HEADER HYDROLASE 01-MAR-02 1GW1 TITLE SUBSTRATE DISTORTION BY BETA-MANNANASE FROM PSEUDOMONAS CELLULOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN ENDO-1,4-BETA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-MANNANASE, MANNANASE A; COMPND 5 EC: 3.2.1.78; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: COMPLEX WITH 2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA- COMPND 9 MANNOTRIOSIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS CELLULOSA; SOURCE 3 ORGANISM_TAXID: 155077; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE, GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR V.DUCROS,D.L.ZECHEL,H.J.GILBERT,L.SZABO,S.G.WITHERS,G.J.DAVIES REVDAT 7 06-NOV-24 1GW1 1 REMARK REVDAT 6 13-DEC-23 1GW1 1 HETSYN REVDAT 5 29-JUL-20 1GW1 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 28-NOV-12 1GW1 1 SOURCE REMARK VERSN SEQADV REVDAT 3 15-DEC-10 1GW1 1 VERSN REVDAT 2 24-FEB-09 1GW1 1 VERSN REVDAT 1 05-SEP-02 1GW1 0 JRNL AUTH V.DUCROS,D.L.ZECHEL,G.MURSHUDOV,H.J.GILBERT,L.SZABO,D.STOLL, JRNL AUTH 2 S.G.WITHERS,G.J.DAVIES JRNL TITL SUBSTRATE DISTORTION BY A BETA-MANNANASE: SNAPSHOTS OF THE JRNL TITL 2 MICHAELIS AND COVALENT-INTERMEDIATE COMPLEXES SUGGEST A B2,5 JRNL TITL 3 CONFORMATION FOR THE TRANSITION STATE JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 41 2824 2002 JRNL REFN ISSN 1433-7851 JRNL PMID 12203498 JRNL DOI 10.1002/1521-3773(20020802)41:15<2824::AID-ANIE2824>3.0.CO;2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.HOGG,E.-J.WOO,D.N.BOLAM,V.A.MCKIE,H.J.GILBERT, REMARK 1 AUTH 2 R.W.PICKERSGILL REMARK 1 TITL CRYSTAL STRUCTURE OF MANNANASE 26A FROM PSEUDOMONAS REMARK 1 TITL 2 CELLULOSA AND ANALYSIS OF RESIDUES INVOLVED IN SUBSTRATE REMARK 1 TITL 3 BINDING REMARK 1 REF J.BIOL.CHEM. V. 276 31186 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11382747 REMARK 1 DOI 10.1074/JBC.M010290200 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 51895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2778 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1230 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.1810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3009 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.263 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3207 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2735 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4385 ; 1.347 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6350 ; 0.857 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 5.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3550 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 682 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 632 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3220 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1688 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.150 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 2.082 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3038 ; 2.974 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 2.470 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1346 ; 3.669 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3207 ; 1.385 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 382 ; 2.947 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3114 ; 2.538 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1GW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1290009461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54188 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1J9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS 7.5, 9MM ZNSO4, 26% PEG550, REMARK 