HEADER OXIDOREDUCTASE 04-FEB-02 1GUY TITLE STRUCTURAL BASIS FOR THERMOPHILIC PROTEIN STABILITY: STRUCTURES OF TITLE 2 THERMOPHILIC AND MESOPHILIC MALATE DEHYDROGENASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A, C; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROFLEXUS AURANTIACUS; SOURCE 3 ORGANISM_TAXID: 1108; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, OXIDOREDUCTASE, TRICARBOXYLIC ACID CYCLE, NAD EXPDTA X-RAY DIFFRACTION AUTHOR B.DALHUS,M.SARINEN,U.H.SAUER,P.EKLUND,K.JOHANSSON,A.KARLSSON, AUTHOR 2 S.RAMASWAMY,A.BJORK,B.SYNSTAD,K.NATERSTAD,R.SIREVAG,H.EKLUND REVDAT 4 13-DEC-23 1GUY 1 REMARK LINK REVDAT 3 24-FEB-09 1GUY 1 VERSN REVDAT 2 13-JUN-02 1GUY 1 JRNL REVDAT 1 15-FEB-02 1GUY 0 JRNL AUTH B.DALHUS,M.SAARINEN,U.H.SAUER,P.EKLUND,K.JOHANSSON, JRNL AUTH 2 A.KARLSSON,S.RAMASWAMY,A.BJORK,B.SYNSTAD,K.NATERSTAD, JRNL AUTH 3 R.SIREVAG,H.EKLUND JRNL TITL STRUCTURAL BASIS FOR THERMOPHILIC PROTEIN STABILITY: JRNL TITL 2 STRUCTURES OF THERMOPHILIC AND MESOPHILIC MALATE JRNL TITL 3 DEHYDROGENASES JRNL REF J.MOL.BIOL. V. 318 707 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12054817 JRNL DOI 10.1016/S0022-2836(02)00050-5 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2919001.800 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5641 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.330 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 39.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1290009375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35062 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MODIFICATION OF PDB ENTRY 1LDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-15% PEG400, 100 MM NAAC, PH 4.6, REMARK 280 40MM 5-15% PEG400, 100 MM NAAC, PH 4.6, 40MM CDAC, PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.66333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.32667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.32667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.66333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 160.00500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 92.37893 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.66333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 81 REMARK 465 ARG A 82 REMARK 465 LYS A 83 REMARK 465 PRO A 84 REMARK 465 GLY A 85 REMARK 465 MET A 86 REMARK 465 SER A 87 REMARK 465 ARG A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 LYS A 307 REMARK 465 SER A 308 REMARK 465 LEU A 309 REMARK 465 PRO C 81 REMARK 465 ARG C 82 REMARK 465 LYS C 83 REMARK 465 PRO C 84 REMARK 465 GLY C 85 REMARK 465 MET C 86 REMARK 465 LYS C 307 REMARK 465 SER C 308 REMARK 465 LEU C 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 10 39.77 -97.55 REMARK 500 ALA A 144 -54.13 -164.08 REMARK 500 PHE A 185 50.44 -103.26 REMARK 500 LYS A 221 -59.43 78.39 REMARK 500 TYR A 226 -31.57 -145.42 REMARK 500 ALA C 10 44.92 -94.20 REMARK 500 ALA C 144 -56.22 -156.65 REMARK 500 PHE C 185 46.98 -103.43 REMARK 500 LYS C 221 -59.65 68.41 REMARK 500 THR C 222 56.37 -113.69 REMARK 500 TYR C 226 -28.08 -145.50 REMARK 500 LYS C 278 138.01 -171.