'" "H2'" sing N N 246 DC "C2'" "H2''" sing N N 247 DC "C1'" N1 sing N N 248 DC "C1'" "H1'" sing N N 249 DC N1 C2 sing N N 250 DC N1 C6 sing N N 251 DC C2 O2 doub N N 252 DC C2 N3 sing N N 253 DC N3 C4 doub N N 254 DC C4 N4 sing N N 255 DC C4 C5 sing N N 256 DC N4 H41 sing N N 257 DC N4 H42 sing N N 258 DC C5 C6 doub N N 259 DC C5 H5 sing N N 260 DC C6 H6 sing N N 261 DG OP3 P sing N N 262 DG OP3 HOP3 sing N N 263 DG P OP1 doub N N 264 DG P OP2 sing N N 265 DG P "O5'" sing N N 266 DG OP2 HOP2 sing N N 267 DG "O5'" "C5'" sing N N 268 DG "C5'" "C4'" sing N N 269 DG "C5'" "H5'" sing N N 270 DG "C5'" "H5''" sing N N 271 DG "C4'" "O4'" sing N N 272 DG "C4'" "C3'" sing N N 273 DG "C4'" "H4'" sing N N 274 DG "O4'" "C1'" sing N N 275 DG "C3'" "O3'" sing N N 276 DG "C3'" "C2'" sing N N 277 DG "C3'" "H3'" sing N N 278 DG "O3'" "HO3'" sing N N 279 DG "C2'" "C1'" sing N N 280 DG "C2'" "H2'" sing N N 281 DG "C2'" "H2''" sing N N 282 DG "C1'" N9 sing N N 283 DG "C1'" "H1'" sing N N 284 DG N9 C8 sing Y N 285 DG N9 C4 sing Y N 286 DG C8 N7 doub Y N 287 DG C8 H8 sing N N 288 DG N7 C5 sing Y N 289 DG C5 C6 sing N N 290 DG C5 C4 doub Y N 291 DG C6 O6 doub N N 292 DG C6 N1 sing N N 293 DG N1 C2 sing N N 294 DG N1 H1 sing N N 295 DG C2 N2 sing N N 296 DG C2 N3 doub N N 297 DG N2 H21 sing N N 298 DG N2 H22 sing N N 299 DG N3 C4 sing N N 300 DT OP3 P sing N N 301 DT OP3 HOP3 sing N N 302 DT P OP1 doub N N 303 DT P OP2 sing N N 304 DT P "O5'" sing N N 305 DT OP2 HOP2 sing N N 306 DT "O5'" "C5'" sing N N 307 DT "C5'" "C4'" sing N N 308 DT "C5'" "H5'" sing N N 309 DT "C5'" "H5''" sing N N 310 DT "C4'" "O4'" sing N N 311 DT "C4'" "C3'" sing N N 312 DT "C4'" "H4'" sing N N 313 DT "O4'" "C1'" sing N N 314 DT "C3'" "O3'" sing N N 315 DT "C3'" "C2'" sing N N 316 DT "C3'" "H3'" sing N N 317 DT "O3'" "HO3'" sing N N 318 DT "C2'" "C1'" sing N N 319 DT "C2'" "H2'" sing N N 320 DT "C2'" "H2''" sing N N 321 DT "C1'" N1 sing N N 322 DT "C1'" "H1'" sing N N 323 DT N1 C2 sing N N 324 DT N1 C6 sing N N 325 DT C2 O2 doub N N 326 DT C2 N3 sing N N 327 DT N3 C4 sing N N 328 DT N3 H3 sing N N 329 DT C4 O4 doub N N 330 DT C4 C5 sing N N 331 DT C5 C7 sing N N 332 DT C5 C6 doub N N 333 DT C7 H71 sing N N 334 DT C7 H72 sing N N 335 DT C7 H73 sing N N 336 DT C6 H6 sing N N 337 PEO O1 O2 sing N N 338 PEO O1 HO1 sing N N 339 PEO O2 HO2 sing N N 340 PGA P O1P sing N N 341 PGA P O2P doub N N 342 PGA P O3P sing N N 343 PGA P O4P sing N N 344 PGA O1P C2 sing N N 345 PGA O3P HOP3 sing N N 346 PGA O4P HOP4 sing N N 347 PGA C2 C1 sing N N 348 PGA C2 H21 sing N N 349 PGA C2 H22 sing N N 350 PGA C1 O1 doub N N 351 PGA C1 O2 sing N N 352 PGA O2 HO2 sing N N 353 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1GJ2 'double helix' 1GJ2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 C DG 13 1_555 0.393 -0.239 -0.260 20.382 -23.335 -3.249 1 A_DC1:DG26_C A 1 ? C 26 ? 19 1 1 A DC 2 1_555 C DG 12 1_555 0.575 -0.381 -0.005 3.758 -9.799 -5.198 2 A_DC2:DG25_C A 2 ? C 25 ? 19 1 1 A DA 3 1_555 C DT 11 1_555 -0.309 -0.289 0.522 2.825 7.265 7.227 3 A_DA3:DT24_C A 3 ? C 24 ? 