HEADER GTPASE 19-MAR-02 1GWN TITLE THE CRYSTAL STRUCTURE OF THE CORE DOMAIN OF RHOE/RND3 - A TITLE 2 CONSTITUTIVELY ACTIVATED SMALL G PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHOE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CORE DOMAIN, RESIDUES 16-200; COMPND 5 SYNONYM: RHO FAMILY GTPASE 3,RND3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RND3, ARHE, RHOE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GTPASE, INACTIVE GTPASE, SIGNAL TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.GARAVINI,K.RIENTO,J.P.PHELAN,M.S.B.MCALISTER,A.J.RIDLEY,N.H.KEEP REVDAT 6 13-DEC-23 1GWN 1 LINK REVDAT 5 20-JUN-18 1GWN 1 COMPND SOURCE AUTHOR JRNL REVDAT 5 2 1 DBREF SEQADV REVDAT 4 13-JUL-11 1GWN 1 VERSN REVDAT 3 24-FEB-09 1GWN 1 VERSN REVDAT 2 23-MAY-02 1GWN 1 JRNL REVDAT 1 05-APR-02 1GWN 0 JRNL AUTH H.GARAVINI,K.RIENTO,J.P.PHELAN,M.S.B.MCALISTER,A.J.RIDLEY, JRNL AUTH 2 N.H.KEEP JRNL TITL CRYSTAL STRUCTURE OF THE CORE DOMAIN OF RHOE/RND3: A JRNL TITL 2 CONSTITUTIVELY ACTIVATED SMALL G PROTEIN JRNL REF BIOCHEMISTRY V. 41 6303 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12009891 JRNL DOI 10.1021/BI025651H REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2933 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2536 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 4013 ; 1.928 ; 1.980 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 5941 ; 0.906 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3219 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 557 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 728 ; 0.241 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2622 ; 0.212 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 239 ; 0.224 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.377 ; 0.000 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.062 ; 0.000 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.240 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.162 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.275 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1799 ; 0.965 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2935 ; 1.793 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1134 ; 2.911 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 4.666 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5720 47.1400 51.5170 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.0063 REMARK 3 T33: 0.1977 T12: -0.0155 REMARK 3 T13: 0.0220 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.2102 L22: 3.3254 REMARK 3 L33: 2.4926 L12: -0.1609 REMARK 3 L13: -0.1979 L23: 1.0467 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: -0.0587 S13: -0.0135 REMARK 3 S21: 0.3019 S22: 0.0799 S23: 0.0736 REMARK 3 S31: 0.1908 S32: -0.0300 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 23 C 200 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7050 22.8390 30.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.0199 REMARK 3 T33: 0.2114 T12: -0.0028 REMARK 3 T13: -0.0053 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.3152 L22: 2.2910 REMARK 3 L33: 2.3641 L12: -0.1446 REMARK 3 L13: 0.1528 L23: 0.4077 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.1628 S13: -0.0211 REMARK 3 S21: -0.1148 S22: 0.0313 S23: -0.0077 REMARK 3 S31: 0.0023 S32: -0.1093 S33: -0.0079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE ELECTRON DENSITY IN THE REGION OF RESIDUE 23 IS REMARK 3 AMBIGUOUS AND THE CIS-CONFORMATION OF LYS23 MAY BE DUE TO THE REMARK 3 POOR DEFINITION OF THE ENCLOSING DENSITY. REMARK 4 REMARK 4 1GWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1290009582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25276 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 18.