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2004 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH C2011 DISTANCE = 6.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C1309 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 159 OE1 REMARK 620 2 GLU A 159 OE2 48.6 REMARK 620 3 GLU C 159 OE2 135.7 87.1 REMARK 620 4 GLU C 159 OE1 177.6 133.5 46.5 REMARK 620 5 HOH C2064 O 108.9 117.0 91.1 71.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1308 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 165 OE1 REMARK 620 2 GLU A 165 OE2 48.0 REMARK 620 3 HOH A2010 O 136.0 88.1 REMARK 620 4 HOH C2106 O 92.4 88.9 87.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1310 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD1 REMARK 620 2 ASP A 200 OD2 54.2 REMARK 620 3 ASP A 243 OD1 158.1 109.1 REMARK 620 4 ASP A 243 OD2 108.7 79.7 50.6 REMARK 620 5 GLU A 277 OE1 87.0 86.0 107.2 145.6 REMARK 620 6 GLU A 277 OE2 109.5 139.4 92.3 137.5 54.3 REMARK 620 7 HOH A2143 O 77.6 123.0 106.5 90.6 123.1 80.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1309 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 281 OE1 REMARK 620 2 GLU A 281 OE2 48.3 REMARK 620 3 HOH A2097 O 170.1 140.3 REMARK 620 4 HOH A2098 O 84.5 103.7 87.8 REMARK 620 5 GLU C 281 O 93.7 76.6 93.8 177.2 REMARK 620 6 HOH C2124 O 80.4 124.3 93.3 88.5 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C1308 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2121 O REMARK 620 2 HOH A2123 O 64.6 REMARK 620 3 GLU C 165 OE1 92.7 152.3 REMARK 620 4 GLU C 165 OE2 87.8 139.1 48.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C1307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GUZ RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THERMOPHILIC PROTEIN STABILITY: STRUCTURES OF REMARK 900 THERMOPHILIC AND MESOPHILIC MALATE DEHYDROGENASES REMARK 900 RELATED ID: 1GV0 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THERMOPHILIC PROTEIN STABILITY: STRUCTURES OF REMARK 900 THERMOPHILIC AND MESOPHILIC MALATE DEHYDROGENASES REMARK 900 RELATED ID: 1GV1 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THERMOPHILIC PROTEIN STABILITY: STRUCTURES OF REMARK 900 THERMOPHILIC AND MESOPHILIC MALATE DEHYDROGENASES DBREF 1GUY A 1 309 UNP P80040 MDH_CHLAU 1 309 DBREF 1GUY C 1 309 UNP P80040 MDH_CHLAU 1 309 SEQRES 1 A 309 MET ARG LYS LYS ILE SER ILE ILE GLY ALA GLY PHE VAL SEQRES 2 A 309 GLY SER THR THR ALA HIS TRP LEU ALA ALA LYS GLU LEU SEQRES 3 A 309 GLY