280 PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.85950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.42975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.28925 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 212 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2109 O HOH A 2111 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 320 CD GLU A 320 OE2 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 410 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 115 -50.41 -126.40 REMARK 500 HIS A 143 68.07 -105.37 REMARK 500 HIS A 377 84.88 -157.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2052 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1422 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE2 REMARK 620 2 HIS A 71 NE2 94.9 REMARK 620 3 GLU A 239 OE1 106.8 103.7 REMARK 620 4 TRS A1430 O2 167.3 87.8 84.5 REMARK 620 5 TRS A1430 N 96.2 126.1 122.7 72.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1423 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 69 O REMARK 620 2 SER A 72 O 92.9 REMARK 620 3 ARG A 352 O 102.2 134.3 REMARK 620 4 ILE A 354 O 107.9 103.9 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1424 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 208 NH1 REMARK 620 2 ASP A 283 OD2 117.7 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GVY RELATED DB: PDB REMARK 900 SUBSTRATE DISTORSION BY BETA-MANNANASE FROM PSEUDOMONAS CELLULOSA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SWISS-PROT ACCESSION NUMBER IS OF THE NATIVE, REMARK 999 THE SEQUENCE OF THE STRUCTURE DEPOSITED IS OF REMARK 999 A MUTANT E212A REMARK 999 BREAK IN CHAIN A: RESIDUES 370 AND 371 NOT BUILT REMARK 999 DUE TO DISORDER IN THE DENSITY DBREF 1GW1 A 43 421 UNP P49424 MANA_CELJU 43 421 SEQADV 1GW1 ALA A 212 UNP P49424 GLU 212 ENGINEERED MUTATION SEQADV 1GW1 A UNP P49424 PRO 370 DELETION SEQADV 1GW1 A UNP P49424 ASN 371 DELETION SEQADV 1GW1 A UNP P49424 GLY 372 DELETION SEQRES 1 A 376 LYS PRO VAL THR VAL LYS LEU VAL ASP SER GLN ALA THR SEQRES 2 A 376 MET GLU THR ARG SER LEU PHE ALA PHE MET GLN GLU GLN SEQRES 3 A 376 ARG ARG HIS SER ILE MET PHE GLY HIS GLN HIS GLU THR SEQRES 4 A 376 THR GLN GLY LEU THR ILE THR ARG THR ASP GLY THR GLN SEQRES 5 A 376 SER ASP THR PHE ASN ALA VAL GLY ASP PHE ALA ALA VAL SEQRES 6 A 376 TYR GLY TRP ASP THR LEU SER ILE VAL ALA PRO LYS ALA SEQRES 7 A 376 GLU GLY ASP ILE VAL ALA GLN VAL LYS LYS ALA TYR ALA SEQRES 8 A 376 ARG GLY GLY ILE ILE THR VAL SER SER HIS PHE ASP ASN SEQRES 9 A 376 PRO LYS THR ASP THR GLN LYS GLY VAL TRP PRO VAL GLY SEQRES 10 A 376 THR SER TRP ASP GLN THR PRO ALA VAL VAL ASP SER LEU SEQRES 11 A 376 PRO GLY GLY ALA TYR ASN PRO VAL LEU ASN GLY TYR LEU SEQRES 12 A 376 ASP GLN VAL ALA GLU TRP ALA ASN ASN LEU LYS ASP GLU SEQRES 13 A 376 GLN GLY ARG LEU ILE PRO VAL ILE PHE ARG LEU TYR HIS SEQRES 14 A 376 ALA ASN THR GLY SER TRP PHE TRP TRP GLY ASP LYS GLN SEQRES 15 A 376 SER THR PRO GLU GLN TYR LYS GLN LEU PHE ARG TYR SER SEQRES 16 A 376 VAL GLU TYR LEU ARG ASP VAL LYS GLY VAL ARG ASN PHE SEQRES 17 A 376 LEU TYR ALA TYR SER PRO ASN ASN PHE TRP ASP VAL THR SEQRES 18 A 376 GLU ALA ASN TYR LEU GLU ARG TYR PRO GLY ASP GLU TRP SEQRES 19 A 376 VAL ASP VAL LEU GLY PHE ASP THR TYR GLY PRO VAL ALA SEQRES 20 A 376 ASP ASN ALA ASP TRP PHE ARG ASN VAL VAL ALA ASN ALA SEQRES 21 A 376 ALA LEU VAL ALA ARG MET ALA GLU ALA ARG GLY LYS ILE SEQRES 22 A 376 PRO VAL ILE SER GLU ILE GLY ILE ARG ALA PRO ASP ILE SEQRES 23 A 376 GLU ALA GLY LEU TYR ASP ASN GLN TRP TYR ARG LYS LEU SEQRES 24 A 376 ILE SER GLY LEU LYS ALA ASP PRO ASP ALA ARG GLU ILE SEQRES 25 A 376 ALA PHE LEU LEU VAL TRP ARG ASN ALA PRO GLN GLY VAL