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1CXZ CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 10% PROPAN-2-OL, REMARK 280 20% PEG 4000, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.51200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.72700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.72700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.76800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.72700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.72700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.25600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.72700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.72700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 174.76800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.72700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.72700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.25600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.51200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 MET A 16 REMARK 465 ASP A 17 REMARK 465 PRO A 18 REMARK 465 ASN A 19 REMARK 465 GLN A 20 REMARK 465 ASN A 21 REMARK 465 MET C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 HIS C 1 REMARK 465 HIS C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 SER C 6 REMARK 465 SER C 7 REMARK 465 GLY C 8 REMARK 465 LEU C 9 REMARK 465 VAL C 10 REMARK 465 PRO C 11 REMARK 465 ARG C 12 REMARK 465 GLY C 13 REMARK 465 SER C 14 REMARK 465 HIS C 15 REMARK 465 MET C 16 REMARK 465 ASP C 17 REMARK 465 PRO C 18 REMARK 465 ASN C 19 REMARK 465 GLN C 20 REMARK 465 ASN C 21 REMARK 465 VAL C 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 THR A 68 OG1 CG2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 ILE C 66 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2025 O HOH A 2067 1.87 REMARK 500 N ASP C 67 OE1 GLN C 69 1.94 REMARK 500 OD1 ASP C 111 O HOH C 2054 1.95 REMARK 500 O CYS A 125 O HOH A 2042 1.99 REMARK 500 NZ LYS A 167 O LYS C 200 2.06 REMARK 500 O ASP A 85 O HOH A 2027 2.09 REMARK 500 O HOH C 2013 O HOH C 2030 2.09 REMARK 500 O ASP C 67 NE2 GLN C 69 2.15 REMARK 500 O HOH A 2051 O HOH A 2056 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2065 O HOH C 2082 6475 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 138 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG C 88 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG C 88 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP C 94 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 96 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP C 111 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 56 -62.60 -103.92 REMARK 500 ASP A 67 -78.07 65.83 REMARK 500 THR A 68 -95.51 -130.23 REMARK 500 GLN A 69 124.61 1.47 REMARK 500 LYS A 116 -57.53 -127.48 REMARK 500 PHE C 64 -154.84 -126.57 REMARK 500 ILE C 66 -74.28 -85.46 REMARK 500 LYS C 116 -54.48 -142.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2025 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 37 OG1 REMARK 620 2 THR A 55 OG1 76.2 REMARK 620 3 GTP A1201 O2B 92.7 168.8 REMARK 620 4 GTP A1201 O2G 167.1 91.1 100.0 REMARK 620 5 HOH A2020 O 92.3 90.6 91.2 89.6 REMARK 620 6 HOH A2084 O 88.2 88.8 89.5 89.7 179.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 37 OG1 REMARK 620 2 THR C 55 OG1 82.8 REMARK 620 3 GTP C1201 O2G 169.4 86.9 REMARK 620 4 GTP C1201 O2B 93.1 175.5 97.1 REMARK 620 5 HOH C2029 O 83.9 87.6 93.1 90.2 REMARK 620 6 HOH C2105 O 91.1 91.9 91.8 90.0 175.