HEADER HYDROLASE 28-FEB-02 1GVY TITLE SUBSTRATE DISTORSION BY BETA-MANNANASE FROM PSEUDOMONAS CELLULOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN ENDO-1,4-BETA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-MANNANASE, MANNANASE A; COMPND 5 EC: 3.2.1.78; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: COMPLEX WITH 2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA- COMPND 9 MANNOTRIOSIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS CELLULOSA; SOURCE 3 ORGANISM_TAXID: 155077; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE, GLYCOSIDASE, MANNANASE, MANNAN, KEYWDS 2 FAMILY 26 EXPDTA X-RAY DIFFRACTION AUTHOR V.DUCROS,D.L.ZECHEL,H.J.GILBERT,L.SZABO,S.G.WITHERS,G.J.DAVIES REVDAT 5 13-DEC-23 1GVY 1 HETSYN REVDAT 4 29-JUL-20 1GVY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 14-DEC-16 1GVY 1 SOURCE KEYWDS JRNL REMARK REVDAT 3 2 1 VERSN FORMUL SHEET SITE REVDAT 3 3 1 MASTER REVDAT 2 24-FEB-09 1GVY 1 VERSN REVDAT 1 05-SEP-02 1GVY 0 JRNL AUTH V.DUCROS,D.L.ZECHEL,G.MURSHUDOV,H.J.GILBERT,L.SZABO,D.STOLL, JRNL AUTH 2 S.G.WITHERS,G.J.DAVIES JRNL TITL SUBSTRATE DISTORTION BY A BETA-MANNANASE: SNAPSHOTS OF THE JRNL TITL 2 MICHAELIS AND COVALENT-INTERMEDIATE COMPLEXES SUGGEST A B2,5 JRNL TITL 3 CONFORMATION FOR THE TRANSITION STATE JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 41 2824 2002 JRNL REFN ISSN 1433-7851 JRNL PMID 12203498 JRNL DOI 10.1002/1521-3773(20020802)41:15<2824::AID-ANIE2824>3.0.CO;2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.HOGG,E.J.WOO,D.N.BOLAM,V.A.MCKIE,H.J.GILBERT, REMARK 1 AUTH 2 R.W.PICKERSGILL REMARK 1 TITL CRYSTAL STRUCTURE OF MANNANASE 26A FROM PSEUDOMOMNAS REMARK 1 TITL 2 CELLULOSA AND ANALYSIS OF RESIDUES INVOLVED IN SUBSTRATE REMARK 1 TITL 3 BINDING REMARK 1 REF J.BIOL.CHEM. V. 276 31186 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11382747 REMARK 1 DOI 10.1074/JBC.M010290200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 48658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3456 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.1930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.968 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3177 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2715 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 4339 ; 1.723 ; 1.935 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 6304 ; 1.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3551 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 676 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 717 ; 0.226 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2701 ; 0.200 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3 ; 0.496 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 338 ; 0.130 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.105 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.109 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.233 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.172 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.108 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1880 ; 0.957 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3039 ; 1.567 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 2.262 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1300 ; 3.567 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. BREAK IN THE CHAIN A FROM RESIDUE 370 TO RESIDUE 372 REMARK 3 DUE TO DISORDER IN THE DENSITY. REMARK 4 REMARK 4 1GVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1290009452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97800 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50905 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.480 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.57 REMARK 200 R MERGE FOR SHELL (I) : 