data_1GQU # _entry.id 1GQU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1GQU pdb_00001gqu 10.2210/pdb1gqu/pdb PDBE EBI-8572 ? ? WWPDB D_1290008572 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-05 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GQU _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-12-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abrescia, N.G.A.' 1 'Thompson, A.' 2 'Huynh-Dinh, T.' 3 'Subirana, J.A.' 4 # _citation.id primary _citation.title 'Crystal Structure of an Antiparallel DNA Fragment with Hoogsteen Base Pairing' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 99 _citation.page_first 2806 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11880632 _citation.pdbx_database_id_DOI 10.1073/PNAS.052675499 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abrescia, N.G.A.' 1 ? primary 'Thompson, A.' 2 ? primary 'Huynh-Dinh, T.' 3 ? primary 'Subirana, J.A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'(*AP*TP*AP*UP*AP*T)-3') ; 1872.111 4 ? ? ? ? 2 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DA)(BRU)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ATAUAT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DA n 1 4 BRU n 1 5 DA n 1 6 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 BRU 4 4 4 BRU BRU A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n B 1 1 DA 1 7 7 DA DA B . n B 1 2 DT 2 8 8 DT DT B . n B 1 3 DA 3 9 9 DA DA B . n B 1 4 BRU 4 10 10 BRU BRU B . n B 1 5 DA 5 11 11 DA DA B . n B 1 6 DT 6 12 12 DT DT B . n C 1 1 DA 1 13 13 DA DA C . n C 1 2 DT 2 14 14 DT DT C . n C 1 3 DA 3 15 15 DA DA C . n C 1 4 BRU 4 16 16 BRU BRU C . n C 1 5 DA 5 17 17 DA DA C . n C 1 6 DT 6 18 18 DT DT C . n D 1 1 DA 1 19 19 DA DA D . n D 1 2 DT 2 20 20 DT DT D . n D 1 3 DA 3 21 21 DA DA D . n D 1 4 BRU 4 22 22 BRU BRU D . n D 1 5 DA 5 23 23 DA DA D . n D 1 6 DT 6 24 24 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 2001 2001 HOH HOH A . E 2 HOH 2 2002 2002 HOH HOH A . E 2 HOH 3 2003 2003 HOH HOH A . E 2 HOH 4 2004 2004 HOH HOH A . E 2 HOH 5 2005 2005 HOH HOH A . E 2 HOH 6 2006 2006 HOH HOH A . E 2 HOH 7 2007 2007 HOH HOH A . E 2 HOH 8 2008 2008 HOH HOH A . E 2 HOH 9 2009 2009 HOH HOH A . E 2 HOH 10 2010 2010 HOH HOH A . E 2 HOH 11 2011 2011 HOH HOH A . E 2 HOH 12 2012 2012 HOH HOH A . E 2 HOH 13 2013 2013 HOH HOH A . E 2 HOH 14 2014 2014 HOH HOH A . F 2 HOH 1 2001 2001 HOH HOH B . F 2 HOH 2 2002 2002 HOH HOH B . F 2 HOH 3 2003 2003 HOH HOH B . F 2 HOH 4 2004 2004 HOH HOH B . F 2 HOH 5 2005 2005 HOH HOH B . F 2 HOH 6 2006 2006 HOH HOH B . F 2 HOH 7 2007 2007 HOH HOH B . F 2 HOH 8 2008 2008 HOH HOH B . F 2 HOH 9 2009 2009 HOH HOH B . F 2 HOH 10 2010 2010 HOH HOH B . F 2 HOH 11 2011 2011 HOH HOH B . F 2 HOH 12 2012 2012 HOH HOH B . G 2 HOH 1 2001 2001 HOH HOH C . G 2 HOH 2 2002 2002 HOH HOH C . G 2 HOH 3 2003 2003 HOH HOH C . G 2 HOH 4 2004 2004 HOH HOH C . G 2 HOH 5 2005 2005 HOH HOH C . G 2 HOH 6 2006 2006 HOH HOH C . G 2 HOH 7 2007 2007 HOH HOH C . G 2 HOH 8 2008 2008 HOH HOH C . H 2 HOH 1 2001 2001 HOH HOH D . H 2 HOH 2 2002 2002 HOH HOH D . H 2 HOH 3 2003 2003 HOH HOH D . H 2 HOH 4 2004 2004 HOH HOH D . H 2 HOH 5 2005 2005 HOH HOH D . H 2 HOH 6 2006 2006 HOH HOH D . H 2 HOH 7 2007 2007 HOH HOH D . H 2 HOH 8 2009 2009 HOH HOH D . H 2 HOH 9 2010 2010 HOH HOH D . H 2 HOH 10 2011 2011 HOH HOH D . H 2 HOH 11 2012 2012 HOH HOH D . H 2 HOH 12 2013 2013 HOH HOH D . H 2 HOH 13 2014 2014 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SCALEIT 'data scaling' . ? 4 MLPHARE phasing . ? 