HEADER TRANSPORT PROTEIN 28-JAN-02 1GUN TITLE MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE (PARTIAL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDATE BINDING PROTEIN II; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: MOPII; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_TAXID: 1501; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSPORT PROTEIN, MOLBINDIN, MOLYBDATE BINDING, MOP EXPDTA X-RAY DIFFRACTION AUTHOR A.W.SCHUETTELKOPF,J.A.HARRISON,W.N.HUNTER REVDAT 8 13-DEC-23 1GUN 1 REMARK LINK REVDAT 7 02-MAY-12 1GUN 1 REMARK HET FORMUL HELIX REVDAT 7 2 1 SHEET LINK SITE CRYST1 REVDAT 7 3 1 MTRIX1 MTRIX2 MTRIX3 ATOM REVDAT 7 4 1 TER HETATM CONECT MASTER REVDAT 6 16-NOV-11 1GUN 1 COMPND REMARK DBREF VERSN REVDAT 6 2 1 SEQRES HET FORMUL LINK REVDAT 6 3 1 SITE ATOM TER HETATM REVDAT 6 4 1 CONECT MASTER REVDAT 5 16-MAR-10 1GUN 1 VERSN REVDAT 4 24-FEB-09 1GUN 1 VERSN REVDAT 3 06-JUN-06 1GUN 1 HETATM ATOM TER CONECT REVDAT 2 03-MAY-05 1GUN 1 JRNL REVDAT 1 08-FEB-02 1GUN 0 JRNL AUTH A.W.SCHUETTELKOPF,J.A.HARRISON,D.H.BOXER,W.N.HUNTER JRNL TITL PASSIVE ACQUISITION OF LIGAND BY THE MOPII MOLBINDIN FROM JRNL TITL 2 CLOSTRIDIUM PASTEURIANUM: STRUCTURES OF APO AND JRNL TITL 3 OXYANION-BOUND FORMS JRNL REF J.BIOL.CHEM. V. 277 15013 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11836258 JRNL DOI 10.1074/JBC.M201005200 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1815 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2933 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 3954 ; 1.908 ; 2.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.474 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1914 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 853 ; 0.227 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 252 ; 0.116 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 109 ; 0.214 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.223 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1977 ; 1.176 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3192 ; 2.084 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 956 ; 3.772 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 759 ; 6.454 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA SET WAS ORIGINALLY REMARK 3 PROCESSED/SCALED IN AN ORTHORHOMBIC SPACE GROUP, BUT COULD NOT REMARK 3 BE REFINED WITH THE ADDITIONAL CRYSTALLOGRAPHIC SYMMETRY. REMARK 4 REMARK 4 1GUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1290009313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36043 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 95 MM HEPES PH 7.5, 27% POLYETHYLENE REMARK 280 GLYCOL 400, 5% GLYCEROL, 190 MM CACL2, PH 7.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.40500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.40500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -0.01662 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 95.24000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2022 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2040 LIES ON A SPECIAL POSITION. REMARK 375 HOH C2015 LIES ON A SPECIAL POSITION. REMARK 375 HOH D2017 LIES ON A SPECIAL POSITION. REMARK 375 HOH D2037 LIES ON A SPECIAL POSITION. REMARK 375 HOH F2021 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS D 60 O HOH D 2035 2556 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 42 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP C 63 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP D 63 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP E 63 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 29 -165.91 -108.96 REMARK 500 ILE F 29 -167.10 -115.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2014 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1071 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 HOH A2035 O 65.7 REMARK 620 3 HOH A2036 O 65.5 70.7 REMARK 620 4 HOH A2038 O 69.4 83.6 134.0 REMARK 620 5 HOH A2038 O 79.3 145.0 96.6 83.1 REMARK 620 6 HOH A2040 O 144.3 129.8 145.3 80.1 79.1 REMARK 620 7 HOH A2040 O 143.8 129.8 145.7 79.6 78.9 0.5 REMARK 620 8 ASP B 63 OD1 118.9 66.9 127.6 69.2 135.7 62.9 63.0 REMARK 620 9 HOH B2025 O 126.3 68.6 74.0 130.9 140.8 87.6 88.1 63.