HEADER ELECTRON TRANSPORT 01-OCT-93 1GRX TITLE STRUCTURE OF E. COLI GLUTAREDOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: STRAIN N4830/PAHOB1[C14->S] KEYWDS ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.H.BUSHWELLER,M.BILLETER,L.A.HOLMGREN,K.WUTHRICH REVDAT 6 03-NOV-21 1GRX 1 REMARK SEQADV LINK REVDAT 5 21-DEC-11 1GRX 1 HET HETATM VERSN REVDAT 4 24-FEB-09 1GRX 1 VERSN REVDAT 3 01-APR-03 1GRX 1 JRNL REVDAT 2 24-JUN-98 1GRX 3 TITLE COMPND SOURCE EXPDTA REVDAT 2 2 3 KEYWDS REMARK DBREF SEQADV REVDAT 2 3 3 FTNOTE HET HETNAM FORMUL REVDAT 2 4 3 HELIX SHEET LINK CISPEP REVDAT 2 5 3 ATOM HETATM CONECT REVDAT 1 31-JAN-94 1GRX 0 JRNL AUTH T.H.XIA,J.H.BUSHWELLER,P.SODANO,M.BILLETER,O.BJORNBERG, JRNL AUTH 2 A.HOLMGREN,K.WUTHRICH JRNL TITL NMR STRUCTURE OF OXIDIZED ESCHERICHIA COLI GLUTAREDOXIN: JRNL TITL 2 COMPARISON WITH REDUCED E. COLI GLUTAREDOXIN AND JRNL TITL 3 FUNCTIONALLY RELATED PROTEINS. JRNL REF PROTEIN SCI. V. 1 310 1992 JRNL REFN ISSN 0961-8368 JRNL PMID 1304339 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.SODANO,T.H.XIA,J.H.BUSHWELLER,O.BJORNBERG,A.HOLMGREN, REMARK 1 AUTH 2 M.BILLETER,K.WUTHRICH REMARK 1 TITL SEQUENCE-SPECIFIC 1H NMR ASSIGNMENTS AND DETERMINATION OF REMARK 1 TITL 2 THE THREE-DIMENSIONAL STRUCTURE OF REDUCED E. COLI REMARK 1 TITL 3 GLUTAREDOXIN REMARK 1 REF J.MOL.BIOL. V. 221 1311 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA REMARK 3 AUTHORS : GUNTERT,BRAUN,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GRX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173683. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 3 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 8 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 11 CYS A 11 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 11 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 11 TYR A 35 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 13 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 13 PHE A 75 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 -71.17 -85.60 REMARK 500 1 ASP A 30 -58.66 -155.05 REMARK 500 1 GLN A 66 9.80 58.33 REMARK 500 1 LYS A 80 -73.78 -61.92 REMARK 500 1 LEU A 83 -71.06 -108.14 REMARK 500 2 SER A 9 147.28 130.33 REMARK 500 2 CYS A 11 95.85 58.47 REMARK 500 2 PRO A 55 92.58 -68.94 REMARK 500 2 GLU A 57 36.22 -152.74 REMARK 500 2 GLN A 66 27.73 42.62 REMARK 500 2 ASN A 82 -71.81 -118.27 REMARK 500 3 ARG A 8 -165.41 -179.57 REMARK 500 3 SER A 9 143.52 78.18 REMARK 500 3 CYS A 11 121.18 65.36 REMARK 500 3 ASP A 30 -53.18 -126.94 REMARK 