HEADER TRANSFERASE 27-MAR-02 1GX6 TITLE HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH UTP AND MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 2420-2950; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE BK); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11105; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7.7 KEYWDS POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, VIRUS REPLICATION, KEYWDS 2 INITIATION, POLYPROTEIN, GLYCOPROTEIN, TRANSFERASE, RNA-DIRECTED RNA KEYWDS 3 POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BRESSANELLI,F.A.REY REVDAT 4 13-DEC-23 1GX6 1 REMARK LINK REVDAT 3 28-OCT-15 1GX6 1 HEADER SOURCE KEYWDS REMARK REVDAT 3 2 1 VERSN FORMUL REVDAT 2 24-FEB-09 1GX6 1 VERSN REVDAT 1 10-APR-02 1GX6 0 JRNL AUTH S.BRESSANELLI,L.TOMEI,F.A.REY,R.DE FRANCESCO JRNL TITL A STRUCTURAL ANALYSIS OF THE HEPATITIS C VIRUS RNA JRNL TITL 2 POLYMERASE IN COMPLEX WITH RIBONUCLEOTIDES JRNL REF J.VIROL. V. 76 3482 2002 JRNL REFN ISSN 0022-538X JRNL PMID 11884572 JRNL DOI 10.1128/JVI.76.7.3482-3492.2002 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1900318.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 53836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2898 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2501 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 115 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.91000 REMARK 3 B22 (A**2) : -5.05000 REMARK 3 B33 (A**2) : -4.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.820 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.720 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.770 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 48.21 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : UTP7_0.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : UTP7.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED 5 C-TERMINAL REMARK 3 RESIDUES DISORDERED AND NOT INCLUDED IN MODEL REMARK 4 REMARK 4 1GX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1290009616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% (W/V) PEG 4000, 0.1 M SODIUM REMARK 280 CITRATE, 7% 2-PROPANOL, PH 6.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.54600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.31600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.54600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.31600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL OLIGOMERIZATION STATE OF THE REMARK 300 PROTEIN IS NOT KNOWN.THE PARTICULAR CRYSTAL REMARK 300 CONTACT OBSERVED IN THIS CRYSTAL IS NOTOBSERVED IN REMARK 300 OTHER CRYSTAL FORMS OF THE PROTEIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.09200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.63200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 131 -40.14 -130.92 REMARK 500 LYS A 151 -142.22 -176.51 REMARK 500 THR A 181 -36.60 -130.00 REMARK 500 LEU A 260 -56.26 -132.63 REMARK 500 SER A 347 2.06 96.74 REMARK 500 ALA A 348 75.19 -113.90 REMARK 500 ASN A 406 66.50 -112.31 REMARK 500 ILE A 424 -62.83 -99.63 REMARK 500 VAL A 530 171.66 -53.