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1069 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 63 OD1 REMARK 620 2 HOH D2032 O 67.4 REMARK 620 3 HOH D2033 O 63.8 74.0 REMARK 620 4 HOH D2036 O 68.7 84.5 132.3 REMARK 620 5 HOH D2036 O 73.8 140.8 93.8 76.7 REMARK 620 6 HOH D2037 O 140.1 133.3 144.7 79.1 76.5 REMARK 620 7 HOH D2037 O 140.0 133.2 144.8 78.9 76.5 0.2 REMARK 620 8 HOH D2038 O 131.5 74.8 77.5 137.0 139.8 88.2 88.4 REMARK 620 9 ASP E 63 OD1 119.8 64.2 128.6 72.9 137.5 69.2 69.1 64.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO A 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO A 1070 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1071 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO B 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO C 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO D 1070 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO D 1071 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO E 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOO F 1069 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GUG RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH TUNGSTATE REMARK 900 RELATED ID: 1GUO RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE REMARK 900 RELATED ID: 1GUS RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO1) REMARK 900 RELATED ID: 1GUT RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO2) DBREF 1GUN A 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUN B 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUN C 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUN D 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUN E 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUN F 1 68 UNP P08854 MOP2_CLOPA 1 68 SEQRES 1 A 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 A 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 A 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 A 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 A 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 A 68 ILE LEU ALA SEQRES 1 B 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 B 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 B 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 B 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 B 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 B 68 ILE LEU ALA SEQRES 1 C 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 C 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 C 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 C 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 C 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 C 68 ILE LEU ALA SEQRES 1 D 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 D 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 D 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 D 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 D 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 D 68 ILE LEU ALA SEQRES 1 E 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 E 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 E 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 E 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 E 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 E 68 ILE LEU ALA SEQRES 1 F 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 F 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 F 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 F 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 F 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 F 68 ILE LEU ALA HET MOO A1069 5 HET MOO A1070 5 HET CA A1071 1 HET MOO B1069 5 HET MOO C1069 5 HET CA D1069 1 HET MOO D1070 5 HET MOO D1071 5 HET MOO E1069 5 HET MOO F1069 5 HETNAM MOO MOLYBDATE ION HETNAM CA CALCIUM ION HETSYN MOO MOLYBDATE FORMUL 7 MOO 8(MO O4 2-) FORMUL 9 CA 2(CA 2+) FORMUL 17 HOH *164(H2 O) HELIX 1 1 LEU A 41 GLY A 48 1 8 HELIX 2 2 LYS A 60 VAL A 64 5 5 HELIX 3 3 LEU B 41 LEU B 47 1 7 HELIX 4 4 LYS B 60 VAL B 64 5 5 HELIX 5 5 ALA C 30 GLY C 32 5 3 HELIX 6 6 LEU C 41 LEU C 47 1 7 HELIX 7 7 LYS C 60 VAL C 64 5 5 HELIX 8 8 LEU D 41 GLY D 48 1 8 HELIX 9 9 LYS D 60 VAL D 64 5 5 HELIX 10 10 