500 3 ASP A 65 -84.98 58.27 REMARK 500 3 GLN A 66 10.28 -150.85 REMARK 500 3 ILE A 69 -62.56 -102.49 REMARK 500 3 LYS A 80 36.68 -84.59 REMARK 500 3 GLU A 81 -25.80 -142.02 REMARK 500 3 ASN A 82 -60.34 -94.15 REMARK 500 4 PHE A 6 75.33 -100.23 REMARK 500 4 CYS A 11 140.84 149.23 REMARK 500 4 ASP A 29 -2.35 -150.01 REMARK 500 4 GLN A 66 -17.56 78.08 REMARK 500 4 LEU A 83 -65.78 -128.88 REMARK 500 4 ASP A 84 90.50 97.45 REMARK 500 5 ARG A 8 157.25 90.25 REMARK 500 5 CYS A 11 123.04 -170.93 REMARK 500 5 ASP A 29 17.45 -145.75 REMARK 500 5 ASP A 65 -63.36 65.44 REMARK 500 5 GLN A 66 -17.29 -151.34 REMARK 500 5 ILE A 69 -62.94 -96.00 REMARK 500 5 LEU A 83 -76.10 -119.64 REMARK 500 5 ASP A 84 72.24 133.13 REMARK 500 6 ARG A 8 128.90 85.40 REMARK 500 6 SER A 9 147.01 -175.12 REMARK 500 6 GLU A 27 26.73 -77.90 REMARK 500 6 ASP A 29 22.54 -151.04 REMARK 500 6 ASP A 30 -73.37 -95.06 REMARK 500 6 GLN A 66 -6.34 65.23 REMARK 500 6 LEU A 83 -60.60 -102.55 REMARK 500 7 CYS A 11 116.51 70.37 REMARK 500 7 ASP A 29 27.53 -142.95 REMARK 500 7 ASP A 30 -74.90 -99.30 REMARK 500 7 ARG A 39 36.01 -78.12 REMARK 500 7 ALA A 40 -53.20 -164.17 REMARK 500 7 ASP A 65 -72.86 65.57 REMARK 500 7 GLN A 66 -13.13 -146.49 REMARK 500 8 CYS A 11 112.44 67.48 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.11 SIDE CHAIN REMARK 500 1 PHE A 31 0.08 SIDE CHAIN REMARK 500 1 TYR A 33 0.11 SIDE CHAIN REMARK 500 2 TYR A 13 0.19 SIDE CHAIN REMARK 500 2 ARG A 16 0.08 SIDE CHAIN REMARK 500 2 TYR A 35 0.13 SIDE CHAIN REMARK 500 2 ARG A 39 0.08 SIDE CHAIN REMARK 500 3 PHE A 6 0.12 SIDE CHAIN REMARK 500 3 PHE A 31 0.16 SIDE CHAIN REMARK 500 3 TYR A 35 0.17 SIDE CHAIN REMARK 500 4 TYR A 13 0.09 SIDE CHAIN REMARK 500 4 PHE A 75 0.09 SIDE CHAIN REMARK 500 5 ARG A 16 0.10 SIDE CHAIN REMARK 500 5 TYR A 33 0.09 SIDE CHAIN REMARK 500 5 TYR A 35 0.08 SIDE CHAIN REMARK 500 5 TYR A 72 0.06 SIDE CHAIN REMARK 500 5 PHE A 75 0.10 SIDE CHAIN REMARK 500 6 PHE A 6 0.10 SIDE CHAIN REMARK 500 6 TYR A 13 0.13 SIDE CHAIN REMARK 500 6 TYR A 33 0.12 SIDE CHAIN REMARK 500 6 ARG A 39 0.14 SIDE CHAIN REMARK 500 7 PHE A 6 0.15 SIDE CHAIN REMARK 500 7 TYR A 13 0.10 SIDE CHAIN REMARK 500 7 ARG A 16 0.08 SIDE CHAIN REMARK 500 7 PHE A 31 0.14 SIDE CHAIN REMARK 500 7 TYR A 33 0.10 SIDE CHAIN REMARK 500 7 ARG A 39 0.10 SIDE CHAIN REMARK 500 8 ARG A 8 0.13 SIDE CHAIN REMARK 500 8 TYR A 13 0.07 SIDE CHAIN REMARK 500 8 ARG A 16 0.29 SIDE CHAIN REMARK 500 8 TYR A 33 0.12 SIDE CHAIN REMARK 500 8 TYR A 35 0.13 SIDE CHAIN REMARK 500 9 TYR A 13 0.07 SIDE CHAIN REMARK 500 9 ARG A 28 0.10 