0.17200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1J9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH7.5, 26% PEG550, 9MM REMARK 280 ZNSO4, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.17150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.58575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.75725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 39 REMARK 465 ALA A 40 REMARK 465 ASP A 41 REMARK 465 VAL A 42 REMARK 465 PRO A 370 REMARK 465 ASN A 371 REMARK 465 GLY A 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 ARG A 89 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 123 O HOH A 2128 2.06 REMARK 500 OD1 ASP A 293 NH2 ARG A 296 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 177 CZ TYR A 177 CE2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 123 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 145 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 243 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 261 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 255 87.58 -152.41 REMARK 500 HIS A 377 82.11 -156.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2042 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2048 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1423 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE2 REMARK 620 2 HIS A 71 NE2 95.3 REMARK 620 3 GLU A 239 OE2 103.8 102.9 REMARK 620 4 TRS A1429 N 97.2 125.5 124.8 REMARK 620 5 TRS A1429 O3 173.1 84.6 82.9 77.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1424 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 69 O REMARK 620 2 SER A 72 O 95.4 REMARK 620 3 ARG A 352 O 100.5 135.6 REMARK 620 4 ILE A 354 O 106.0 103.2 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1425 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 208 NH1 REMARK 620 2 HIS A 211 ND1 109.7 REMARK 620 3 ASP A 283 OD1 122.7 108.7 REMARK 620 4 GLU A 320 OE2 110.9 97.0 104.7 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IN SWISS-PROT ENTRY P49424 IS INCORRECT REMARK 999 (AS OF THE DATE OF RELEASE OF THIS ENTRY). SEE REMARK 999 J.BIOL.CHEM. (276) 31186, 2001. DBREF 1GVY A 39 363 UNP P49424 P49424 39 363 DBREF 1GVY A 364 421 PDB 1GVY 1GVY 364 421 SEQADV 1GVY ALA A 212 UNP P49424 GLU 212 ENGINEERED MUTATION SEQRES 1 A 383 ARG ALA ASP VAL LYS PRO VAL THR VAL LYS LEU VAL ASP SEQRES 2 A 383 SER GLN ALA THR MET GLU THR ARG SER LEU PHE ALA PHE SEQRES 3 A 383 MET GLN GLU GLN ARG ARG HIS SER ILE MET PHE GLY HIS SEQRES 4 A 383 GLN HIS GLU THR THR GLN GLY LEU THR ILE THR ARG THR SEQRES 5 A 383 ASP GLY THR GLN SER ASP THR PHE ASN ALA VAL GLY ASP SEQRES 6 A 383 PHE ALA ALA VAL TYR GLY TRP ASP THR LEU SER ILE VAL SEQRES 7 A 383 ALA PRO LYS ALA GLU GLY ASP ILE VAL ALA GLN VAL LYS SEQRES 8 A 383 LYS ALA TYR ALA ARG GLY GLY ILE ILE THR VAL SER SER SEQRES 9 A 383 HIS PHE ASP ASN PRO LYS THR ASP THR GLN LYS GLY VAL SEQRES 10 A 383 TRP PRO VAL GLY THR SER TRP ASP GLN THR PRO ALA VAL SEQRES 11 A 383 VAL ASP SER LEU PRO GLY GLY ALA TYR ASN PRO VAL LEU SEQRES 12 A 383 ASN GLY TYR LEU ASP GLN VAL ALA GLU TRP ALA ASN ASN SEQRES 13 A 383 LEU LYS ASP GLU GLN GLY ARG LEU ILE PRO VAL ILE PHE SEQRES 14 A 383 ARG LEU TYR HIS ALA ASN THR GLY SER TRP PHE TRP TRP SEQRES 15 A 383 GLY ASP LYS GLN SER THR PRO GLU GLN TYR LYS GLN LEU SEQRES 16 A 383 PHE ARG TYR SER VAL GLU TYR LEU ARG ASP VAL LYS GLY SEQRES 17 A 383 VAL ARG ASN PHE LEU TYR ALA TYR SER PRO ASN ASN PHE SEQRES 18 A 383 TRP ASP VAL THR GLU ALA ASN TYR LEU GLU ARG TYR PRO SEQRES 19 A 383 GLY ASP GLU TRP VAL ASP VAL LEU GLY PHE ASP THR TYR SEQRES 20 A 383 GLY PRO VAL ALA ASP ASN ALA ASP TRP PHE ARG ASN VAL SEQRES 21 A 383 VAL ALA ASN ALA ALA LEU VAL ALA ARG MET ALA GLU ALA SEQRES 22 A 383 ARG GLY LYS ILE PRO VAL ILE SER GLU ILE GLY ILE ARG SEQRES 23 A 383 ALA PRO ASP ILE GLU