HEADER HYDROLASE 10-OCT-01 1GNX TITLE B-GLUCOSIDASE FROM STREPTOMYCES SP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, GLYCOSYLTRANSFERASE, FAMILY 1 OF GLYCOSYL HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GUASCH,J.A.PEREZ-PONS,M.VALLMITJANA,E.QUEROL,M.COLL REVDAT 5 13-DEC-23 1GNX 1 REMARK HETSYN REVDAT 4 29-JUL-20 1GNX 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 24-JUL-19 1GNX 1 REMARK REVDAT 2 24-FEB-09 1GNX 1 VERSN REVDAT 1 17-OCT-02 1GNX 0 JRNL AUTH A.GUASCH,M.VALLMITJANA,R.PEREZ,E.QUEROL,J.A.PEREZ-PONS, JRNL AUTH 2 M.COLL JRNL TITL BETA-GLUCOSIDASE FROM STREPTOMYCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.GUASCH,M.VALLMITJANA,R.PEREZ,E.QUEROL,J.A.PEREZ-PONS, REMARK 1 AUTH 2 M.COLL REMARK 1 TITL CLONING, OVEREXPRESSION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY ANALYSIS OF A FAMILY 1 BETA--GLUCOSIDASE FROM REMARK 1 TITL 3 STREPTOMYCES REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 679 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 10089468 REMARK 1 DOI 10.1107/S0907444998013833 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.0 REMARK 3 NUMBER OF REFLECTIONS : 107872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 5761 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.72600 REMARK 3 B22 (A**2) : 1.67500 REMARK 3 B33 (A**2) : 4.05100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.372 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1290008110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 103.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108818 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 85.60 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.4 REMARK 200 DATA REDUNDANCY IN SHELL : 74.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M AMMOMIUM SULFATE, 0.1 M HEPES PH REMARK 280 7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.64000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.65500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.64000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.65500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.64000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.65500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.64000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE PROTEIN WAS SUBMITED TO LIMITED PROTEOLYSIS WITH REMARK 400 TRYPSIN. THE MAJOR TRYPSIN-CLEAVAGE SITES CORRESPOND TO REMARK 400 SER 315 AND ARG 330. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 ASP A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 316 REMARK 465 ALA A 317 REMARK 465 ASP A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 THR A 322 REMARK 465 HIS A 323 REMARK 465 ASN A 324 REMARK 465 SER A 325 REMARK 465 ASP A 326 REMARK 465 GLY A 327 REMARK 465 HIS A 328 REMARK 465 GLY A 329 REMARK 465 ARG A 330 REMARK 465 SER A 331 REMARK 465 ALA A 479 