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2022 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A2023 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A2073 DISTANCE = 5.83 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UTP A 1003 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A3001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 THR A 221 O 83.3 REMARK 620 3 ASP A 318 OD2 89.7 95.0 REMARK 620 4 UTP A1001 O1B 100.3 174.1 89.6 REMARK 620 5 UTP A1001 O3G 170.2 89.4 97.5 86.4 REMARK 620 6 HOH A2484 O 85.1 87.9 173.7 87.8 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A3002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD2 REMARK 620 2 ASP A 318 OD1 99.8 REMARK 620 3 ASP A 319 OD1 100.6 86.6 REMARK 620 4 UTP A1001 O2A 170.2 90.0 79.5 REMARK 620 5 UTP A1001 O1B 95.0 89.3 164.3 85.3 REMARK 620 6 HOH A2485 O 80.0 179.5 93.8 90.2 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A3003 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UTP A1001 O1A REMARK 620 2 UTP A1002 O1B 158.1 REMARK 620 3 UTP A1002 O5' 121.2 76.0 REMARK 620 4 HOH A2394 O 74.9 87.4 163.4 REMARK 620 5 MN A3004 MN 109.6 59.4 73.5 98.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A3005 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UTP A1001 O2B REMARK 620 2 UTP A1003 O1B 118.2 REMARK 620 3 UTP A1003 O2A 135.7 102.3 REMARK 620 4 UTP A1003 O1G 118.4 98.4 68.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C2P RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS5B RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID REMARK 900 POLYMERASE REMARK 900 RELATED ID: 1CSJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC REMARK 900 ACID POLYMERASE OF HEPATITIS C VIRUS REMARK 900 RELATED ID: 1CU1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS REMARK 900 RELATED ID: 1GX5 RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH GTP AND MANGANESE REMARK 900 RELATED ID: 1NS3 RELATED DB: PDB REMARK 900 STRUCTURE OF HCV PROTEASE (BK STRAIN) REMARK 900 RELATED ID: 1QUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID DIRECTED RIBONUCLEIC ACID REMARK 900 POLYMERASE OF HEPATITIS C VIRUS REMARK 900 RELATED ID: 8OHM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBONUCLEIC ACID HELICASE FROM GENOTYPE 1B REMARK 900 HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RIBONUCLEIC ACID DBREF 1GX6 A 1 531 UNP P26663 POLG_HCVBK 2420 2950 SEQRES 1 A 531 SER MSE SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 531 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN ALA LEU SEQRES 3 A 531 SER ASN SER LEU LEU ARG HIS HIS ASN MSE VAL TYR ALA SEQRES 4 A 531 THR THR SER ARG SER ALA GLY LEU ARG GLN LYS LYS VAL SEQRES 5 A 531 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 531 ASP VAL LEU LYS GLU MSE LYS ALA LYS ALA SER THR VAL SEQRES 7 A 531 LYS ALA LYS LEU LEU SER VAL GLU GLU ALA CYS LYS LEU SEQRES 8 A 531 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 A 531 ALA LYS ASP VAL ARG ASN LEU SER SER LYS ALA VAL ASN SEQRES 10 A 531 HIS ILE HIS SER VAL TRP LYS ASP LEU LEU GLU ASP THR SEQRES 11 A 531 VAL THR PRO ILE ASP THR THR ILE MSE ALA LYS ASN GLU SEQRES 12 A 531 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 531 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 531 CYS GLU LYS MSE ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 531 PRO GLN VAL VAL MSE GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 531 SER PRO GLY GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 531 LYS SER LYS LYS ASN PRO MSE GLY PHE SER TYR ASP THR SEQRES 18 A 531 ARG CYS PHE ASP SER THR VAL THR GLU ASN ASP ILE ARG SEQRES 19 A 531 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 531 GLU ALA ARG GLN ALA ILE LYS SER LEU THR GLU ARG LEU SEQRES 21 A 531 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 531 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 531 