SEQRES 26 A 376 PRO GLY THR GLN VAL PRO HIS TYR TRP VAL PRO ALA ASN SEQRES 27 A 376 ARG PRO GLU ASN ILE ASN ASN GLY THR LEU GLU ASP PHE SEQRES 28 A 376 GLN ALA PHE TYR ALA ASP GLU PHE THR ALA PHE ASN ARG SEQRES 29 A 376 ASP ILE GLU GLN VAL TYR GLN ARG PRO THR LEU ILE HET MAF B 1 11 HET MBF B 1 12 HET BMA B 2 22 HET BMA B 3 11 HET ZN A1422 1 HET NA A1423 1 HET ZN A1424 1 HET NIN A1429 12 HET TRS A1430 8 HET TRS A1431 8 HETNAM MAF 2-DEOXY-2-FLUORO-ALPHA-D-MANNOPYRANOSE HETNAM MBF 2-DEOXY-2-FLUORO-BETA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM NIN DINITROPHENYLENE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN MAF 2-DEOXY-2-FLUORO-ALPHA-D-MANNOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 MAF MANNOSE; 2-DEOXY-2-FLUORO-MANNOSE HETSYN MBF 2-DEOXY-2-FLUORO-BETA-D-MANNOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 MBF MANNOSE; 2-DEOXY-2-FLUORO-MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN TRS TRIS BUFFER FORMUL 2 MAF C6 H11 F O5 FORMUL 2 MBF C6 H11 F O5 FORMUL 2 BMA 2(C6 H12 O6) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 NA NA 1+ FORMUL 6 NIN C6 H4 N2 O4 FORMUL 7 TRS 2(C4 H12 N O3 1+) FORMUL 9 HOH *379(H2 O) HELIX 1 1 THR A 55 ARG A 69 1 15 HELIX 2 2 SER A 95 GLY A 102 1 8 HELIX 3 3 LEU A 113 ILE A 115 5 3 HELIX 4 4 ILE A 124 ARG A 134 1 11 HELIX 5 5 THR A 149 LYS A 153 5 5 HELIX 6 6 TYR A 177 ASN A 194 1 18 HELIX 7 7 THR A 226 VAL A 244 1 19 HELIX 8 8 THR A 263 GLU A 269 1 7 HELIX 9 9 ASN A 291 GLY A 313 1 23 HELIX 10 10 ARG A 324 ALA A 330 1 7 HELIX 11 11 GLN A 336 ASP A 348 1 13 HELIX 12 12 ASP A 350 ILE A 354 5 5 HELIX 13 13 ARG A 384 ASN A 390 1 7 HELIX 14 14 GLY A 391 ASP A 402 1 12 HELIX 15 15 PHE A 407 ILE A 411 5 5 SHEET 1 AA 2 VAL A 45 THR A 46 0 SHEET 2 AA 2 THR A 419 LEU A 420 1 N LEU A 420 O VAL A 45 SHEET 1 AB 8 ILE A 315 PRO A 316 0 SHEET 2 AB 8 VAL A 279 LEU A 280 1 N LEU A 280 O ILE A 315 SHEET 3 AB 8 PHE A 250 TYR A 254 1 N TYR A 254 O VAL A 279 SHEET 4 AB 8 VAL A 205 ARG A 208 1 O VAL A 205 N LEU A 251 SHEET 5 AB 8 ILE A 137 SER A 141 1 O ILE A 138 N ILE A 206 SHEET 6 AB 8 VAL A 107 ASP A 111 1 O TYR A 108 N THR A 139 SHEET 7 AB 8 ILE A 73 GLN A 78 1 O PHE A 75 N VAL A 107 SHEET 8 AB 8 THR A 405 ALA A 406 1 O ALA A 406 N PHE A 75 SHEET 1 AC 8 ILE A 315 PRO A 316 0 SHEET 2 AC 8 VAL A 279 LEU A 280 1 N LEU A 280 O ILE A 315 SHEET 3 AC 8 PHE A 250 TYR A 254 1 N TYR A 254 O VAL A 279 SHEET 4 AC 8 VAL A 205 ARG A 208 1 O VAL A 205 N LEU A 251 SHEET 5 AC 8 ILE A 137 SER A 141 1 O ILE A 138 N ILE A 206 SHEET 6 AC 8 VAL A 107 ASP A 111 1 O TYR A 108 N THR A 139 SHEET 7 AC 8 ILE A 73 GLN A 78 1 O PHE A 75 N VAL A 107 SHEET 8 AC 8 PHE A 356 VAL A 359 1 O LEU A 357 N GLY A 76 SHEET 1 AD 2 ASP A 283 GLY A 286 0 SHEET 2 AD 2 GLU A 320 ILE A 323 1 O GLU A 320 N THR A 284 LINK OE2AGLU A 320 C1 AMAF B 1 1555 1555 1.44 LINK O4 BMBF B 1 C1 BBMA B 2 1555 1555 1.42 LINK O4 AMAF B 1 C1 ABMA B 2 1555 1555 1.43 LINK O4 BBMA B 2 C1 BMA B 3 1555 1555 1.41 LINK O4 ABMA B 2 C1 BMA B 3 1555 1555 1.43 LINK OE2 GLU A 67 ZN ZN A1422 1555 1555 2.03 LINK O ARG A 69 NA NA A1423 1555 1555 2.24 LINK NE2 HIS A 71 ZN ZN A1422 1555 1555 2.01 LINK O SER A 72 NA NA A1423 1555 1555 2.31 LINK NH1 ARG A 208 ZN ZN A1424 1555 1555 1.79 LINK OE1 GLU A 239 ZN ZN A1422 3645 1555 1.97 LINK OD2 ASP A 283 ZN ZN A1424 1555 1555 1.93 LINK O ARG A 352 NA NA A1423 1555 1555 2.27 LINK O ILE A 354 NA NA A1423 1555 1555 2.27 LINK ZN ZN A1422 O2 TRS A1430 1555 1555 2.48 LINK ZN ZN A1422 N TRS A1430 1555 1555 1.94 CISPEP 1 ALA A 117 PRO A 118 0 9.73 CISPEP 2 TRP A 156 PRO A 157 0 6.80 CRYST1 93.488 93.488 53.719 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018615 0.00000