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 THR B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 ASP B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 316 REMARK 465 ALA B 317 REMARK 465 ASP B 318 REMARK 465 GLY B 319 REMARK 465 SER B 320 REMARK 465 GLY B 321 REMARK 465 THR B 322 REMARK 465 HIS B 323 REMARK 465 ASN B 324 REMARK 465 SER B 325 REMARK 465 ASP B 326 REMARK 465 GLY B 327 REMARK 465 HIS B 328 REMARK 465 GLY B 329 REMARK 465 ARG B 330 REMARK 465 SER B 331 REMARK 465 ALA B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 478 CA C O CB OG1 CG2 REMARK 470 ALA B 479 CA C O CB REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 20 CG CD OE1 OE2 REMARK 480 ARG A 74 CD NE CZ NH1 NH2 REMARK 480 GLU A 82 CG CD OE1 OE2 REMARK 480 ARG A 102 CZ NH1 NH2 REMARK 480 GLU A 153 OE1 OE2 REMARK 480 ARG A 154 CD NE CZ NH1 NH2 REMARK 480 GLU A 157 OE1 OE2 REMARK 480 ASP A 168 CG OD1 OD2 REMARK 480 LYS A 171 CD CE NZ REMARK 480 ASP A 222 OD1 OD2 REMARK 480 SER A 245 OG REMARK 480 ASP A 246 CB CG OD1 OD2 REMARK 480 ARG A 254 NH2 REMARK 480 GLU A 274 CG CD OE1 REMARK 480 LYS A 278 CG CD CE NZ REMARK 480 ASP A 285 OD1 OD2 REMARK 480 ARG A 290 NH1 NH2 REMARK 480 LYS A 300 CD CE NZ REMARK 480 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 350 OE1 OE2 REMARK 480 ARG A 369 NH1 NH2 REMARK 480 ARG A 408 NE CZ NH1 NH2 REMARK 480 LYS A 419 CE NZ REMARK 480 ARG A 472 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 20 CD OE1 OE2 REMARK 480 ARG B 52 NE CZ NH1 NH2 REMARK 480 GLU B 82 OE1 OE2 REMARK 480 GLU B 148 CD OE1 OE2 REMARK 480 ALA B 152 C REMARK 480 ASP B 168 OD1 OD2 REMARK 480 LYS B 171 CD CE NZ REMARK 480 GLU B 274 CG CD OE1 OE2 REMARK 480 LYS B 278 CD CE NZ REMARK 480 ASP B 291 CG OD1 OD2 REMARK 480 LYS B 300 CE NZ REMARK 480 ASP B 340 CG REMARK 480 ARG B 341 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU B 350 CD OE1 OE2 REMARK 480 GLU B 402 OE1 OE2 REMARK 480 ARG B 416 CD NE CZ NH1 NH2 REMARK 480 LYS B 419 CG CD CE NZ REMARK 480 HIS B 440 NE2 REMARK 480 ARG B 465 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 244 OD1 ASP B 244 3655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 11.68 56.52 REMARK 500 ALA A 66 -127.11 50.09 REMARK 500 THR A 100 -11.30 77.35 REMARK 500 TRP A 134 -10.57 81.65 REMARK 500 TYR A 309 -39.81 -132.86 REMARK 500 TRP A 438 -123.91 47.03 REMARK 500 ASN B 59 16.31 54.32 REMARK 500 ALA B 66 -125.66 49.40 REMARK 500 TRP B 134 -10.09 80.97 REMARK 500 TYR B 309 -41.32 -135.19 REMARK 500 TRP B 438 -124.46 46.