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 531 SER ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 531 MSE LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 531 SER ALA GLY THR GLN GLU ASP ALA ALA SER LEU ARG VAL SEQRES 27 A 531 PHE THR GLU ALA MSE THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 531 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 531 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 531 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 531 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 531 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE MSE TYR ALA SEQRES 33 A 531 PRO THR LEU TRP ALA ARG MSE ILE LEU MSE THR HIS PHE SEQRES 34 A 531 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 A 531 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 531 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 531 LEU SER ALA PHE SER LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 531 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 531 PRO PRO LEU ARG VAL TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 531 ARG ALA ARG LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 A 531 CYS GLY LYS TYR LEU PHE ASN TRP ALA VAL LYS MODRES 1GX6 MSE A 2 MET SELENOMETHIONINE MODRES 1GX6 MSE A 36 MET SELENOMETHIONINE MODRES 1GX6 MSE A 71 MET SELENOMETHIONINE MODRES 1GX6 MSE A 139 MET SELENOMETHIONINE MODRES 1GX6 MSE A 173 MET SELENOMETHIONINE MODRES 1GX6 MSE A 187 MET SELENOMETHIONINE MODRES 1GX6 MSE A 215 MET SELENOMETHIONINE MODRES 1GX6 MSE A 313 MET SELENOMETHIONINE MODRES 1GX6 MSE A 343 MET SELENOMETHIONINE MODRES 1GX6 MSE A 414 MET SELENOMETHIONINE MODRES 1GX6 MSE A 423 MET SELENOMETHIONINE MODRES 1GX6 MSE A 426 MET SELENOMETHIONINE HET MSE A 2 8 HET MSE A 36 8 HET MSE A 71 8 HET MSE A 139 12 HET MSE A 173 8 HET MSE A 187 8 HET MSE A 215 8 HET MSE A 313 8 HET MSE A 343 8 HET MSE A 414 12 HET MSE A 423 8 HET MSE A 426 8 HET UTP A1001 29 HET UTP A1002 13 HET UTP A1003 13 HET MN A3001 1 HET MN A3002 1 HET MN A3003 1 HET MN A3004 1 HET MN A3005 1 HETNAM MSE SELENOMETHIONINE HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 UTP 3(C9 H15 N2 O15 P3) FORMUL 5 MN 5(MN 2+) FORMUL 10 HOH *485(H2 O) HELIX 1 1 ASN A 24 LEU A 31 1 8 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ARG A 43 5 3 HELIX 4 4 SER A 44 THR A 53 1 10 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 GLY A 104 ASN A 110 1 7 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 ASP A 164 SER A 180 1 17 HELIX 10 10 THR A 181 GLY A 188 1 8 HELIX 11 11 GLY A 192 TYR A 195 5 4 HELIX 12 12 SER A 196 LYS A 211 1 16 HELIX 13 13 CYS A 223 VAL A 228 1 6 HELIX 14 14 THR A 229 GLN A 241 1 13 HELIX 15 15 ALA A 246 LEU A 260 1 15 HELIX 16 16 THR A 286 ALA A 306 1 21 HELIX 17 17 GLY A 328 TYR A 346 1 19 HELIX 18 18 ASP A 359 ILE A 363 5 5 HELIX 19 19 PRO A 388 ARG A 401 1 14 HELIX 20 20 ASN A 406 TYR A 415 1 10 HELIX 21 21 THR A 418 ILE A 424 1 7 HELIX 22 22 ILE A 424 GLN A 436 1 13 HELIX 23 23 GLU A 455 LEU A 457 5 3 HELIX 24 24 ASP A 458 GLY A 468 1 11 HELIX 25 25 LEU A 469 SER A 473 5 5 HELIX 26 26 SER A 478 GLY A 493 1 16 HELIX 27 27 PRO A 496 SER A 513 1 18 HELIX 28 28 GLY A 515 PHE A 526 1 12 HELIX 29 29 ASN A 527 VAL A 530 5 4 SHEET 1 AA 5 TYR A 4 TRP A 6 0 SHEET 2 AA 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 AA 5 GLY A 264 THR A 267 -1 O GLY A 264 N ARG A 277 SHEET 4 AA 5 THR A 136 ALA A 140 1 O THR A 136 N THR A 267 SHEET 5 AA 5 LEU A 159 PHE A 162 -1 O ILE A 160 N MSE A 139 SHEET 