ASP ILE VAL LEU LEU ASP ILE VAL GLU GLY VAL PRO SEQRES 4 A 309 GLN GLY LYS ALA LEU ASP LEU TYR GLU ALA SER PRO ILE SEQRES 5 A 309 GLU GLY PHE ASP VAL ARG VAL THR GLY THR ASN ASN TYR SEQRES 6 A 309 ALA ASP THR ALA ASN SER ASP VAL ILE VAL VAL THR SER SEQRES 7 A 309 GLY ALA PRO ARG LYS PRO GLY MET SER ARG GLU ASP LEU SEQRES 8 A 309 ILE LYS VAL ASN ALA ASP ILE THR ARG ALA CYS ILE SER SEQRES 9 A 309 GLN ALA ALA PRO LEU SER PRO ASN ALA VAL ILE ILE MET SEQRES 10 A 309 VAL ASN ASN PRO LEU ASP ALA MET THR TYR LEU ALA ALA SEQRES 11 A 309 GLU VAL SER GLY PHE PRO LYS GLU ARG VAL ILE GLY GLN SEQRES 12 A 309 ALA GLY VAL LEU ASP ALA ALA ARG TYR ARG THR PHE ILE SEQRES 13 A 309 ALA MET GLU ALA GLY VAL SER VAL GLU ASP VAL GLN ALA SEQRES 14 A 309 MET LEU MET GLY GLY HIS GLY ASP GLU MET VAL PRO LEU SEQRES 15 A 309 PRO ARG PHE SER THR ILE SER GLY ILE PRO VAL SER GLU SEQRES 16 A 309 PHE ILE ALA PRO ASP ARG LEU ALA GLN ILE VAL GLU ARG SEQRES 17 A 309 THR ARG LYS GLY GLY GLY GLU ILE VAL ASN LEU LEU LYS SEQRES 18 A 309 THR GLY SER ALA TYR TYR ALA PRO ALA ALA ALA THR ALA SEQRES 19 A 309 GLN MET VAL GLU ALA VAL LEU LYS ASP LYS LYS ARG VAL SEQRES 20 A 309 MET PRO VAL ALA ALA TYR LEU THR GLY GLN TYR GLY LEU SEQRES 21 A 309 ASN ASP ILE TYR PHE GLY VAL PRO VAL ILE LEU GLY ALA SEQRES 22 A 309 GLY GLY VAL GLU LYS ILE LEU GLU LEU PRO LEU ASN GLU SEQRES 23 A 309 GLU GLU MET ALA LEU LEU ASN ALA SER ALA LYS ALA VAL SEQRES 24 A 309 ARG ALA THR LEU ASP THR LEU LYS SER LEU SEQRES 1 C 309 MET ARG LYS LYS ILE SER ILE ILE GLY ALA GLY PHE VAL SEQRES 2 C 309 GLY SER THR THR ALA HIS TRP LEU ALA ALA LYS GLU LEU SEQRES 3 C 309 GLY ASP ILE VAL LEU LEU ASP ILE VAL GLU GLY VAL PRO SEQRES 4 C 309 GLN GLY LYS ALA LEU ASP LEU TYR GLU ALA SER PRO ILE SEQRES 5 C 309 GLU GLY PHE ASP VAL ARG VAL THR GLY THR ASN ASN TYR SEQRES 6 C 309 ALA ASP THR ALA ASN SER ASP VAL ILE VAL VAL THR SER SEQRES 7 C 309 GLY ALA PRO ARG LYS PRO GLY MET SER ARG GLU ASP LEU SEQRES 8 C 309 ILE LYS VAL ASN ALA ASP ILE THR ARG ALA CYS ILE SER SEQRES 9 C 309 GLN ALA ALA PRO LEU SER PRO ASN ALA VAL ILE ILE MET SEQRES 10 C 309 VAL ASN ASN PRO LEU ASP ALA MET THR TYR LEU ALA ALA SEQRES 11 C 309 GLU VAL SER GLY PHE PRO LYS GLU ARG VAL ILE GLY GLN SEQRES 12 C 309 ALA GLY VAL LEU ASP ALA ALA ARG TYR ARG THR PHE ILE SEQRES 13 C 309 ALA MET GLU ALA GLY VAL SER VAL GLU ASP VAL GLN ALA SEQRES 14 C 309 MET LEU MET GLY GLY HIS GLY ASP GLU MET VAL PRO LEU SEQRES 15 C 309 PRO ARG PHE SER THR ILE SER GLY ILE PRO VAL SER GLU SEQRES 16 C 309 PHE ILE ALA PRO ASP ARG LEU ALA GLN ILE VAL GLU ARG SEQRES 17 C 309 THR ARG LYS GLY GLY GLY GLU ILE VAL ASN LEU LEU LYS SEQRES 18 C 309 THR GLY SER ALA TYR TYR ALA PRO ALA ALA ALA THR ALA SEQRES 19 C 309 GLN MET VAL GLU ALA VAL LEU LYS ASP LYS LYS ARG VAL SEQRES 20 C 309 MET PRO VAL ALA ALA TYR LEU THR