SIDE CHAIN REMARK 500 9 TYR A 33 0.11 SIDE CHAIN REMARK 500 9 TYR A 35 0.10 SIDE CHAIN REMARK 500 9 TYR A 72 0.12 SIDE CHAIN REMARK 500 10 PHE A 6 0.12 SIDE CHAIN REMARK 500 10 ARG A 8 0.10 SIDE CHAIN REMARK 500 10 TYR A 13 0.07 SIDE CHAIN REMARK 500 10 ARG A 28 0.11 SIDE CHAIN REMARK 500 10 TYR A 33 0.09 SIDE CHAIN REMARK 500 10 ARG A 39 0.21 SIDE CHAIN REMARK 500 10 TYR A 72 0.10 SIDE CHAIN REMARK 500 11 TYR A 33 0.07 SIDE CHAIN REMARK 500 11 TYR A 35 0.12 SIDE CHAIN REMARK 500 11 ARG A 39 0.08 SIDE CHAIN REMARK 500 11 TYR A 72 0.09 SIDE CHAIN REMARK 500 11 PHE A 75 0.09 SIDE CHAIN REMARK 500 12 ARG A 16 0.12 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 80 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 86 DBREF 1GRX A 1 85 UNP P68688 GLRX1_ECOLI 1 85 SEQADV 1GRX SER A 14 UNP P68688 CYS 14 ENGINEERED MUTATION SEQRES 1 A 85 MET GLN THR VAL ILE PHE GLY ARG SER GLY CYS PRO TYR SEQRES 2 A 85 SER VAL ARG ALA LYS ASP LEU ALA GLU LYS LEU SER ASN SEQRES 3 A 85 GLU ARG ASP ASP PHE GLN TYR GLN TYR VAL ASP ILE ARG SEQRES 4 A 85 ALA GLU GLY ILE THR LYS GLU ASP LEU GLN GLN LYS ALA SEQRES 5 A 85 GLY LYS PRO VAL GLU THR VAL PRO GLN ILE PHE VAL ASP SEQRES 6 A 85 GLN GLN HIS ILE GLY GLY TYR THR ASP PHE ALA ALA TRP SEQRES 7 A 85 VAL LYS GLU ASN LEU ASP ALA HET GSH A 86 35 HETNAM GSH GLUTATHIONE FORMUL 2 GSH C10 H17 N3 O6 S HELIX 1 H1 TYR A 13 ARG A 28 1 16 HELIX 2 H2 THR A 44 GLY A 53 1 10 HELIX 3 H3 GLY A 71 LEU A 83 1 13 SHEET 1 S1 4 PHE A 31 ASP A 37 0 SHEET 2 S1 4 GLN A 2 GLY A 7 1 N ILE A 5 O GLN A 34 SHEET 3 S1 4 GLN A 61 VAL A 64 -1 N PHE A 63 O VAL A 4 SHEET 4 S1 4 GLN A 67 ILE A 69 -1 N ILE A 69 O ILE A 62 LINK SG CYS A 11 SG2 GSH A 86 1555 1555 2.10 CISPEP 1 VAL A 59 PRO A 60 1 -0.60 CISPEP 2 VAL A 59 PRO A 60 2 -2.32 CISPEP 3 VAL A 59 PRO A 60 3 -6.21 CISPEP 4 VAL A 59 PRO A 60 4 7.07 CISPEP 5 VAL A 59 PRO A 60 5 -10.10 CISPEP 6 VAL A 59 PRO A 60 6 -17.62 CISPEP 7 VAL A 59 PRO A 60 7 -10.31 CISPEP 8 VAL A 59 PRO A 60 8 -14.81 CISPEP 9 VAL A 59 PRO A 60 9 -0.41 CISPEP 10 VAL A 59 PRO A 60 10 -20.62 CISPEP 11 VAL A 59 PRO A 60 11 -0.28 CISPEP 12 VAL A 59 PRO A 60 12 2.48 CISPEP 13 VAL A 59 PRO A 60 13 -9.40 CISPEP 14 VAL A 59 PRO A 60 14 -20.80 CISPEP 15 VAL A 59 PRO A 60 15 -4.96 CISPEP 16 VAL A 59 PRO A 60 16 -21.18 CISPEP 17 VAL A 59 PRO A 60 17 -3.24 CISPEP 18 VAL A 59 PRO A 60 18 -0.19 CISPEP 19 VAL A 59 PRO A 60 19 -1.09 CISPEP 20 VAL A 59 PRO A 60 20 -16.90 SITE 1 AC1 6 CYS A 11 TYR A 13 SER A 14 THR A 58 SITE 2 AC1 6 VAL A 59 THR A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1