1 AB 2 VAL A 37 ALA A 39 0 SHEET 2 AB 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AC 3 PRO A 214 ASP A 220 0 SHEET 2 AC 3 ASP A 319 GLU A 325 -1 O LEU A 320 N TYR A 219 SHEET 3 AC 3 GLN A 309 ASN A 316 -1 O GLN A 309 N GLU A 325 SHEET 1 AD 2 ASN A 369 HIS A 374 0 SHEET 2 AD 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 AE 2 LEU A 443 ILE A 447 0 SHEET 2 AE 2 ALA A 450 ILE A 454 -1 O ALA A 450 N ILE A 447 LINK C SER A 1 N MSE A 2 1555 1555 1.33 LINK C MSE A 2 N SER A 3 1555 1555 1.33 LINK C ASN A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N VAL A 37 1555 1555 1.33 LINK C GLU A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N LYS A 72 1555 1555 1.33 LINK C ILE A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ALA A 140 1555 1555 1.33 LINK C LYS A 172 N MSE A 173 1555 1555 1.34 LINK C MSE A 173 N ALA A 174 1555 1555 1.34 LINK C VAL A 186 N MSE A 187 1555 1555 1.32 LINK C MSE A 187 N GLY A 188 1555 1555 1.32 LINK C PRO A 214 N MSE A 215 1555 1555 1.32 LINK C MSE A 215 N GLY A 216 1555 1555 1.32 LINK C THR A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N LEU A 314 1555 1555 1.33 LINK C ALA A 342 N MSE A 343 1555 1555 1.34 LINK C MSE A 343 N THR A 344 1555 1555 1.33 LINK C ILE A 413 N MSE A 414 1555 1555 1.33 LINK C MSE A 414 N TYR A 415 1555 1555 1.33 LINK C ARG A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N ILE A 424 1555 1555 1.33 LINK C LEU A 425 N MSE A 426 1555 1555 1.32 LINK C MSE A 426 N THR A 427 1555 1555 1.32 LINK OD1 ASP A 220 MN MN A3001 1555 1555 2.13 LINK OD2 ASP A 220 MN MN A3002 1555 1555 2.23 LINK O THR A 221 MN MN A3001 1555 1555 2.28 LINK OD2 ASP A 318 MN MN A3001 1555 1555 2.17 LINK OD1 ASP A 318 MN MN A3002 1555 1555 2.13 LINK OD1 ASP A 319 MN MN A3002 1555 1555 2.22 LINK O1B UTP A1001 MN MN A3001 1555 1555 2.26 LINK O3G UTP A1001 MN MN A3001 1555 1555 2.06 LINK O2A UTP A1001 MN MN A3002 1555 1555 2.05 LINK O1B UTP A1001 MN MN A3002 1555 1555 2.26 LINK O1A UTP A1001 MN MN A3003 1555 1555 2.36 LINK O2B UTP A1001 MN MN A3005 1555 1555 2.28 LINK O1B UTP A1002 MN MN A3003 1555 1555 2.51 LINK O5' UTP A1002 MN MN A3003 1555 1555 2.27 LINK O1B UTP A1002 MN MN A3004 1555 1555 2.53 LINK O1B UTP A1003 MN MN A3005 1555 1555 1.94 LINK O2A UTP A1003 MN MN A3005 1555 1555 2.56 LINK O1G UTP A1003 MN MN A3005 1555 1555 2.57 LINK O HOH A2394 MN MN A3003 1555 1555 2.76 LINK O HOH A2484 MN MN A3001 1555 1555 2.21 LINK O HOH A2485 MN MN A3002 1555 1555 2.37 LINK MN MN A3003 MN MN A3004 1555 1555 2.58 SITE 1 AC1 6 ASP A 220 THR A 221 ASP A 318 UTP A1001 SITE 2 AC1 6 HOH A2484 MN A3002 SITE 1 AC2 6 ASP A 220 ASP A 318 ASP A 319 UTP A1001 SITE 2 AC2 6 HOH A2485 MN A3001 SITE 1 AC3 4 UTP A1001 UTP A1002 HOH A2394 MN A3004 SITE 1 AC4 4 ARG A 158 UTP A1002 UTP A1003 MN A3003 SITE 1 AC5 2 UTP A1001 UTP A1003 SITE 1 AC6 23 ARG A 158 LEU A 159 ASP A 220 THR A 221 SITE 2 AC6 23 CYS A 223 PHE A 224 ASP A 225 SER A 282 SITE 3 AC6 23 THR A 287 ASP A 318 ASP A 319 UTP A1003 SITE 4 AC6 23 HOH A2333 HOH A2477 HOH A2478 HOH A2479 SITE 5 AC6 23 HOH A2480 HOH A2481 HOH A2484 MN A3001 SITE 6 AC6 23 MN A3002 MN A3003 MN A3005 SITE 1 AC7 11 GLU A 143 PHE A 145 LYS A 155 ARG A 158 SITE 2 AC7 11 SER A 367 ARG A 386 THR A 390 ARG A 394 SITE 3 AC7 11 HOH A2482 MN A3003 MN A3004 SITE 1 AC8 10 ARG A 48 LYS A 51 LYS A 155 ARG A 158 SITE 2 AC8 10 UTP A1001 HOH A2480 HOH A2483 HOH A2484 SITE 3 AC8 10 MN A3004 MN A3005 CRYST1 67.092 96.632 96.340 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010380 0.00000