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP C1201 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-15 AND 201 ONWARDS HAVE BEEN DELETED. THE N-TERMINUS REMARK 999 INCLUDES AN UNCLEAVED HIS-TAG. DBREF 1GWN A 16 200 UNP P61588 RND3_MOUSE 16 200 DBREF 1GWN C 16 200 UNP P61588 RND3_MOUSE 16 200 SEQADV 1GWN MET A -4 UNP P61588 INITIATING METHIONINE SEQADV 1GWN GLY A -3 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER A -2 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER A -1 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS A 0 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS A 1 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS A 2 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS A 3 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS A 4 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS A 5 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER A 6 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER A 7 UNP P61588 EXPRESSION TAG SEQADV 1GWN GLY A 8 UNP P61588 EXPRESSION TAG SEQADV 1GWN LEU A 9 UNP P61588 EXPRESSION TAG SEQADV 1GWN VAL A 10 UNP P61588 EXPRESSION TAG SEQADV 1GWN PRO A 11 UNP P61588 EXPRESSION TAG SEQADV 1GWN ARG A 12 UNP P61588 EXPRESSION TAG SEQADV 1GWN GLY A 13 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER A 14 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS A 15 UNP P61588 EXPRESSION TAG SEQADV 1GWN MET C -4 UNP P61588 INITIATING METHIONINE SEQADV 1GWN GLY C -3 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER C -2 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER C -1 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS C 0 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS C 1 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS C 2 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS C 3 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS C 4 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS C 5 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER C 6 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER C 7 UNP P61588 EXPRESSION TAG SEQADV 1GWN GLY C 8 UNP P61588 EXPRESSION TAG SEQADV 1GWN LEU C 9 UNP P61588 EXPRESSION TAG SEQADV 1GWN VAL C 10 UNP P61588 EXPRESSION TAG SEQADV 1GWN PRO C 11 UNP P61588 EXPRESSION TAG SEQADV 1GWN ARG C 12 UNP P61588 EXPRESSION TAG SEQADV 1GWN GLY C 13 UNP P61588 EXPRESSION TAG SEQADV 1GWN SER C 14 UNP P61588 EXPRESSION TAG SEQADV 1GWN HIS C 15 UNP P61588 EXPRESSION TAG SEQRES 1 A 205 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 205 LEU VAL PRO ARG GLY SER HIS MET ASP PRO ASN GLN ASN SEQRES 3 A 205 VAL LYS CYS LYS ILE VAL VAL VAL GLY ASP SER GLN CYS SEQRES 4 A 205 GLY LYS THR ALA LEU LEU HIS VAL PHE ALA LYS ASP CYS SEQRES 5 A 205 PHE PRO GLU ASN TYR VAL PRO THR VAL PHE GLU ASN TYR SEQRES 6 A 205 THR ALA SER PHE GLU ILE ASP THR GLN ARG ILE GLU LEU SEQRES 7 A 205 SER LEU TRP ASP THR SER GLY SER PRO TYR TYR ASP ASN SEQRES 8 A 205 VAL ARG PRO LEU SER TYR PRO ASP SER ASP ALA VAL LEU SEQRES 9 A 205 ILE CYS PHE ASP ILE SER ARG PRO GLU THR LEU ASP SER SEQRES 10 A 205 VAL LEU LYS LYS TRP LYS GLY GLU ILE GLN GLU PHE CYS SEQRES 11 A 205 PRO ASN THR LYS MET LEU LEU VAL GLY CYS LYS SER ASP SEQRES 12 A 205 LEU ARG THR ASP VAL SER THR LEU VAL GLU LEU SER ASN SEQRES 13 A 205 HIS ARG GLN THR PRO VAL SER TYR ASP GLN GLY ALA ASN SEQRES 14 A 205 MET ALA LYS GLN ILE GLY ALA ALA THR TYR ILE GLU CYS SEQRES 15 A 205 SER ALA LEU GLN SER GLU ASN SER VAL ARG ASP ILE PHE SEQRES 16 A 205 HIS VAL ALA THR LEU ALA CYS VAL ASN LYS SEQRES 1 C 205 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 205 LEU VAL PRO ARG GLY SER HIS MET ASP PRO ASN GLN ASN SEQRES 3 C 205 VAL LYS CYS LYS ILE VAL VAL VAL GLY ASP SER GLN CYS SEQRES 4 C 205 GLY LYS THR ALA LEU LEU HIS VAL PHE ALA LYS ASP CYS SEQRES 5 C 205 PHE PRO GLU ASN TYR VAL PRO THR VAL PHE GLU ASN TYR SEQRES 6 C 205 THR ALA SER PHE GLU ILE ASP THR GLN ARG ILE GLU LEU