GLY GLN TYR GLY LEU SEQRES 21 C 309 ASN ASP ILE TYR PHE GLY VAL PRO VAL ILE LEU GLY ALA SEQRES 22 C 309 GLY GLY VAL GLU LYS ILE LEU GLU LEU PRO LEU ASN GLU SEQRES 23 C 309 GLU GLU MET ALA LEU LEU ASN ALA SER ALA LYS ALA VAL SEQRES 24 C 309 ARG ALA THR LEU ASP THR LEU LYS SER LEU HET NAD A1307 44 HET CD A1308 1 HET CD A1309 1 HET CD A1310 1 HET NAD C1307 44 HET CD C1308 1 HET CD C1309 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CD CADMIUM ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 CD 5(CD 2+) FORMUL 10 HOH *315(H2 O) HELIX 1 1 GLY A 11 LYS A 24 1 14 HELIX 2 2 GLY A 37 GLU A 48 1 12 HELIX 3 3 ALA A 49 GLY A 54 1 6 HELIX 4 4 ASN A 64 ALA A 69 5 6 HELIX 5 5 LEU A 91 ALA A 107 1 17 HELIX 6 6 PRO A 108 SER A 110 5 3 HELIX 7 7 PRO A 121 GLY A 134 1 14 HELIX 8 8 PRO A 136 GLU A 138 5 3 HELIX 9 9 ALA A 144 GLY A 161 1 18 HELIX 10 10 SER A 163 GLU A 165 5 3 HELIX 11 11 HIS A 175 ASP A 177 5 3 HELIX 12 12 LEU A 182 ARG A 184 5 3 HELIX 13 13 SER A 194 PHE A 196 5 3 HELIX 14 14 ALA A 198 LYS A 211 1 14 HELIX 15 15 LYS A 211 LYS A 221 1 11 HELIX 16 16 TYR A 226 LYS A 242 1 17 HELIX 17 17 GLN A 257 GLY A 259 5 3 HELIX 18 18 ASN A 285 LEU A 306 1 22 HELIX 19 19 GLY C 11 LYS C 24 1 14 HELIX 20 20 GLY C 37 GLU C 48 1 12 HELIX 21 21 ALA C 49 GLY C 54 1 6 HELIX 22 22 ASN C 64 ALA C 69 5 6 HELIX 23 23 ARG C 88 ALA C 107 1 20 HELIX 24 24 PRO C 108 SER C 110 5 3 HELIX 25 25 PRO C 121 GLY C 134 1 14 HELIX 26 26 PRO C 136 GLU C 138 5 3 HELIX 27 27 ALA C 144 GLY C 161 1 18 HELIX 28 28 SER C 163 GLU C 165 5 3 HELIX 29 29 HIS C 175 ASP C 177 5 3 HELIX 30 30 LEU C 182 ARG C 184 5 3 HELIX 31 31 SER C 194 PHE C 196 5 3 HELIX 32 32 ALA C 198 LYS C 211 1 14 HELIX 33 33 LYS C 211 LYS C 221 1 11 HELIX 34 34 TYR C 226 LYS C 242 1 17 HELIX 35 35 GLN C 257 GLY C 259 5 3 HELIX 36 36 ASN C 285 LEU C 306 1 22 SHEET 1 AA 6 VAL A 59 THR A 62 0 SHEET 2 AA 6 ASP A 28 LEU A 32 1 O ILE A 29 N THR A 60 SHEET 3 AA 6 LYS A 4 ILE A 8 1 O ILE A 5 N VAL A 30 SHEET 4 AA 6 VAL A 73 VAL A 76 1 O VAL A 73 N SER A 6 SHEET 5 AA 6 VAL A 114 MET A 117 1 O VAL A 114 N ILE A 74 SHEET 6 AA 6 VAL A 140 GLY A 142 1 O ILE A 141 N MET A 117 SHEET 1 AB 3 VAL A 167 ALA A 169 0 SHEET 2 AB 3 SER A 186 ILE A 188 -1 O THR A 187 N GLN A 168 SHEET 3 AB 3 ILE A 191 PRO A 192 -1 O ILE A 191 N ILE A 188 SHEET 1 AC 2 MET A 172 GLY A 173 0 SHEET 2 AC 2 MET A 179 VAL A 180 -1 O VAL A 180 N MET A 172 SHEET 1 AD 3 ARG A 246 THR A 255 0 SHEET 2 AD 3 ASN A 261 GLY A 272 -1 N ASP A 262 O LEU A 254 SHEET 3 AD 3 GLY A 275 ILE A 279 -1 O GLY A 275 N GLY A 272 SHEET 1 CA 6 VAL C 59 THR C 62 0 SHEET 2 CA 6 ASP C 28 LEU C 32 1 O ILE C 29 N THR C 60 SHEET 3 CA 6 LYS C 4 ILE C 8 1 O ILE C 5 N VAL C 30 SHEET 4 CA 6 VAL C 73 VAL C 76 1 O VAL C 73 N SER C 6 SHEET 5 CA 6 VAL C 114 MET C 117 1 O VAL C 114 N ILE C 74 