5 # _cell.entry_id 1GQU _cell.length_a 23.960 _cell.length_b 48.950 _cell.length_c 32.240 _cell.angle_alpha 90.00 _cell.angle_beta 93.27 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GQU _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 1GQU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.20 _exptl_crystal.description 'FOR MORE DETAILS ON DATA STATISTICS SEE PAPER' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 6.00' # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARCCD _diffrn_detector.pdbx_collection_date 2001-03-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.919 1.0 2 0.855 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.919,0.855 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1GQU _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 2591 _reflns.number_all ? _reflns.percent_possible_obs 90.3 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 68.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1GQU _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 2547 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs 0.22 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.2 _refine.ls_number_reflns_R_free 240 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'FOR MORE DETAILS ON DATA STATISTICS SEE PAPER' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 480 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 527 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0089 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.17 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.5 _refine_ls_shell.d_res_low 2.61 _refine_ls_shell.number_reflns_R_work 273 _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 DNA-RNA.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER_REP.TOP # _database_PDB_matrix.entry_id 1GQU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1GQU _struct.title 'Crystal structure of an alternating A-T oligonucleotide fragment with Hoogsteen base pairing' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GQU _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, DNA/RNA, NEW DNA STRUCTURE, HOOGSTEEN BASE PAIRING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1GQU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 1GQU _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GQU A 1 ? 6 ? 1GQU 1 ? 6 ? 1 6 2 1 1GQU B 1 ? 6 ? 1GQU 7 ? 12 ? 7 12 3 1 1GQU C 1 ? 6 ? 1GQU 13 ? 18 ? 13 18 4 1 1GQU D 1 ? 6 ? 1GQU 19 ? 24 ? 19 24 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 author_and_software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 3 "O3'" ? ? ? 1_555 A BRU 4 P ? ? A DA 3 A BRU 4 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A BRU 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A BRU 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale3 covale both ? B DA 3 "O3'" ? ? ? 1_555 B BRU 4 P ? ? B DA 9 B BRU 10 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale4 covale both ? B BRU 4 "O3'" ? ? ? 1_555 B DA 5 P ? ? B BRU 10 B DA 11 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale5 covale both ? C DA 3 "O3'" ? ? ? 1_555 C BRU 4 P ? ? C DA 15 C BRU 16 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale6 covale both ? C BRU 4 "O3'" ? ? ? 1_555 C DA 5 P ? ? C BRU 16 C DA 17 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale7 covale both ? D DA 3 "O3'" ? ? ? 1_555 D BRU 4 P ? ? D DA 21 D BRU 22 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale8 covale both ? D BRU 4 "O3'" ? ? ? 