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 FRU C 2 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. DBREF 1GNX A 1 479 UNP Q59976 Q59976 1 479 DBREF 1GNX B 1 479 UNP Q59976 Q59976 1 479 SEQADV 1GNX ALA A 143 UNP Q59976 PRO 143 CONFLICT SEQADV 1GNX ALA A 150 UNP Q59976 PRO 150 CONFLICT SEQADV 1GNX ASP A 246 UNP Q59976 GLU 246 CONFLICT SEQADV 1GNX ALA B 143 UNP Q59976 PRO 143 CONFLICT SEQADV 1GNX ALA B 150 UNP Q59976 PRO 150 CONFLICT SEQADV 1GNX ASP B 246 UNP Q59976 GLU 246 CONFLICT SEQRES 1 A 479 MET VAL PRO ALA ALA GLN GLN THR ALA THR ALA PRO ASP SEQRES 2 A 479 ALA ALA LEU THR PHE PRO GLU GLY PHE LEU TRP GLY SER SEQRES 3 A 479 ALA THR ALA SER TYR GLN ILE GLU GLY ALA ALA ALA GLU SEQRES 4 A 479 ASP GLY ARG THR PRO SER ILE TRP ASP THR TYR ALA ARG SEQRES 5 A 479 THR PRO GLY ARG VAL ARG ASN GLY ASP THR GLY ASP VAL SEQRES 6 A 479 ALA THR ASP HIS TYR HIS ARG TRP ARG GLU ASP VAL ALA SEQRES 7 A 479 LEU MET ALA GLU LEU GLY LEU GLY ALA TYR ARG PHE SER SEQRES 8 A 479 LEU ALA TRP PRO ARG ILE GLN PRO THR GLY ARG GLY PRO SEQRES 9 A 479 ALA LEU GLN LYS GLY LEU ASP PHE TYR ARG ARG LEU ALA SEQRES 10 A 479 ASP GLU LEU LEU ALA LYS GLY ILE GLN PRO VAL ALA THR SEQRES 11 A 479 LEU TYR HIS TRP ASP LEU PRO GLN GLU LEU GLU ASN ALA SEQRES 12 A 479 GLY GLY TRP PRO GLU ARG ALA THR ALA GLU ARG PHE ALA SEQRES 13 A 479 GLU TYR ALA ALA ILE ALA ALA ASP ALA LEU GLY ASP ARG SEQRES 14 A 479 VAL LYS THR TRP THR THR LEU ASN GLU PRO TRP CYS SER SEQRES 15 A 479 ALA PHE LEU GLY TYR GLY SER GLY VAL HIS ALA PRO GLY SEQRES 16 A 479 ARG THR ASP PRO VAL ALA ALA LEU ARG ALA ALA HIS HIS SEQRES 17 A 479 LEU ASN LEU GLY HIS GLY LEU ALA VAL GLN ALA LEU ARG SEQRES 18 A 479 ASP ARG LEU PRO ALA ASP ALA GLN CYS SER VAL THR LEU SEQRES 19 A 479 ASN ILE HIS HIS VAL ARG PRO LEU THR ASP SER ASP ALA SEQRES 20 A 479 ASP ALA ASP ALA VAL ARG ARG ILE ASP ALA LEU ALA ASN SEQRES 21 A 479 ARG VAL PHE THR GLY PRO MET LEU GLN GLY ALA TYR PRO SEQRES 22 A 479 GLU ASP LEU VAL LYS ASP THR ALA GLY LEU THR ASP TRP SEQRES 23 A 479 SER PHE VAL ARG ASP GLY ASP LEU ARG LEU ALA HIS GLN SEQRES 24 A 479 LYS LEU ASP PHE LEU GLY VAL ASN TYR TYR SER PRO THR SEQRES 25 A 479 LEU VAL SER GLU ALA ASP GLY SER GLY THR HIS ASN SER SEQRES 26 A 479 ASP GLY HIS GLY ARG SER ALA HIS SER PRO TRP PRO GLY SEQRES 27 A 479 ALA ASP ARG VAL ALA PHE HIS GLN PRO PRO GLY GLU THR SEQRES 28 A 479 THR ALA MET GLY TRP ALA VAL ASP PRO SER GLY LEU TYR SEQRES 29 A 479 GLU LEU LEU ARG ARG LEU SER SER ASP PHE PRO ALA LEU SEQRES 30 A 479 PRO LEU VAL ILE THR GLU ASN GLY ALA ALA PHE HIS ASP SEQRES 31 A 479 TYR ALA ASP PRO GLU GLY ASN VAL ASN ASP PRO GLU ARG SEQRES 32 A 479 ILE ALA TYR VAL ARG ASP HIS LEU ALA ALA VAL HIS ARG SEQRES 33 A 479 ALA ILE LYS ASP GLY SER ASP VAL ARG GLY TYR PHE LEU SEQRES 34 A 479 TRP SER LEU LEU ASP ASN PHE GLU TRP ALA HIS GLY TYR SEQRES 35 A 479 SER LYS ARG PHE GLY ALA VAL TYR VAL ASP TYR PRO THR SEQRES 36 A 479 GLY THR ARG ILE PRO LYS ALA SER ALA ARG TRP TYR ALA SEQRES 37 A 479 GLU VAL ALA ARG THR GLY VAL LEU PRO THR ALA SEQRES 1 B 479 MET VAL PRO ALA ALA GLN GLN THR ALA THR ALA PRO ASP SEQRES 2 B 479 ALA ALA LEU THR PHE PRO GLU GLY PHE LEU TRP GLY SER SEQRES 3 B 479 ALA THR ALA SER TYR GLN ILE GLU GLY ALA ALA ALA GLU SEQRES 4 B 479 ASP GLY ARG THR PRO SER ILE TRP ASP THR TYR ALA ARG SEQRES 5 B 479 THR PRO