SEQRES 7 C 205 SER LEU TRP ASP THR SER GLY SER PRO TYR TYR ASP ASN SEQRES 8 C 205 VAL ARG PRO LEU SER TYR PRO ASP SER ASP ALA VAL LEU SEQRES 9 C 205 ILE CYS PHE ASP ILE SER ARG PRO GLU THR LEU ASP SER SEQRES 10 C 205 VAL LEU LYS LYS TRP LYS GLY GLU ILE GLN GLU PHE CYS SEQRES 11 C 205 PRO ASN THR LYS MET LEU LEU VAL GLY CYS LYS SER ASP SEQRES 12 C 205 LEU ARG THR ASP VAL SER THR LEU VAL GLU LEU SER ASN SEQRES 13 C 205 HIS ARG GLN THR PRO VAL SER TYR ASP GLN GLY ALA ASN SEQRES 14 C 205 MET ALA LYS GLN ILE GLY ALA ALA THR TYR ILE GLU CYS SEQRES 15 C 205 SER ALA LEU GLN SER GLU ASN SER VAL ARG ASP ILE PHE SEQRES 16 C 205 HIS VAL ALA THR LEU ALA CYS VAL ASN LYS HET GTP A1201 32 HET MG A1202 1 HET GTP C1201 32 HET MG C1202 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *197(H2 O) HELIX 1 1 GLY A 35 ASP A 46 1 12 HELIX 2 2 SER A 81 ASP A 85 5 5 HELIX 3 3 VAL A 87 TYR A 92 5 6 HELIX 4 4 ARG A 106 LYS A 116 1 11 HELIX 5 5 LYS A 116 CYS A 125 1 10 HELIX 6 6 LYS A 136 THR A 141 5 6 HELIX 7 7 ASP A 142 ASN A 151 1 10 HELIX 8 8 SER A 158 GLY A 170 1 13 HELIX 9 9 SER A 182 LYS A 200 1 19 HELIX 10 10 GLY C 35 ASP C 46 1 12 HELIX 11 11 SER C 81 ASP C 85 5 5 HELIX 12 12 VAL C 87 TYR C 92 5 6 HELIX 13 13 ARG C 106 LYS C 116 1 11 HELIX 14 14 LYS C 116 CYS C 125 1 10 HELIX 15 15 LYS C 136 THR C 141 5 6 HELIX 16 16 ASP C 142 ASN C 151 1 10 HELIX 17 17 SER C 158 GLY C 170 1 13 HELIX 18 18 SER C 182 LYS C 200 1 19 SHEET 1 AA 6 PHE A 57 GLU A 65 0 SHEET 2 AA 6 ARG A 70 THR A 78 -1 O ILE A 71 N PHE A 64 SHEET 3 AA 6 LYS A 23 GLY A 30 1 O CYS A 24 N SER A 74 SHEET 4 AA 6 ALA A 97 ASP A 103 1 O ALA A 97 N VAL A 27 SHEET 5 AA 6 LYS A 129 CYS A 135 1 O LYS A 129 N VAL A 98 SHEET 6 AA 6 THR A 173 GLU A 176 1 O THR A 173 N LEU A 132 SHEET 1 CA 6 PHE C 57 GLU C 65 0 SHEET 2 CA 6 ARG C 70 THR C 78 -1 O ILE C 71 N PHE C 64 SHEET 3 CA 6 LYS C 25 GLY C 30 1 O ILE C 26 N TRP C 76 SHEET 4 CA 6 ALA C 97 ASP C 103 1 O ALA C 97 N VAL C 27 SHEET 5 CA 6 LYS C 129 CYS C 135 1 O LYS C 129 N VAL C 98 SHEET 6 CA 6 THR C 173 GLU C 176 1 O THR C 173 N LEU C 132 SSBOND 1 CYS A 24 CYS A 197 1555 1555 2.05 SSBOND 2 CYS C 24 CYS C 197 1555 1555 2.10 LINK OG1 THR A 37 MG MG A1202 1555 1555 2.12 LINK OG1 THR A 55 MG MG A1202 1555 1555 2.31 LINK O2B GTP A1201 MG MG A1202 1555 1555 2.03 LINK O2G GTP A1201 MG MG A1202 1555 1555 2.16 LINK MG MG A1202 O HOH A2020 1555 1555 2.15 LINK MG MG A1202 O HOH A2084 1555 1555 2.14 LINK OG1 THR C 37 MG MG C1202 1555 1555 2.10 LINK OG1 THR C 55 MG MG C1202 1555 1555 2.08 LINK O2G GTP C1201 MG MG C1202 1555 1555 2.00 LINK O2B GTP C1201 MG MG C1202 1555 1555 1.93 LINK MG MG C1202 O HOH C2029 1555 1555 2.14 LINK MG MG C1202 O HOH C2105 1555 1555 2.17 SITE 1 AC1 5 THR A 37 THR A 55 GTP A1201 HOH A2020 SITE 2 AC1 5 HOH A2084 SITE 1 AC2 5 THR C 37 THR C 55 GTP C1201 HOH C2029 SITE 2 AC2 5 HOH C2105 SITE 1 AC3 23 SER A 32 GLN A 33 CYS A 34 GLY A 35 SITE 2 AC3 23 LYS A 36 THR A 37 ALA A 38 PHE A 48 SITE 3 AC3 23 TYR A 52 THR A 55 GLY A 80 LYS A 136 SITE 4 AC3 23 ASP A 138 LEU A 139 SER A 178 ALA A 179 SITE 5 AC3 23 LEU A 180 MG A1202 HOH A2008 HOH A2020 SITE 6 AC3 23 HOH A2081 HOH A2082 HOH A2084 SITE 1 AC4 26 SER C 32 GLN C 33 CYS C 34 GLY C 35 SITE 2 AC4 26 LYS C 36 THR C 37 ALA C 38 PHE C 48 SITE 3 AC4 26 TYR C 52 THR C 55 GLY C 80 LYS C 136 SITE 4 AC4 26 ASP C 138 LEU C 139 SER C 178 ALA C 179 SITE 5 AC4 26 LEU C 180 MG C1202 HOH C2029 HOH C2105 SITE 6 AC4 26 HOH C2106 HOH C2107 HOH C2108 HOH C2109 SITE 7 AC4 26 HOH C2111 HOH C2112 CRYST1 59.454 59.454 233.024 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004291 0.00000 MTRIX1 1 0.978372 -0.026484 0.205153 -6.93800 1 MTRIX2 1 -0.011440 -0.999393 -0.027627 113.01130 1 MTRIX3 1 0.205760 0.022671 -0.978339 72.54540 1