SHEET 6 CA 6 VAL C 140 GLY C 142 1 O ILE C 141 N MET C 117 SHEET 1 CB 3 VAL C 167 ALA C 169 0 SHEET 2 CB 3 SER C 186 ILE C 188 -1 O THR C 187 N GLN C 168 SHEET 3 CB 3 ILE C 191 PRO C 192 -1 O ILE C 191 N ILE C 188 SHEET 1 CC 2 MET C 172 GLY C 173 0 SHEET 2 CC 2 MET C 179 VAL C 180 -1 O VAL C 180 N MET C 172 SHEET 1 CD 3 ARG C 246 THR C 255 0 SHEET 2 CD 3 ASN C 261 GLY C 272 -1 N ASP C 262 O LEU C 254 SHEET 3 CD 3 GLY C 275 ILE C 279 -1 O GLY C 275 N GLY C 272 LINK OE1 GLU A 159 CD CD C1309 3664 1555 2.75 LINK OE2 GLU A 159 CD CD C1309 3664 1555 2.56 LINK OE1 GLU A 165 CD CD A1308 1555 1555 2.82 LINK OE2 GLU A 165 CD CD A1308 1555 1555 2.52 LINK OD1 ASP A 200 CD CD A1310 1555 1555 2.54 LINK OD2 ASP A 200 CD CD A1310 1555 1555 2.24 LINK OD1 ASP A 243 CD CD A1310 2655 1555 2.32 LINK OD2 ASP A 243 CD CD A1310 2655 1555 2.74 LINK OE1 GLU A 277 CD CD A1310 2655 1555 2.54 LINK OE2 GLU A 277 CD CD A1310 2655 1555 2.24 LINK OE1 GLU A 281 CD CD A1309 1555 1555 2.58 LINK OE2 GLU A 281 CD CD A1309 1555 1555 2.78 LINK CD CD A1308 O HOH A2010 1555 6765 2.49 LINK CD CD A1308 O HOH C2106 1555 1555 2.42 LINK CD CD A1309 O HOH A2097 1555 3664 2.55 LINK CD CD A1309 O HOH A2098 1555 3664 2.56 LINK CD CD A1309 O GLU C 281 1555 3664 2.50 LINK CD CD A1309 O HOH C2124 1555 3664 2.88 LINK CD CD A1310 O HOH A2143 1555 2655 1.92 LINK O HOH A2121 CD CD C1308 1555 1555 2.40 LINK O HOH A2123 CD CD C1308 1555 1555 2.90 LINK OE2 GLU C 159 CD CD C1309 1555 1555 2.64 LINK OE1 GLU C 159 CD CD C1309 1555 1555 2.90 LINK OE1 GLU C 165 CD CD C1308 1555 1555 2.76 LINK OE2 GLU C 165 CD CD C1308 1555 1555 2.62 LINK CD CD C1309 O HOH C2064 1555 1555 2.65 CISPEP 1 ASN A 120 PRO A 121 0 -0.24 CISPEP 2 ASN C 120 PRO C 121 0 -0.40 SITE 1 AC1 3 GLU A 165 HOH A2010 HOH C2106 SITE 1 AC2 6 GLU A 195 GLU A 281 HOH A2097 HOH A2098 SITE 2 AC2 6 GLU C 281 HOH C2124 SITE 1 AC3 4 ASP A 200 ASP A 243 GLU A 277 HOH A2143 SITE 1 AC4 3 HOH A2121 HOH A2123 GLU C 165 SITE 1 AC5 3 GLU A 159 GLU C 159 HOH C2064 SITE 1 AC6 23 GLY A 11 PHE A 12 VAL A 13 ASP A 33 SITE 2 AC6 23 ILE A 34 VAL A 35 SER A 78 GLY A 79 SITE 3 AC6 23 CYS A 102 VAL A 118 ASN A 119 ASN A 120 SITE 4 AC6 23 LEU A 147 HIS A 175 ALA A 225 PRO A 229 SITE 5 AC6 23 HOH A2074 HOH A2167 HOH A2168 HOH A2169 SITE 6 AC6 23 HOH A2170 HOH A2171 HOH A2172 SITE 1 AC7 22 GLY C 11 PHE C 12 VAL C 13 ASP C 33 SITE 2 AC7 22 ILE C 34 VAL C 35 TYR C 65 THR C 77 SITE 3 AC7 22 SER C 78 GLY C 79 CYS C 102 ASN C 119 SITE 4 AC7 22 ASN C 120 GLN C 143 LEU C 147 HIS C 175 SITE 5 AC7 22 ALA C 225 PRO C 229 HOH C2054 HOH C2140 SITE 6 AC7 22 HOH C2141 HOH C2142 CRYST1 106.670 106.670 103.990 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009375 0.005412 0.000000 0.00000 SCALE2 0.000000 0.010825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009616 0.00000