ALA GLY LEU TYR ASP ASN GLN TRP SEQRES 24 A 383 TYR ARG LYS LEU ILE SER GLY LEU LYS ALA ASP PRO ASP SEQRES 25 A 383 ALA ARG GLU ILE ALA PHE LEU LEU VAL TRP ARG ASN ALA SEQRES 26 A 383 PRO GLN GLY VAL PRO GLY PRO ASN GLY THR GLN VAL PRO SEQRES 27 A 383 HIS TYR TRP VAL PRO ALA ASN ARG PRO GLU ASN ILE ASN SEQRES 28 A 383 ASN GLY THR LEU GLU ASP PHE GLN ALA PHE TYR ALA ASP SEQRES 29 A 383 GLU PHE THR ALA PHE ASN ARG ASP ILE GLU GLN VAL TYR SEQRES 30 A 383 GLN ARG PRO THR LEU ILE HET MBF B 1 12 HET BMA B 2 11 HET BMA B 3 11 HET NIN A1422 12 HET ZN A1423 1 HET NA A1424 1 HET ZN A1425 1 HET TRS A1429 8 HET TRS A1430 8 HETNAM MBF 2-DEOXY-2-FLUORO-BETA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM NIN DINITROPHENYLENE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN MBF 2-DEOXY-2-FLUORO-BETA-D-MANNOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 MBF MANNOSE; 2-DEOXY-2-FLUORO-MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN TRS TRIS BUFFER FORMUL 2 MBF C6 H11 F O5 FORMUL 2 BMA 2(C6 H12 O6) FORMUL 3 NIN C6 H4 N2 O4 FORMUL 4 ZN 2(ZN 2+) FORMUL 5 NA NA 1+ FORMUL 7 TRS 2(C4 H12 N O3 1+) FORMUL 9 HOH *451(H2 O) HELIX 1 1 THR A 55 ARG A 69 1 15 HELIX 2 2 SER A 95 GLY A 102 1 8 HELIX 3 3 LEU A 113 ILE A 115 5 3 HELIX 4 4 ILE A 124 ARG A 134 1 11 HELIX 5 5 THR A 149 LYS A 153 5 5 HELIX 6 6 TYR A 177 ASN A 194 1 18 HELIX 7 7 THR A 226 ASP A 243 1 18 HELIX 8 8 THR A 263 GLU A 269 1 7 HELIX 9 9 ASN A 291 GLY A 313 1 23 HELIX 10 10 ARG A 324 ALA A 330 1 7 HELIX 11 11 GLN A 336 ASP A 348 1 13 HELIX 12 12 ASP A 350 ILE A 354 5 5 HELIX 13 13 ARG A 384 ASN A 390 1 7 HELIX 14 14 GLY A 391 ASP A 402 1 12 HELIX 15 15 PHE A 407 ILE A 411 5 5 SHEET 1 AA 2 VAL A 45 THR A 46 0 SHEET 2 AA 2 THR A 419 LEU A 420 1 N LEU A 420 O VAL A 45 SHEET 1 AB 8 ILE A 315 PRO A 316 0 SHEET 2 AB 8 VAL A 279 LEU A 280 1 N LEU A 280 O ILE A 315 SHEET 3 AB 8 PHE A 250 TYR A 254 1 N TYR A 254 O VAL A 279 SHEET 4 AB 8 VAL A 205 ARG A 208 1 O VAL A 205 N LEU A 251 SHEET 5 AB 8 ILE A 137 SER A 141 1 O ILE A 138 N ILE A 206 SHEET 6 AB 8 VAL A 107 ASP A 111 1 O TYR A 108 N THR A 139 SHEET 7 AB 8 ILE A 73 GLN A 78 1 O PHE A 75 N VAL A 107 SHEET 8 AB 8 PHE A 356 VAL A 359 1 O LEU A 357 N GLY A 76 SHEET 1 AC 8 ILE A 315 PRO A 316 0 SHEET 2 AC 8 VAL A 279 LEU A 280 1 N LEU A 280 O ILE A 315 SHEET 3 AC 8 PHE A 250 TYR A 254 1 N TYR A 254 O VAL A 279 SHEET 4 AC 8 VAL A 205 ARG A 208 1 O VAL A 205 N LEU A 251 SHEET 5 AC 8 ILE A 137 SER A 141 1 O ILE A 138 N ILE A 206 SHEET 6 AC 8 VAL A 107 ASP A 111 1 O TYR A 108 N THR A 139 SHEET 7 AC 8 ILE A 73 GLN A 78 1 O PHE A 75 N VAL A 107 SHEET 8 AC 8 THR A 405 ALA A 406 1 O ALA A 406 N PHE A 75 SHEET 1 AD 2 PHE A 356 VAL A 359 0 SHEET 2 AD 2 ILE A 73 GLN A 78 1 O MET A 74 N LEU A 357 SHEET 1 AE 2 ASP A 283 GLY A 286 0 SHEET 2 AE 2 GLU A 320 ILE A 323 1 O GLU A 320 N THR A 284 SHEET 1 AF 2 VAL A 367 PRO A 368 0 SHEET 2 AF 2 GLN A 374 VAL A 375 -1 O VAL A 375 N VAL A 367 LINK C1 NIN A1422 O1 MBF B 1 1555 1555 1.37 LINK O4 MBF B 1 C1 BMA B 2 1555 1555 1.40 LINK O4 BMA B 2 C1 BMA B 3 1555 1555 1.41 LINK OE2 GLU A 67 ZN ZN A1423 1555 1555 2.03 LINK O ARG A 69 NA NA A1424 1555 1555 2.23 LINK NE2 HIS A 71 ZN ZN A1423 1555 1555 1.99 LINK O SER A 72 NA NA A1424 1555 1555 2.29 LINK NH1 ARG A 208 ZN ZN A1425 1555 1555 1.98 LINK ND1 HIS A 211 ZN ZN A1425 1555 1555 2.01 LINK OE2 GLU A 239 ZN ZN A1423 4564 1555 1.99 LINK OD1 ASP A 283 ZN ZN A1425 1555 1555 1.96 LINK OE2 GLU A 320 ZN ZN A1425 1555 1555 1.96 LINK O ARG A 352 NA NA A1424 1555 1555 2.27 LINK O ILE A 354 NA NA A1424 1555 1555 2.28 LINK ZN ZN A1423 N TRS A1429 1555 1555 1.95 LINK ZN ZN A1423 O3 TRS A1429 1555 1555 2.45 CISPEP 1 ALA A 117 PRO A 118 0 7.12 CISPEP 2 TRP A 156 PRO A 157 0 3.84 CRYST1 93.192 93.192 54.343 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018402 0.00000