LEU E 41 GLY E 48 1 8 HELIX 11 11 LYS E 60 VAL E 64 5 5 HELIX 12 12 ALA F 30 GLY F 32 5 3 HELIX 13 13 LEU F 41 LEU F 47 1 7 HELIX 14 14 LYS F 60 VAL F 64 5 5 SHEET 1 AA 4 LYS A 34 SER A 40 0 SHEET 2 AA 4 THR A 22 ILE A 29 -1 O ALA A 23 N ILE A 39 SHEET 3 AA 4 ASN A 7 LYS A 18 -1 O LYS A 12 N GLU A 28 SHEET 4 AA 4 GLU A 54 VAL A 59 -1 O LEU A 55 N GLY A 11 SHEET 1 BA 4 LYS B 34 SER B 40 0 SHEET 2 BA 4 THR B 22 ILE B 29 -1 O ALA B 23 N ILE B 39 SHEET 3 BA 4 ASN B 7 LYS B 18 -1 O LYS B 12 N GLU B 28 SHEET 4 BA 4 GLU B 54 VAL B 59 -1 O LEU B 55 N GLY B 11 SHEET 1 CA 4 LYS C 34 SER C 40 0 SHEET 2 CA 4 THR C 22 GLU C 28 -1 O ALA C 23 N ILE C 39 SHEET 3 CA 4 ASN C 7 LYS C 18 -1 O LYS C 12 N GLU C 28 SHEET 4 CA 4 GLU C 54 VAL C 59 -1 O LEU C 55 N GLY C 11 SHEET 1 DA 4 LYS D 34 SER D 40 0 SHEET 2 DA 4 THR D 22 ILE D 29 -1 O ALA D 23 N ILE D 39 SHEET 3 DA 4 ASN D 7 LYS D 18 -1 O LYS D 12 N GLU D 28 SHEET 4 DA 4 GLU D 54 VAL D 59 -1 O LEU D 55 N GLY D 11 SHEET 1 EA 4 LYS E 34 SER E 40 0 SHEET 2 EA 4 THR E 22 ILE E 29 -1 O ALA E 23 N ILE E 39 SHEET 3 EA 4 ASN E 7 LYS E 18 -1 O LYS E 12 N GLU E 28 SHEET 4 EA 4 GLU E 54 VAL E 59 -1 O LEU E 55 N GLY E 11 SHEET 1 FA 4 LYS F 34 SER F 40 0 SHEET 2 FA 4 THR F 22 GLU F 28 -1 O ALA F 23 N ILE F 39 SHEET 3 FA 4 ASN F 7 LYS F 18 -1 O LYS F 12 N GLU F 28 SHEET 4 FA 4 GLU F 54 VAL F 59 -1 O LEU F 55 N GLY F 11 LINK OD1 ASP A 63 CA CA A1071 2555 1555 2.48 LINK CA CA A1071 O HOH A2035 1555 2555 2.93 LINK CA CA A1071 O HOH A2036 1555 2555 2.74 LINK CA CA A1071 O HOH A2038 1555 1555 2.66 LINK CA CA A1071 O HOH A2038 1555 2555 2.71 LINK CA CA A1071 O HOH A2040 1555 1555 2.70 LINK CA CA A1071 O HOH A2040 1555 2555 2.72 LINK CA CA A1071 OD1 ASP B 63 1555 2555 2.72 LINK CA CA A1071 O HOH B2025 1555 2555 2.90 LINK CA CA A1071 OD1 ASP C 63 1555 2555 2.37 LINK OD1 ASP D 63 CA CA D1069 1555 1555 2.58 LINK CA CA D1069 O HOH D2032 1555 1555 2.68 LINK CA CA D1069 O HOH D2033 1555 1555 2.65 LINK CA CA D1069 O HOH D2036 1555 1555 2.75 LINK CA CA D1069 O HOH D2036 1555 2556 2.90 LINK CA CA D1069 O HOH D2037 1555 1555 2.81 LINK CA CA D1069 O HOH D2037 1555 2556 2.82 LINK CA CA D1069 O HOH D2038 1555 1555 2.76 LINK CA CA D1069 OD1 ASP E 63 1555 1555 2.67 LINK CA CA D1069 OD1 ASP F 63 1555 1555 2.50 SITE 1 AC1 8 ILE A 39 SER A 40 SER A 43 SER B 4 SITE 2 AC1 8 ALA B 5 ARG B 6 LYS B 60 SER B 61 SITE 1 AC2 9 VAL A 20 VAL A 21 THR A 22 VAL B 20 SITE 2 AC2 9 VAL B 21 THR B 22 VAL C 20 VAL C 21 SITE 3 AC2 9 THR C 22 SITE 1 AC3 8 ASP A 63 HOH A2035 HOH A2036 HOH A2038 SITE 2 AC3 8 HOH A2040 ASP B 63 HOH B2025 ASP C 63 SITE 1 AC4 8 SER A 4 ALA A 5 ARG A 6 LYS A 60 SITE 2 AC4 8 SER A 61 ILE B 39 SER B 40 SER B 43 SITE 1 AC5 8 SER C 4 ALA C 5 ARG C 6 ILE C 39 SITE 2 AC5 8 SER C 40 SER C 43 LYS C 60 SER C 61 SITE 1 AC6 8 ASP D 63 HOH D2032 HOH D2033 HOH D2036 SITE 2 AC6 8 HOH D2037 HOH D2038 ASP E 63 ASP F 63 SITE 1 AC7 9 VAL D 20 VAL D 21 THR D 22 VAL E 20 SITE 2 AC7 9 VAL E 21 THR E 22 VAL F 20 VAL F 21 SITE 3 AC7 9 THR F 22 SITE 1 AC8 8 ILE D 39 SER D 40 SER D 43 SER E 4 SITE 2 AC8 8 ALA E 5 ARG E 6 LYS E 60 SER E 61 SITE 1 AC9 8 SER D 4 ALA D 5 ARG D 6 LYS D 60 SITE 2 AC9 8 SER D 61 ILE E 39 SER E 40 SER E 43 SITE 1 BC1 8 SER F 4 ALA F 5 ARG F 6 ILE F 39 SITE 2 BC1 8 SER F 40 SER F 43 LYS F 60 SER F 61 CRYST1 56.810 78.380 95.240 90.00 90.01 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017603 0.000000 0.000003 0.00000 SCALE2 0.000000 0.012758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010500 0.00000 MTRIX1 1 -0.460396 -0.836396 -0.297452 1.42400 1 MTRIX2 1 0.838776 -0.519585 0.162746 -2.28500 1 MTRIX3 1 -0.290671 -0.174568 0.940764 0.27600 1 MTRIX1 2 -0.431745 0.853971 -0.290395 -1.31100 1 MTRIX2 2 -0.854621 -0.490255 -0.171093 -2.45300 1 MTRIX3 2 -0.288476 0.174309 0.941487 -0.30100 1 MTRIX1 3 -0.999999 0.000758 -0.001366 -0.01200 1 MTRIX2 3 -0.000757 -1.000000 -0.000310 -0.07700 1 MTRIX3 3 -0.001366 -0.000309 0.999999 47.64000 1 MTRIX1 4 0.459381 0.837043 -0.297202 -1.42000 1 MTRIX2 4 -0.838102 0.519292 0.167097 2.20200 1 MTRIX3 4 0.294202 0.172324 0.940080 47.89300 1 MTRIX1 5 0.432542 -0.853649 -0.290157 1.31600 1 MTRIX2 5 0.853517 0.491391 -0.173332 2.36400 1 MTRIX3 5 0.290545 -0.172681 0.941151 47.34500 1