GLY ARG VAL ARG ASN GLY ASP THR GLY ASP VAL SEQRES 6 B 479 ALA THR ASP HIS TYR HIS ARG TRP ARG GLU ASP VAL ALA SEQRES 7 B 479 LEU MET ALA GLU LEU GLY LEU GLY ALA TYR ARG PHE SER SEQRES 8 B 479 LEU ALA TRP PRO ARG ILE GLN PRO THR GLY ARG GLY PRO SEQRES 9 B 479 ALA LEU GLN LYS GLY LEU ASP PHE TYR ARG ARG LEU ALA SEQRES 10 B 479 ASP GLU LEU LEU ALA LYS GLY ILE GLN PRO VAL ALA THR SEQRES 11 B 479 LEU TYR HIS TRP ASP LEU PRO GLN GLU LEU GLU ASN ALA SEQRES 12 B 479 GLY GLY TRP PRO GLU ARG ALA THR ALA GLU ARG PHE ALA SEQRES 13 B 479 GLU TYR ALA ALA ILE ALA ALA ASP ALA LEU GLY ASP ARG SEQRES 14 B 479 VAL LYS THR TRP THR THR LEU ASN GLU PRO TRP CYS SER SEQRES 15 B 479 ALA PHE LEU GLY TYR GLY SER GLY VAL HIS ALA PRO GLY SEQRES 16 B 479 ARG THR ASP PRO VAL ALA ALA LEU ARG ALA ALA HIS HIS SEQRES 17 B 479 LEU ASN LEU GLY HIS GLY LEU ALA VAL GLN ALA LEU ARG SEQRES 18 B 479 ASP ARG LEU PRO ALA ASP ALA GLN CYS SER VAL THR LEU SEQRES 19 B 479 ASN ILE HIS HIS VAL ARG PRO LEU THR ASP SER ASP ALA SEQRES 20 B 479 ASP ALA ASP ALA VAL ARG ARG ILE ASP ALA LEU ALA ASN SEQRES 21 B 479 ARG VAL PHE THR GLY PRO MET LEU GLN GLY ALA TYR PRO SEQRES 22 B 479 GLU ASP LEU VAL LYS ASP THR ALA GLY LEU THR ASP TRP SEQRES 23 B 479 SER PHE VAL ARG ASP GLY ASP LEU ARG LEU ALA HIS GLN SEQRES 24 B 479 LYS LEU ASP PHE LEU GLY VAL ASN TYR TYR SER PRO THR SEQRES 25 B 479 LEU VAL SER GLU ALA ASP GLY SER GLY THR HIS ASN SER SEQRES 26 B 479 ASP GLY HIS GLY ARG SER ALA HIS SER PRO TRP PRO GLY SEQRES 27 B 479 ALA ASP ARG VAL ALA PHE HIS GLN PRO PRO GLY GLU THR SEQRES 28 B 479 THR ALA MET GLY TRP ALA VAL ASP PRO SER GLY LEU TYR SEQRES 29 B 479 GLU LEU LEU ARG ARG LEU SER SER ASP PHE PRO ALA LEU SEQRES 30 B 479 PRO LEU VAL ILE THR GLU ASN GLY ALA ALA PHE HIS ASP SEQRES 31 B 479 TYR ALA ASP PRO GLU GLY ASN VAL ASN ASP PRO GLU ARG SEQRES 32 B 479 ILE ALA TYR VAL ARG ASP HIS LEU ALA ALA VAL HIS ARG SEQRES 33 B 479 ALA ILE LYS ASP GLY SER ASP VAL ARG GLY TYR PHE LEU SEQRES 34 B 479 TRP SER LEU LEU ASP ASN PHE GLU TRP ALA HIS GLY TYR SEQRES 35 B 479 SER LYS ARG PHE GLY ALA VAL TYR VAL ASP TYR PRO THR SEQRES 36 B 479 GLY THR ARG ILE PRO LYS ALA SER ALA ARG TRP TYR ALA SEQRES 37 B 479 GLU VAL ALA ARG THR GLY VAL LEU PRO THR ALA HET GLC C 1 11 HET FRU C 2 12 HET SO4 A 610 5 HET SO4 B 620 5 HET SO4 B 630 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 GLC C6 H12 O6 FORMUL 3 FRU C6 H12 O6 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *595(H2 O) HELIX 1 1 ALA A 29 GLU A 34 1 6 HELIX 2 2 SER A 45 ARG A 52 1 8 HELIX 3 3 VAL A 57 ASP A 61 5 5 HELIX 4 4 ASP A 68 LEU A 83 1 16 HELIX 5 5 ALA A 93 GLN A 98 1 6 HELIX 6 6 PRO A 99 ARG A 102 5 4 HELIX 7 7 LEU A 106 LYS A 123 1 18 HELIX 8 8 PRO A 137 ALA A 143 1 7 HELIX 9 9 ARG A 149 GLY A 167 1 19 HELIX 10 10 GLU A 178 GLY A 188 1 11 HELIX 11 11 ASP A 198 LEU A 224 1 27 HELIX 12 12 SER A 245 ASN A 260 1 16 HELIX 13 13 ASN A 260 GLY A 270 1 11 HELIX 