1_555 D DA 5 P ? ? D BRU 22 D DA 23 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 1 B DT 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 B DT 6 N3 ? ? A DA 1 B DT 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 5 N7 ? ? A DT 2 B DA 11 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 2 B DA 11 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B BRU 4 O4 ? ? A DA 3 B BRU 10 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog6 hydrog ? ? A DA 3 N7 ? ? ? 1_555 B BRU 4 N3 ? ? A DA 3 B BRU 10 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog7 hydrog ? ? A BRU 4 N3 ? ? ? 1_555 B DA 3 N7 ? ? A BRU 4 B DA 9 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog8 hydrog ? ? A BRU 4 O4 ? ? ? 1_555 B DA 3 N6 ? ? A BRU 4 B DA 9 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog10 hydrog ? ? A DA 5 N7 ? ? ? 1_555 B DT 2 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 1 N7 ? ? A DT 6 B DA 7 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 6 B DA 7 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog13 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D BRU 4 O4 ? ? C DA 13 D BRU 22 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog14 hydrog ? ? C DA 1 N7 ? ? ? 1_555 D BRU 4 N3 ? ? C DA 13 D BRU 22 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog15 hydrog ? ? C DT 2 O2 ? ? ? 1_555 C DA 5 N6 ? ? C DT 14 C DA 17 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog16 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 3 N7 ? ? C DT 14 D DA 21 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 14 D DA 21 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 15 D DT 20 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? C DA 3 N7 ? ? ? 1_555 D DT 2 N3 ? ? C DA 15 D DT 20 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? C BRU 4 N3 ? ? ? 1_555 D DA 1 N7 ? ? C BRU 16 D DA 19 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog21 hydrog ? ? C BRU 4 O4 ? ? ? 1_555 D DA 1 N6 ? ? C BRU 16 D DA 19 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 7 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.054 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 4 A BRU 4 ? DU ? 2 B BRU 4 B BRU 10 ? DU ? 3 C BRU 4 C BRU 16 ? DU ? 4 D BRU 4 D BRU 22 ? DU ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DT OP3 O N N 70 DT P P N N 71 DT OP1 O N N 72 DT OP2 O N N 73 DT "O5'" O N N 74 DT "C5'" C N N 75 DT "C4'" C N R 76 DT "O4'" O N N 77 DT "C3'" C N S 78 DT "O3'" O N N 79 DT "C2'" C N N 80 DT "C1'" C N R 81 DT N1 N N N 82 DT C2 C N N 83 DT O2 O N N 84 DT N3 N N N 85 DT C4 C N N 86 DT O4 O N N 87 DT C5 C N N 88 DT C7 C N N 89 DT C6 C N N 90 DT HOP3 H N N 91 DT HOP2 H N N 92 DT "H5'" H N N 93 DT "H5''" H N N 94 DT "H4'" H N N 95 DT "H3'" H N N 96 DT "HO3'" H N N 97 DT "H2'" H N N 98 DT "H2''" H N N 99 DT "H1'" H N N 100 DT H3 H N N 101 DT H71 H N N 102 DT H72 H N N 103 DT H73 H N N 104 DT H6 H N N 105 HOH O O N N 106 HOH H1 H N N 107 HOH H2 H N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DT OP3 P sing N N 73 DT OP3 HOP3 sing N N 74 DT P OP1 doub N N 75 DT P OP2 sing N N 76 DT P "O5'" sing N N 77 DT OP2 HOP2 sing N N 78 DT "O5'" "C5'" sing N N 79 DT "C5'" "C4'" sing N N 80 DT "C5'" "H5'" sing N N 81 DT "C5'" "H5''" sing N N 82 DT "C4'" "O4'" sing N N 83 DT "C4'" "C3'" sing N N 84 DT "C4'" "H4'" sing N N 85 DT "O4'" "C1'" sing N N 86 DT "C3'" "O3'" sing N N 87 DT "C3'" "C2'" sing N N 88 DT "C3'" "H3'" sing N N 89 DT "O3'" "HO3'" sing N N 90 DT "C2'" "C1'" sing N N 91 DT "C2'" "H2'" sing N N 92 DT "C2'" "H2''" sing N N 93 DT "C1'" N1 sing N N 94 DT "C1'" "H1'" sing N N 95 DT N1 C2 sing N N 96 DT N1 C6 sing N N 97 DT C2 O2 doub N N 98 DT C2 N3 sing N N 99 DT N3 C4 sing N N 100 DT N3 H3 sing N N 101 DT C4 O4 doub N N 102 DT C4 C5 sing N N 103 DT C5 C7 sing N N 104 DT C5 C6 doub N N 105 DT C7 H71 sing N N 106 DT C7 H72 sing N N 107 DT C7 H73 sing N N 108 DT C6 H6 sing N N 109 HOH O H1 sing N N 110 HOH O H2 sing N N 111 # _ndb_struct_conf_na.entry_id 1GQU _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 A DT 6 1_555 0.779 -3.761 1.546 -15.024 24.077 67.942 1 B_DA7:DT6_A B 7 ? A 6 ? 