HEADER VIRAL PROTEIN 11-MAY-99 1GP8 TITLE NMR SOLUTION STRUCTURE OF THE COAT PROTEIN-BINDING DOMAIN OF TITLE 2 BACTERIOPHAGE P22 SCAFFOLDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (SCAFFOLDING PROTEIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL FUNCTIONAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P22; SOURCE 3 ORGANISM_TAXID: 10754; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: NF1829; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS SCAFFOLDING PROTEIN, COAT PROTEIN-BINDING DOMAIN, HELIX-LOOP-HELIX KEYWDS 2 MOTIF, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 35 AUTHOR Y.SUN,M.H.PARKER,P.WEIGELE,S.CASJENS,P.E.PREVELIGE JR.,N.R.KRISHNA REVDAT 6 27-DEC-23 1GP8 1 REMARK REVDAT 5 23-FEB-22 1GP8 1 REMARK REVDAT 4 24-FEB-09 1GP8 1 VERSN REVDAT 3 06-JAN-04 1GP8 3 ATOM REVDAT 2 24-APR-00 1GP8 1 JRNL HEADER REVDAT 1 17-MAY-99 1GP8 0 JRNL AUTH Y.SUN,M.H.PARKER,P.WEIGELE,S.CASJENS,P.E.PREVELIGE JR., JRNL AUTH 2 N.R.KRISHNA JRNL TITL STRUCTURE OF THE COAT PROTEIN-BINDING DOMAIN OF THE JRNL TITL 2 SCAFFOLDING PROTEIN FROM A DOUBLE-STRANDED DNA VIRUS. JRNL REF J.MOL.BIOL. V. 297 1195 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10764583 JRNL DOI 10.1006/JMBI.2000.3620 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. THE REFINEMENT WAS CARRIED OUT ON THE C- REMARK 3 TERMINAL 40-RESIDUE SEGMENT. REMARK 4 REMARK 4 1GP8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001043. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O, 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY; 15N EDITED REMARK 210 3D NOESY-HSQC; TOCSYHMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AM600; AVANCE600; INOVA600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: EXPERIMENTS WERE DONE ON THE C-TERMINAL 67-RESIDUE (238 REMARK 210 -303 PLUS ALANINE AT THE N-TERNINUS) SCAFFOLDING PROTEIN. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 291 H LEU A 295 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 272 -71.08 -43.44 REMARK 500 1 ALA A 284 -76.11 -77.47 REMARK 500 1 SER A 285 43.45 -85.49 REMARK 500 1 LYS A 298 -70.46 -44.92 REMARK 500 1 LYS A 300 37.10 -89.62 REMARK 500 2 ASP A 267 -69.70 -101.43 REMARK 500 2 VAL A 268 -160.15 -72.03 REMARK 500 2 SER A 269 -33.66 -39.03 REMARK 500 2 ALA A 282 -77.21 -61.76 REMARK 500 2 ALA A 284 -77.53 -65.48 REMARK 500 2 SER A 285 41.26 -85.89 REMARK 500 2 ASP A 288 48.92 -89.45 REMARK 500 3 THR A 265 163.48 -48.18 REMARK 500 3 VAL A 268 -172.96 -68.78 REMARK 500 3 LYS A 273 -70.31 -41.98 REMARK 500 3 ALA A 275 -77.85 -42.00 REMARK 500 3 ALA A 284 -66.69 -103.69 REMARK 500 3 SER A 285 46.14 -85.19 REMARK 500 3 LYS A 286 -34.49 -138.33 REMARK 500 3 LYS A 300 46.07 -85.35 REMARK 500 4 ASP A 267 59.24 -66.14 REMARK 500 4 VAL A 268 -166.02 -78.09 REMARK 500 4 SER A 269 -39.46 -39.85 REMARK 500 4 ALA A 275 -73.63 -43.54 REMARK 500 4 ALA A 284 -75.70 -72.25 REMARK 500 4 SER A 285 43.68 -85.60 REMARK 500 4 GLU A 290 -70.33 -44.27 REMARK 500 5 ASP A 267 -176.29 -69.98 REMARK 500 5 VAL A 268 -163.72 -77.59 REMARK 500 5 ALA A 275 -70.74 -42.21 REMARK 500 5 LYS A 278 -72.64 -43.55 REMARK 500 5 ALA A 284 -70.15 -79.89 REMARK 500 5 SER A 285 45.01 -85.32 REMARK 500 5 LYS A 286 -31.17 -134.57 REMARK 500 5 LYS A 294 -72.40 -43.04 REMARK 500 6 VAL A 268 171.91 -45.45 REMARK 500 6 ASN A 272 -70.71 -61.37 REMARK 500 6 ALA A 284 -71.38 -73.91 REMARK 500 6 SER A 285 42.52 -85.35 REMARK 500 7 LYS A 273 -72.41 -42.87 REMARK 500 7 ALA A 284 -68.69 -90.50 REMARK 500 7 SER A 285 44.22 -83.14 REMARK 500 7 LYS A 286 -30.69 -134.81 REMARK 500 7 LYS A 294 -72.85 -43.24 REMARK 500 8 VAL A 268 -166.64 -56.20 REMARK 500 8 LYS A 273 -72.91 -42.44 REMARK 500 8 ALA A 275 -84.84 -42.63 REMARK 500 8 LYS A 278 -74.46 -46.94 REMARK 500 8 ALA A 282 -73.10 -54.33 REMARK 500 8 ALA A 284 -81.70 -68.80 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1GP8 A 264 303 UNP P26748 VG08_BPP22 264 303 SEQRES 1 A 40 ILE THR GLY ASP VAL SER ALA ALA ASN LYS ASP ALA ILE SEQRES 2 A 40 ARG LYS GLN MET ASP ALA ALA ALA SER LYS GLY ASP VAL SEQRES 3 A 40 GLU THR TYR ARG LYS LEU LYS ALA LYS LEU LYS GLY ILE SEQRES 4 A 40 ARG HELIX 1 1 VAL A 268 SER A 285 1 18 HELIX 2 2 ASP A 288 LYS A 300 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1