14 14 PRO A 273 THR A 280 1 8 HELIX 15 15 GLY A 292 HIS A 298 1 7 HELIX 16 16 ASP A 359 PHE A 374 1 16 HELIX 17 17 ASP A 400 ASP A 420 1 21 HELIX 18 18 GLU A 437 LYS A 444 5 8 HELIX 19 19 LYS A 461 GLY A 474 1 14 HELIX 20 20 ALA B 29 GLU B 34 1 6 HELIX 21 21 SER B 45 ARG B 52 1 8 HELIX 22 22 VAL B 57 ASP B 61 5 5 HELIX 23 23 ASP B 68 LEU B 83 1 16 HELIX 24 24 ALA B 93 GLN B 98 1 6 HELIX 25 25 LEU B 106 LYS B 123 1 18 HELIX 26 26 PRO B 137 ALA B 143 1 7 HELIX 27 27 GLU B 148 GLY B 167 1 20 HELIX 28 28 GLU B 178 GLY B 188 1 11 HELIX 29 29 ASP B 198 LEU B 224 1 27 HELIX 30 30 SER B 245 ASN B 260 1 16 HELIX 31 31 ASN B 260 GLY B 270 1 11 HELIX 32 32 PRO B 273 THR B 280 1 8 HELIX 33 33 GLY B 292 HIS B 298 1 7 HELIX 34 34 ASP B 359 PHE B 374 1 16 HELIX 35 35 ASP B 400 ASP B 420 1 21 HELIX 36 36 GLU B 437 LYS B 444 5 8 HELIX 37 37 LYS B 461 GLY B 474 1 14 SHEET 1 AA 2 LEU A 16 THR A 17 0 SHEET 2 AA 2 VAL A 475 LEU A 476 -1 O LEU A 476 N LEU A 16 SHEET 1 AB 9 LEU A 23 ALA A 27 0 SHEET 2 AB 9 VAL A 424 TRP A 430 1 O ARG A 425 N LEU A 23 SHEET 3 AB 9 LEU A 379 ASN A 384 1 O LEU A 379 N ARG A 425 SHEET 4 AB 9 LEU A 304 ASN A 307 1 O LEU A 304 N VAL A 380 SHEET 5 AB 9 GLN A 229 ASN A 235 1 O VAL A 232 N GLY A 305 SHEET 6 AB 9 THR A 172 ASN A 177 1 O TRP A 173 N SER A 231 SHEET 7 AB 9 GLN A 126 TYR A 132 1 O PRO A 127 N THR A 172 SHEET 8 AB 9 ALA A 87 SER A 91 1 O TYR A 88 N VAL A 128 SHEET 9 AB 9 LEU A 23 ALA A 27 1 O SER A 26 N ARG A 89 SHEET 1 AC 3 VAL A 239 PRO A 241 0 SHEET 2 AC 3 THR A 312 SER A 315 1 O THR A 312 N ARG A 240 SHEET 3 AC 3 ALA A 343 HIS A 345 -1 O ALA A 343 N SER A 315 SHEET 1 AD 2 VAL A 449 VAL A 451 0 SHEET 2 AD 2 ARG A 458 PRO A 460 -1 O ILE A 459 N TYR A 450 SHEET 1 BA 2 LEU B 16 THR B 17 0 SHEET 2 BA 2 VAL B 475 LEU B 476 -1 O LEU B 476 N LEU B 16 SHEET 1 BB 9 LEU B 23 ALA B 27 0 SHEET 2 BB 9 VAL B 424 TRP B 430 1 O ARG B 425 N LEU B 23 SHEET 3 BB 9 LEU B 379 ASN B 384 1 O LEU B 379 N ARG B 425 SHEET 4 BB 9 PHE B 303 ASN B 307 1 O LEU B 304 N VAL B 380 SHEET 5 BB 9 GLN B 229 ASN B 235 1 O VAL B 232 N GLY B 305 SHEET 6 BB 9 THR B 172 ASN B 177 1 O TRP B 173 N SER B 231 SHEET 7 BB 9 GLN B 126 TYR B 132 1 O PRO B 127 N THR B 172 SHEET 8 BB 9 ALA B 87 SER B 91 1 O TYR B 88 N VAL B 128 SHEET 9 BB 9 LEU B 23 ALA B 27 1 O SER B 26 N ARG B 89 SHEET 1 BC 3 VAL B 239 PRO B 241 0 SHEET 2 BC 3 THR B 312 SER B 315 1 O THR B 312 N ARG B 240 SHEET 3 BC 3 ALA B 343 HIS B 345 -1 O ALA B 343 N SER B 315 SHEET 1 BD 2 VAL B 449 VAL B 451 0 SHEET 2 BD 2 ARG B 458 PRO B 460 -1 O ILE B 459 N TYR B 450 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.40 CISPEP 1 ALA A 193 PRO A 194 0 0.98 CISPEP 2 TRP A 430 SER A 431 0 2.13 CISPEP 3 ALA B 193 PRO B 194 0 0.94 CISPEP 4 TRP B 430 SER B 431 0 2.91 CRYST1 96.700 111.280 185.310 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010341 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005396 0.00000