20 1 1 A DA 4 1_555 C DT 10 1_555 0.009 -0.299 0.468 -2.675 3.099 0.058 4 A_DA4:DT23_C A 4 ? C 23 ? 20 1 1 A DA 5 1_555 C DT 9 1_555 -0.305 -0.304 0.380 4.559 0.743 -0.471 5 A_DA5:DT22_C A 5 ? C 22 ? 20 1 1 A DG 6 1_555 C DC 8 1_555 -0.487 -0.367 0.650 9.925 4.080 -4.746 6 A_DG6:DC21_C A 6 ? C 21 ? 19 1 1 B DA 1 1_555 C DT 6 1_555 0.224 -0.189 0.035 -1.203 0.030 -10.046 7 B_DA8:DT19_C B 8 ? C 19 ? 20 1 1 B DC 2 1_555 C DG 5 1_555 -0.176 -0.229 0.379 -2.980 -2.660 -5.376 8 B_DC9:DG18_C B 9 ? C 18 ? 19 1 1 B DT 3 1_555 C DA 4 1_555 -0.139 -0.147 -0.163 5.779 2.411 -13.627 9 B_DT10:DA17_C B 10 ? C 17 ? 20 1 1 B DG 4 1_555 C DC 3 1_555 -0.558 -0.309 -0.033 17.067 18.817 -5.551 10 B_DG11:DC16_C B 11 ? C 16 ? 19 1 1 B DG 5 1_555 C DC 2 1_555 -0.275 -0.275 -0.111 -1.782 -1.418 -5.798 11 B_DG12:DC15_C B 12 ? C 15 ? 19 1 1 B DG 6 1_555 C DC 1 1_555 -0.618 -0.332 0.176 9.411 -5.196 -4.405 12 B_DG13:DC14_C B 13 ? C 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 C DG 13 1_555 A DC 2 1_555 C DG 12 1_555 0.159 -0.521 3.720 2.739 9.477 42.924 -1.701 0.078 3.536 12.750 -3.685 43.991 1 AA_DC1DC2:DG25DG26_CC A 1 ? C 26 ? A 2 ? C 25 ? 1 A DC 2 1_555 C DG 12 1_555 A DA 3 1_555 C DT 11 1_555 0.312 -1.048 3.337 -7.480 -5.988 31.862 -0.791 -1.847 3.319 -10.611 13.256 33.236 2 AA_DC2DA3:DT24DG25_CC A 2 ? C 25 ? A 3 ? C 24 ? 1 A DA 3 1_555 C DT 11 1_555 A DA 4 1_555 C DT 10 1_555 -0.508 -0.849 3.573 -0.423 -5.878 38.805 -0.484 0.701 3.663 -8.785 0.632 39.233 3 AA_DA3DA4:DT23DT24_CC A 3 ? C 24 ? A 4 ? C 23 ? 1 A DA 4 1_555 C DT 10 1_555 A DA 5 1_555 C DT 9 1_555 -0.132 -0.615 3.146 1.358 -5.780 31.989 -0.110 0.467 3.197 -10.376 -2.438 32.522 4 AA_DA4DA5:DT22DT23_CC A 4 ? C 23 ? A 5 ? C 22 ? 1 A DA 5 1_555 C DT 9 1_555 A DG 6 1_555 C DC 8 1_555 -0.142 -0.915 3.044 -3.213 -5.912 38.704 -0.689 -0.153 3.146 -8.839 4.803 39.262 5 AA_DA5DG6:DC21DT22_CC A 5 ? C 22 ? A 6 ? C 21 ? 1 B DA 1 1_555 C DT 6 1_555 B DC 2 1_555 C DG 5 1_555 -0.180 -0.604 3.205 -2.883 -1.055 33.538 -0.873 -0.151 3.225 -1.823 4.984 33.674 6 BB_DA8DC9:DG18DT19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 B DC 2 1_555 C DG 5 1_555 B DT 3 1_555 C DA 4 1_555 0.076 -0.423 3.018 4.976 -3.457 33.100 -0.205 0.625 3.025 -6.005 -8.644 33.635 7 BB_DC9DT10:DA17DG18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 B DT 3 1_555 C DA 4 1_555 B DG 4 1_555 C DC 3 1_555 0.536 -0.938 3.376 -2.952 -9.496 33.240 -0.019 -1.384 3.447 -16.156 5.022 34.656 8 BB_DT10DG11:DC16DA17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 B DG 4 1_555 C DC 3 1_555 B DG 5 1_555 C DC 2 1_555 0.123 -0.905 4.166 4.408 -11.707 44.235 0.171 0.344 4.254 -15.189 -5.720 45.884 9 BB_DG11DG12:DC15DC16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 B DG 5 1_555 C DC 2 1_555 B DG 6 1_555 C DC 1 1_555 -0.413 0.098 3.098 -4.191 6.456 28.289 -1.145 -0.053 3.073 12.909 8.380 29.297 10 BB_DG12DG13:DC14DC15_CC B 12 ? C 15 ? B 13 ? C 14 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 HOME-BUILT Home-built 750 ? 2 HOME-BUILT Home-built 600 ? # _atom_sites.entry_id 1GJ2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H N O P S # loop_