23 3 1 B DT 2 1_555 A DA 5 1_555 0.227 3.411 0.639 -21.961 3.037 -62.026 2 B_DT8:DA5_A B 8 ? A 5 ? 23 3 1 B DA 3 1_555 A BRU 4 1_555 0.178 -3.516 -0.331 5.525 10.827 66.288 3 B_DA9:BRU4_A B 9 ? A 4 ? 23 3 1 B BRU 4 1_555 A DA 3 1_555 -0.269 3.454 0.192 -8.238 -4.263 -62.434 4 B_BRU10:DA3_A B 10 ? A 3 ? 23 3 1 B DA 5 1_555 A DT 2 1_555 0.184 -3.774 -0.607 16.497 -3.693 57.511 5 B_DA11:DT2_A B 11 ? A 2 ? 23 3 1 B DT 6 1_555 A DA 1 1_555 -0.416 3.578 -0.860 10.571 -20.982 -64.774 6 B_DT12:DA1_A B 12 ? A 1 ? 23 3 1 C BRU 4 1_555 D DA 1 1_555 -0.382 3.625 -0.387 10.304 -19.316 -65.392 7 C_BRU16:DA19_D C 16 ? D 19 ? 23 3 1 C DA 3 1_555 D DT 2 1_555 0.745 -3.720 -0.303 8.844 -0.681 66.787 8 C_DA15:DT20_D C 15 ? D 20 ? 23 3 1 C DT 2 1_555 D DA 3 1_555 -0.554 3.880 0.382 -9.406 0.915 -61.758 9 C_DT14:DA21_D C 14 ? D 21 ? 23 3 1 C DA 1 1_555 D BRU 4 1_555 0.148 -3.611 0.258 -2.368 20.199 61.505 10 C_DA13:BRU22_D C 13 ? D 22 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 A DT 6 1_555 B DT 2 1_555 A DA 5 1_555 -1.051 -3.656 -1.718 92.215 -144.876 105.421 -2.052 0.385 0.156 -73.149 -46.560 174.995 1 BB_DA7DT8:DA5DT6_AA B 7 ? A 6 ? B 8 ? A 5 ? 1 B DT 2 1_555 A DA 5 1_555 B DA 3 1_555 A BRU 4 1_555 -1.831 4.582 -3.017 157.550 -74.214 -94.229 -2.524 -1.409 0.242 37.440 79.481 -176.023 2 BB_DT8DA9:BRU4DA5_AA B 8 ? A 5 ? B 9 ? A 4 ? 1 B DA 3 1_555 A BRU 4 1_555 B BRU 4 1_555 A DA 3 1_555 1.419 3.461 3.035 -92.362 149.353 -76.864 -2.389 0.303 0.167 -75.384 -46.618 -176.558 3 BB_DA9BRU10:DA3BRU4_AA B 9 ? A 4 ? B 10 ? A 3 ? 1 B BRU 4 1_555 A DA 3 1_555 B DA 5 1_555 A DT 2 1_555 -3.185 4.834 -0.811 161.154 -66.569 -163.488 -2.430 -1.624 -0.116 33.296 80.604 -179.191 4 BB_BRU10DA11:DT2DA3_AA B 10 ? A 3 ? B 11 ? A 2 ? 1 B DA 5 1_555 A DT 2 1_555 B DT 6 1_555 A DA 1 1_555 0.881 4.074 1.329 -95.135 147.802 -123.754 -2.154 0.365 -0.217 -74.111 -47.703 -178.008 5 BB_DA11DT12:DA1DT2_AA B 11 ? A 2 ? B 12 ? A 1 ? 1 B DT 6 1_555 A DA 1 1_555 C BRU 4 1_555 D DA 1 1_555 -0.518 4.303 -1.207 161.523 -58.121 -122.134 -2.211 -0.420 -0.118 29.236 81.250 -175.969 6 BC_DT12BRU16:DA19DA1_DA B 12 ? A 1 ? C 16 ? D 19 ? 1 C BRU 4 1_555 D DA 1 1_555 C DA 3 1_555 D DT 2 1_555 0.325 4.705 0.145 -98.855 148.416 -165.485 -2.347 0.166 -0.328 -74.214 -49.431 -179.788 7 CC_BRU16DA15:DT20DA19_DD C 16 ? D 19 ? C 15 ? D 20 ? 1 C DA 3 1_555 D DT 2 1_555 C DT 2 1_555 D DA 3 1_555 3.407 -4.889 0.099 -165.332 62.373 178.601 -2.445 -1.704 0.039 31.186 82.666 179.960 8 CC_DA15DT14:DA21DT20_DD C 15 ? D 20 ? C 14 ? D 21 ? 1 C DT 2 1_555 D DA 3 1_555 C DA 1 1_555 D BRU 4 1_555 0.586 4.192 2.368 -100.619 145.978 -114.568 -2.419 0.071 0.307 -73.166 -50.431 -178.538 9 CC_DT14DA13:BRU22DA21_DD C 14 ? D 21 ? C 13 ? D 22 ? # _atom_sites.entry_id 1GQU _atom_sites.fract_transf_matrix[1][1] 0.041736 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002384 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020429 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031068 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_